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Revision 7200

mappings/VegCore-VegBIEN.csv: morphoname: Remapped to the original rather than current taxondetermination because this is the original name applied by the author

View differences:

inputs/SALVIAS/plotObservations/VegBIEN.csv
113 113
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,Brad: This is the author of the scientificName.
114 114
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
115 115
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
116
morphoname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphoname,"Not the morphospecies, which is stored in Species"
117 116
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
118 117
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank,
119 118
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
120 119
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family,Brad: OMIT
121 120
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus,
121
morphoname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/morphoname,"Not the morphospecies, which is stored in Species"
122 122
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet,Brad: OMIT
123 123
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
124 124
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
inputs/SALVIAS/plotObservations/test.xml.ref
233 233
                                            <author>$auth</author>
234 234
                                            <family>$Family</family>
235 235
                                            <genus>$Genus</genus>
236
                                            <morphoname>$morphoname</morphoname>
237 236
                                            <specific_epithet>$Species</specific_epithet>
238 237
                                            <verbatimrank>$infra_rank_1</verbatimrank>
239 238
                                        </taxonverbatim>
......
246 245
                                        <taxonverbatim>
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                                            <family>$OrigFamily</family>
248 247
                                            <genus>$OrigGenus</genus>
248
                                            <morphoname>$morphoname</morphoname>
249 249
                                            <specific_epithet>$OrigSpecies</specific_epithet>
250 250
                                        </taxonverbatim>
251 251
                                    </taxonverbatim_id>
mappings/VegCore-VegBIEN.csv
232 232
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
233 233
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
234 234
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
235
morphoname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphoname,
236 235
morphospecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphospecies,
237 236
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
238 237
taxonName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
......
253 252
originalScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/author,
254 253
originalFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family,
255 254
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus,
255
morphoname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/morphoname,
256 256
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet,
257 257
originalTaxonName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonname,
258 258
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonomicname,
mappings/for_review/VegCore-VegBIEN.csv
232 232
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/author,
233 233
family,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/family,
234 234
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/genus,
235
morphoname,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/morphoname,
236 235
morphospecies,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/morphospecies,
237 236
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/specific_epithet,
238 237
taxonName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/taxonname,
......
253 252
originalScientificNameAuthorship,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/author,
254 253
originalFamily,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family,
255 254
originalGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus,
255
morphoname,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/morphoname,
256 256
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet,
257 257
originalTaxonName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonname,
258 258
originalScientificName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonomicname,

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