Revision 7200
Added by Aaron Marcuse-Kubitza almost 12 years ago
inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
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113 | 113 |
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,Brad: This is the author of the scientificName. |
114 | 114 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
115 | 115 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
116 |
morphoname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphoname,"Not the morphospecies, which is stored in Species" |
|
117 | 116 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
118 | 117 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
119 | 118 |
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
120 | 119 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family,Brad: OMIT |
121 | 120 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus, |
121 |
morphoname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/morphoname,"Not the morphospecies, which is stored in Species" |
|
122 | 122 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet,Brad: OMIT |
123 | 123 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
124 | 124 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
inputs/SALVIAS/plotObservations/test.xml.ref | ||
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233 | 233 |
<author>$auth</author> |
234 | 234 |
<family>$Family</family> |
235 | 235 |
<genus>$Genus</genus> |
236 |
<morphoname>$morphoname</morphoname> |
|
237 | 236 |
<specific_epithet>$Species</specific_epithet> |
238 | 237 |
<verbatimrank>$infra_rank_1</verbatimrank> |
239 | 238 |
</taxonverbatim> |
... | ... | |
246 | 245 |
<taxonverbatim> |
247 | 246 |
<family>$OrigFamily</family> |
248 | 247 |
<genus>$OrigGenus</genus> |
248 |
<morphoname>$morphoname</morphoname> |
|
249 | 249 |
<specific_epithet>$OrigSpecies</specific_epithet> |
250 | 250 |
</taxonverbatim> |
251 | 251 |
</taxonverbatim_id> |
mappings/VegCore-VegBIEN.csv | ||
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232 | 232 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
233 | 233 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
234 | 234 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
235 |
morphoname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphoname, |
|
236 | 235 |
morphospecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphospecies, |
237 | 236 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
238 | 237 |
taxonName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname, |
... | ... | |
253 | 252 |
originalScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/author, |
254 | 253 |
originalFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family, |
255 | 254 |
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus, |
255 |
morphoname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/morphoname, |
|
256 | 256 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet, |
257 | 257 |
originalTaxonName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonname, |
258 | 258 |
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonomicname, |
mappings/for_review/VegCore-VegBIEN.csv | ||
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232 | 232 |
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/author, |
233 | 233 |
family,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/family, |
234 | 234 |
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/genus, |
235 |
morphoname,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/morphoname, |
|
236 | 235 |
morphospecies,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/morphospecies, |
237 | 236 |
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/specific_epithet, |
238 | 237 |
taxonName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/taxonname, |
... | ... | |
253 | 252 |
originalScientificNameAuthorship,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/author, |
254 | 253 |
originalFamily,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family, |
255 | 254 |
originalGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus, |
255 |
morphoname,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/morphoname, |
|
256 | 256 |
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet, |
257 | 257 |
originalTaxonName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonname, |
258 | 258 |
originalScientificName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonomicname, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: morphoname: Remapped to the original rather than current taxondetermination because this is the original name applied by the author