|
1
|
bien_web,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
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|
2
|
observationID,"/_if[@name=""if specimen""]/cond/_exists",
|
|
3
|
dataSourceName,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
|
|
4
|
observationType,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/observationtype",
|
|
5
|
plotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
|
|
6
|
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
7
|
observationType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/cond/_eq:[right=plot]/left",
|
|
8
|
observationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1",
|
|
9
|
observationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
|
10
|
dataSourceName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then",
|
|
11
|
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else",
|
|
12
|
plotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
|
|
13
|
plotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
|
|
14
|
plotAreaHa,/location/area_m2/_ha_to_m2/value,
|
|
15
|
elevation_m,/location/elevation_m/_alt/1,
|
|
16
|
collectionNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
17
|
observationID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
18
|
isCultivated,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_alt/2",
|
|
19
|
plotMethod,/location/locationevent/*_id/method/name,
|
|
20
|
plotCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",
|
|
21
|
plotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then",
|
|
22
|
observationDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
|
|
23
|
pctCover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
|
|
24
|
collectionNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
|
|
25
|
collectionNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
|
|
26
|
observationID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
|
27
|
dataSourceName,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name",
|
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28
|
dataSourceName,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_split:[separator="", ""]/value",
|
|
29
|
observationID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
|
|
30
|
plotCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
|
|
31
|
plotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
|
|
32
|
collectionNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
|
|
33
|
taxon,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
|
|
34
|
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
|
35
|
collectionNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
36
|
observationID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
|
37
|
isCultivated,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_alt/2",
|
|
38
|
observationID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
|
|
39
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
|
|
40
|
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
41
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
|
|
42
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
43
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
|
|
44
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
45
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
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46
|
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
|
|
47
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
48
|
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
|
49
|
taxonAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
|
|
50
|
taxonAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
|
51
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
|
52
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
|
53
|
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
54
|
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
|
|
55
|
collectionNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
|
56
|
latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
|
|
57
|
longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
|
|
58
|
country,/location/locationplace/*_id/place/country,
|
|
59
|
countyParish,/location/locationplace/*_id/place/county,
|
|
60
|
latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
|
61
|
longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
|
62
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
|
63
|
countyParish,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
|
64
|
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
|
65
|
stateProvince,/location/locationplace/*_id/place/stateprovince,
|
|
66
|
plotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
67
|
plotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
68
|
abund,,** No join mapping for *abund **
|
|
69
|
abund1,,** No join mapping for *abund1 **
|
|
70
|
abund10,,** No join mapping for *abund10 **
|
|
71
|
abund2.5,,** No join mapping for *abund2.5 **
|
|
72
|
acceptance,,** No join mapping for *acceptance **
|
|
73
|
acceptance_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
74
|
bien2_DBPlotID,,** No join mapping for *bien2_DBPlotID **
|
|
75
|
bien2_DBPlotID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
76
|
bien2_ObservationID,,** No join mapping for *bien2_ObservationID **
|
|
77
|
bien2_ObservationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
78
|
bien2_OccurID,,** No join mapping for *bien2_OccurID **
|
|
79
|
bien2_OccurID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
80
|
bien2_TraitObservationID,,** No join mapping for *bien2_TraitObservationID **
|
|
81
|
bien2_TraitObservationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
82
|
bien2_taxonomyID,,** No join mapping for *bien2_taxonomyID **
|
|
83
|
bien2_taxonomyID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
84
|
collector_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
85
|
countryError,,** No join mapping for *countryError **
|
|
86
|
country_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
87
|
dataSourceID,,** No join mapping for *dataSourceID **
|
|
88
|
dataSourceID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
89
|
dataSourceNamePrimary,,** No join mapping for *dataSourceNamePrimary **
|
|
90
|
dataSourceNamePrimary_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
91
|
dataSourceName_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
92
|
family_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
93
|
genus_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
94
|
higherPlantGroup,,** No join mapping for higherPlantGroup **
|
|
95
|
higherPlantGroup_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
96
|
identifiedBy_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
97
|
isCultivatedReason,,** No join mapping for cultivatedBasis **
|
|
98
|
isCultivatedReason_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
99
|
isCultivated_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
100
|
isGeovalid,,** No join mapping for *isGeovalid **
|
|
101
|
isGeovalid_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
102
|
isNewWorld,,** No join mapping for isNewWorld **
|
|
103
|
isNewWorld_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
104
|
isValidLatLong,,** No join mapping for *isValidLatLong **
|
|
105
|
isValidLatLong_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
106
|
localityDescription,,** No join mapping for *localityDescription **
|
|
107
|
observationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
108
|
observationType_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
109
|
plotAreaHa_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
110
|
plotCode_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
111
|
plotID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
112
|
plotMethod_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
113
|
plotMinDbh,,** No join mapping for *plotMinDbh **
|
|
114
|
plotMinDbh_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
115
|
rank,,** No join mapping for *rank **
|
|
116
|
rank_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
117
|
species_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
118
|
stateProvinceError,,** No join mapping for *stateProvinceError **
|
|
119
|
stateProvince_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
120
|
taxonAuthor_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
121
|
taxonAuthorityVerbatim,,** No join mapping for *taxonAuthorityVerbatim **
|
|
122
|
taxonAuthorityVerbatim_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
123
|
taxonMorphospecies,,** No join mapping for scientificNameWithMorphospecies **
|
|
124
|
taxonMorphospecies_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
125
|
taxon_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
126
|
traitMethod,,** No join mapping for *traitMethod **
|
|
127
|
traitMethod_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
128
|
traitName,,** No join mapping for traitName **
|
|
129
|
traitName_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
130
|
traitUnit,,** No join mapping for *traitUnit **
|
|
131
|
traitUnit_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
|
132
|
traitValue,,** No join mapping for *traitValue **
|
