Revision 7217
Added by Aaron Marcuse-Kubitza almost 12 years ago
inputs/Madidi/Plot/map.csv | ||
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Madidi,VegCore,Filter,Comments |
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Inventory number,*Inventory number,,Not globally unique |
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Expedition number,projectID,,Consistent (globally unique) between PPM and PT data |
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Expedition name,projectName,,Consistent (globally unique) between PPM and PT data |
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Number of inventory (expedition),*Number of inventory (expedition),,The number of the event within the project |
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Inventory name,locationName,, |
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Inventory code,locationID,, |
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First evaluation,eventDate,, |
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Installed and evaluated by,*Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
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Collaborators,*Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
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Related Epilocs,*Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots." |
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Area,plotArea_ha,,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)" |
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Number of stems,*Number of stems,,Do we want to store this data? |
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Number of trees,*Number of trees,,Do we want to store this data? |
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Coordinates,*Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS) |
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Latitude,decimalLatitude,, |
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Longitude,decimalLongitude,, |
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Latitude (DMS),latitude_DMS,, |
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Longitude (DMS),longitude_DMS,, |
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Altitude,elevationInMeters,,"Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
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|
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[1] Using the following query: |
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----- |
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SELECT ""Altitude""::real, ""Locality"" |
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FROM ""Madidi"".""Plot"" |
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WHERE ""Altitude"" IS NOT NULL AND ""Altitude"" != ' 1430' |
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GROUP BY ""Altitude""::real , ""Locality"" |
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ORDER BY ""Altitude""::real DESC |
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----- |
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[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
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Minimum altitude,verbatimElevation_m,,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
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|
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[1] Using the following query: |
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----- |
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SELECT ""Minimum altitude"", ""Locality"" |
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FROM ""Madidi"".""Plot"" |
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WHERE ""Minimum altitude"" IS NOT NULL |
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GROUP BY ""Minimum altitude"" , ""Locality"" |
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----- |
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[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
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Locality,locality,, |
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Locality description,communityName,,Often begins with the text in Vegetation type |
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Direction,slopeAspect,/_alt/1,Part files provide either this field or Orientación |
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Vegetation type,communityID,, |
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Topographical situation,landform,, |
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Slope,slopeGradient,, |
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Soil sample,*Soil sample,,Always empty |
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pH acuoso (ISRIC 4–– 1 - 14),ph,, |
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Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,, |
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Nitrógeno total (ISRIC 6–%–0.0014),nitrogen_percent,,Assuming units are % based on the range of values |
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"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon_percent,,Assuming units are % based on the range of values |
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"Materia Orgánica (WSP S-9,10–%–0.1)",organic_percent,,Assuming units are % based on the range of values |
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Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus_percent,,Assuming units are % based on the range of values |
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"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium_percent,,Assuming units are % based on the range of values |
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"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium_percent,,Assuming units are % based on the range of values |
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"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium_percent,,Assuming units are % based on the range of values |
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"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium_percent,,Assuming units are % based on the range of values |
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Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity_percent,,Assuming units are % based on the range of values |
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CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity_cmol_kg,, |
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Arena (DIN 18 123–%–2.5),sand_percent,,Assuming units are % based on the range of values |
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Limo (DIN 18 123–%–1),silt_percent,,Assuming units are % based on the range of values |
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Arcilla (DIN 18 123–%–1),clay_percent,,Assuming units are % based on the range of values |
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Textural class,texture,, |
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Observaciones,plotNotes,, |
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Orientación/exposicion,slopeAspect,/_alt/2,Part files provide either this field or Direction |
inputs/Madidi/Plot/test.xml.ref | ||
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Put template: |
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<VegBIEN> |
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<_setDefault id="-1"> |
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<source_id><source><shortname>Madidi</shortname></source></source_id> |
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<path> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<location> |
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<authorlocationcode>$Inventory name</authorlocationcode> |
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<sourceaccessioncode>$Inventory code</sourceaccessioncode> |
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<area_m2><_ha_to_m2><value>$Area</value></_ha_to_m2></area_m2> |
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<elevation_m> |
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<_alt> |
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<1>$Altitude</1> |
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<2> |
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<_avg> |
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<max><_rangeEnd><value>$Minimum altitude</value></_rangeEnd></max> |
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<min><_rangeStart><value>$Minimum altitude</value></_rangeStart></min> |
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</_avg> |
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</2> |
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</_alt> |
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</elevation_m> |
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<elevationrange_m> |
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<_range> |
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<from><_rangeStart><value>$Minimum altitude</value></_rangeStart></from> |
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<to><_rangeEnd><value>$Minimum altitude</value></_rangeEnd></to> |
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</_range> |
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</elevationrange_m> |
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<iscultivated><_locationnarrative_is_cultivated><locationnarrative>$Locality</locationnarrative></_locationnarrative_is_cultivated></iscultivated> |
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<landform>$Topographical situation</landform> |
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<locationevent> |
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<project_id> |
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<project> |
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<projectname>$Expedition name</projectname> |
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<sourceaccessioncode>$Expedition number</sourceaccessioncode> |
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</project> |
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</project_id> |
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<commclass> |
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<commdetermination> |
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<commconcept_id> |
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<commconcept> |
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<commname_id><commname><commname>$Vegetation type</commname></commname></commname_id> |
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<commdescription>$Locality description</commdescription> |
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</commconcept> |
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</commconcept_id> |
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</commdetermination> |
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</commclass> |
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<obsenddate><_dateRangeEnd><value>$First evaluation</value></_dateRangeEnd></obsenddate> |
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<obsstartdate><_dateRangeStart><value>$First evaluation</value></_dateRangeStart></obsstartdate> |
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<soilsample> |
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<acidity_fraction><_percent_to_fraction><value>$Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05)</value></_percent_to_fraction></acidity_fraction> |
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<calcium_fraction><_percent_to_fraction><value>$Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)</value></_percent_to_fraction></calcium_fraction> |
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<carbon_fraction><_percent_to_fraction><value>$Carbón Orgánico (WSP S-9,10–%–0.06)</value></_percent_to_fraction></carbon_fraction> |
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<cationexchangecapacity_cmol_kg>$CIC (ISRIC 11–cmolc/Kg–0.05)</cationexchangecapacity_cmol_kg> |
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<clay_fraction><_percent_to_fraction><value>$Arcilla (DIN 18 123–%–1)</value></_percent_to_fraction></clay_fraction> |
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<conductivity>$Conductividad electrica (ASPT 6–µS/cm– 1 - 10000)</conductivity> |
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<magnesium_fraction><_percent_to_fraction><value>$Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)</value></_percent_to_fraction></magnesium_fraction> |
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<nitrogen_fraction><_percent_to_fraction><value>$Nitrógeno total (ISRIC 6–%–0.0014)</value></_percent_to_fraction></nitrogen_fraction> |
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<organic_fraction><_percent_to_fraction><value>$Materia Orgánica (WSP S-9,10–%–0.1)</value></_percent_to_fraction></organic_fraction> |
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<ph>$pH acuoso (ISRIC 4–– 1 - 14)</ph> |
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<phosphorus_fraction><_percent_to_fraction><value>$Fósforo disponible (ISRIC 14-2–mg/Kg–1.5)</value></_percent_to_fraction></phosphorus_fraction> |
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<potassium_fraction><_percent_to_fraction><value>$Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)</value></_percent_to_fraction></potassium_fraction> |
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<sand_fraction><_percent_to_fraction><value>$Arena (DIN 18 123–%–2.5)</value></_percent_to_fraction></sand_fraction> |
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<silt_fraction><_percent_to_fraction><value>$Limo (DIN 18 123–%–1)</value></_percent_to_fraction></silt_fraction> |
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<sodium_fraction><_percent_to_fraction><value>$Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)</value></_percent_to_fraction></sodium_fraction> |
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<texture>$Textural class</texture> |
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</soilsample> |
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</locationevent> |
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<locationnarrative>$Locality</locationnarrative> |
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<locationplace> |
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<place_id> |
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<place> |
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<coordinates_id> |
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<coordinates> |
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<latitude_deg> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Latitude</value> |
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</_nullIf> |
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</latitude_deg> |
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<longitude_deg> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Longitude</value> |
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</_nullIf> |
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</longitude_deg> |
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<verbatimlatitude>$Latitude (DMS)</verbatimlatitude> |
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<verbatimlongitude>$Longitude (DMS)</verbatimlongitude> |
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</coordinates> |
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</coordinates_id> |
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<matched_place_id> |
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<place> |
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<source_id><source><shortname>geoscrub</shortname></source></source_id> |
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<coordinates_id> |
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<coordinates> |
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<source_id><source><shortname>geoscrub</shortname></source></source_id> |
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<latitude_deg> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Latitude</value> |
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</_nullIf> |
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</latitude_deg> |
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<longitude_deg> |
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<_nullIf> |
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<null>0</null> |
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<type>float</type> |
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<value>$Longitude</value> |
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</_nullIf> |
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</longitude_deg> |
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</coordinates> |
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</coordinates_id> |
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</place> |
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</matched_place_id> |
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</place> |
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</place_id> |
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</locationplace> |
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<notespublic>$Observaciones</notespublic> |
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<slopeaspect_deg> |
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<_compass> |
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<value> |
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<_alt> |
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<1>$Direction</1> |
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<2>$Orientación/exposicion</2> |
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</_alt> |
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</value> |
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</_compass> |
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</slopeaspect_deg> |
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<slopegradient_fraction>$Slope</slopegradient_fraction> |
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<verbatimelevation>$Minimum altitude</verbatimelevation> |
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</location> |
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</path> |
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</_simplifyPath> |
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</path> |
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</_setDefault> |
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</VegBIEN> |
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Inserted 28 new rows into database |
inputs/Madidi/Plot/VegBIEN.csv | ||
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Madidi,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
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Inventory name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
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Inventory code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
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Inventory code,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else", |
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Inventory name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
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Inventory code,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
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Area,/location/area_m2/_ha_to_m2/value,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)" |
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Altitude,/location/elevation_m/_alt/1,"Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
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|
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[1] Using the following query: |
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----- |
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SELECT ""Altitude""::real, ""Locality"" |
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FROM ""Madidi"".""Plot"" |
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WHERE ""Altitude"" IS NOT NULL AND ""Altitude"" != ' 1430' |
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GROUP BY ""Altitude""::real , ""Locality"" |
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ORDER BY ""Altitude""::real DESC |
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----- |
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[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
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Minimum altitude,/location/elevation_m/_alt/2/_avg/max/_rangeEnd/value,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
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|
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[1] Using the following query: |
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----- |
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SELECT ""Minimum altitude"", ""Locality"" |
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FROM ""Madidi"".""Plot"" |
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WHERE ""Minimum altitude"" IS NOT NULL |
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GROUP BY ""Minimum altitude"" , ""Locality"" |
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----- |
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[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
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Minimum altitude,/location/elevation_m/_alt/2/_avg/min/_rangeStart/value,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
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|
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[1] Using the following query: |
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32 |
----- |
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SELECT ""Minimum altitude"", ""Locality"" |
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FROM ""Madidi"".""Plot"" |
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WHERE ""Minimum altitude"" IS NOT NULL |
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GROUP BY ""Minimum altitude"" , ""Locality"" |
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37 |
----- |
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38 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
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Minimum altitude,/location/elevationrange_m/_range/from/_rangeStart/value,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
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40 |
|
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41 |
[1] Using the following query: |
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42 |
----- |
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43 |
SELECT ""Minimum altitude"", ""Locality"" |
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FROM ""Madidi"".""Plot"" |
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45 |
WHERE ""Minimum altitude"" IS NOT NULL |
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GROUP BY ""Minimum altitude"" , ""Locality"" |
|
47 |
----- |
|
48 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
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Minimum altitude,/location/elevationrange_m/_range/to/_rangeEnd/value,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
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50 |
|
|
51 |
[1] Using the following query: |
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52 |
----- |
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53 |
SELECT ""Minimum altitude"", ""Locality"" |
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54 |
FROM ""Madidi"".""Plot"" |
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55 |
WHERE ""Minimum altitude"" IS NOT NULL |
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56 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
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57 |
----- |
|
58 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
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59 |
Locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1, |
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Topographical situation,/location/landform, |
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Expedition name,/location/locationevent/*_id/project/projectname,Consistent (globally unique) between PPM and PT data |
|
62 |
Expedition number,/location/locationevent/*_id/project/sourceaccessioncode,Consistent (globally unique) between PPM and PT data |
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First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
|
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Inventory name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
|
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Inventory code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
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66 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
67 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
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Vegetation type,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
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Locality description,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,Often begins with the text in Vegetation type |
|
70 |
First evaluation,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
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71 |
First evaluation,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
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72 |
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilsample/acidity_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
73 |
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",/location/locationevent/soilsample/calcium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
74 |
"Carbón Orgánico (WSP S-9,10–%–0.06)",/location/locationevent/soilsample/carbon_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
75 |
CIC (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilsample/cationexchangecapacity_cmol_kg, |
|
76 |
Arcilla (DIN 18 123–%–1),/location/locationevent/soilsample/clay_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
77 |
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),/location/locationevent/soilsample/conductivity, |
|
78 |
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilsample/magnesium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
79 |
Nitrógeno total (ISRIC 6–%–0.0014),/location/locationevent/soilsample/nitrogen_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
80 |
"Materia Orgánica (WSP S-9,10–%–0.1)",/location/locationevent/soilsample/organic_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
81 |
pH acuoso (ISRIC 4–– 1 - 14),/location/locationevent/soilsample/ph, |
|
82 |
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),/location/locationevent/soilsample/phosphorus_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
83 |
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",/location/locationevent/soilsample/potassium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
84 |
Arena (DIN 18 123–%–2.5),/location/locationevent/soilsample/sand_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
85 |
Limo (DIN 18 123–%–1),/location/locationevent/soilsample/silt_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
86 |
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilsample/sodium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
87 |
Textural class,/location/locationevent/soilsample/texture, |
|
88 |
Inventory code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
89 |
Inventory name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
90 |
Locality,/location/locationnarrative/_merge/1, |
|
91 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
92 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
93 |
Latitude (DMS),/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude, |
|
94 |
Longitude (DMS),/location/locationplace/*_id/place/*_id/coordinates/verbatimlongitude, |
|
95 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
|
96 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
|
97 |
Observaciones,/location/notespublic, |
|
98 |
Direction,/location/slopeaspect_deg/_alt/1/_compass/value/_alt/1,Part files provide either this field or Orientación |
|
99 |
Orientación/exposicion,/location/slopeaspect_deg/_alt/1/_compass/value/_alt/2,Part files provide either this field or Direction |
|
100 |
Slope,/location/slopegradient_fraction/_alt/1, |
|
101 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
102 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
103 |
Minimum altitude,/location/verbatimelevation,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
104 |
|
|
105 |
[1] Using the following query: |
|
106 |
----- |
|
107 |
SELECT ""Minimum altitude"", ""Locality"" |
|
108 |
FROM ""Madidi"".""Plot"" |
|
109 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
110 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
111 |
----- |
|
112 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
113 |
Collaborators,,"** No join mapping for *Collaborators ** Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
|
114 |
Coordinates,,** No join mapping for *Coordinates ** Concatenation of Latitude (DMS) and Longitude (DMS) |
|
115 |
Installed and evaluated by,,"** No join mapping for *Installed and evaluated by ** Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
|
116 |
Inventory number,,** No join mapping for *Inventory number ** Not globally unique |
|
117 |
Number of inventory (expedition),,** No join mapping for *Number of inventory (expedition) ** The number of the event within the project |
|
118 |
Number of stems,,** No join mapping for *Number of stems ** Do we want to store this data? |
|
119 |
Number of trees,,** No join mapping for *Number of trees ** Do we want to store this data? |
|
120 |
Related Epilocs,,"** No join mapping for *Related Epilocs ** It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots." |
|
121 |
Soil sample,,** No join mapping for *Soil sample ** Always empty |
inputs/Madidi/Plot/new_terms.csv | ||
---|---|---|
1 |
Expedition number,projectID,,Consistent (globally unique) between PPM and PT data |
|
2 |
Expedition name,projectName,,Consistent (globally unique) between PPM and PT data |
|
3 |
Inventory name,locationName,, |
|
4 |
Inventory code,locationID,, |
|
5 |
First evaluation,eventDate,, |
|
6 |
Area,plotArea_ha,,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)" |
|
7 |
Altitude,elevationInMeters,,"Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
8 |
|
|
9 |
[1] Using the following query: |
|
10 |
----- |
|
11 |
SELECT ""Altitude""::real, ""Locality"" |
|
12 |
FROM ""Madidi"".""Plot"" |
|
13 |
WHERE ""Altitude"" IS NOT NULL AND ""Altitude"" != ' 1430' |
|
14 |
GROUP BY ""Altitude""::real , ""Locality"" |
|
15 |
ORDER BY ""Altitude""::real DESC |
|
16 |
----- |
|
17 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
18 |
Minimum altitude,verbatimElevation_m,,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
19 |
|
|
20 |
[1] Using the following query: |
|
21 |
----- |
|
22 |
SELECT ""Minimum altitude"", ""Locality"" |
|
23 |
FROM ""Madidi"".""Plot"" |
|
24 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
25 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
26 |
----- |
|
27 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
28 |
Locality description,communityName,,Often begins with the text in Vegetation type |
|
29 |
Direction,slopeAspect,/_alt/1,Part files provide either this field or Orientación |
|
30 |
Vegetation type,communityID,, |
|
31 |
Topographical situation,landform,, |
|
32 |
Slope,slopeGradient,, |
|
33 |
pH acuoso (ISRIC 4–– 1 - 14),ph,, |
|
34 |
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,, |
|
35 |
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen_percent,,Assuming units are % based on the range of values |
|
36 |
"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon_percent,,Assuming units are % based on the range of values |
|
37 |
"Materia Orgánica (WSP S-9,10–%–0.1)",organic_percent,,Assuming units are % based on the range of values |
|
38 |
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus_percent,,Assuming units are % based on the range of values |
|
39 |
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium_percent,,Assuming units are % based on the range of values |
|
40 |
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium_percent,,Assuming units are % based on the range of values |
|
41 |
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium_percent,,Assuming units are % based on the range of values |
|
42 |
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium_percent,,Assuming units are % based on the range of values |
|
43 |
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity_percent,,Assuming units are % based on the range of values |
|
44 |
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity_cmol_kg,, |
|
45 |
Arena (DIN 18 123–%–2.5),sand_percent,,Assuming units are % based on the range of values |
|
46 |
Limo (DIN 18 123–%–1),silt_percent,,Assuming units are % based on the range of values |
|
47 |
Arcilla (DIN 18 123–%–1),clay_percent,,Assuming units are % based on the range of values |
|
48 |
Textural class,texture,, |
|
49 |
Observaciones,plotNotes,, |
|
50 |
Orientación/exposicion,slopeAspect,/_alt/2,Part files provide either this field or Direction |
inputs/Madidi/Plot/+header.csv | ||
---|---|---|
1 |
!Inventory number,Expedition number,Expedition name,Number of inventory (expedition),Inventory name,Inventory code,First evaluation,Installed and evaluated by,Collaborators,Related Epilocs,Area,Number of stems,Number of trees,Coordinates,Latitude,Longitude,Latitude (DMS),Longitude (DMS),Altitude,Minimum altitude,Locality,Locality description,Direction,Vegetation type,Topographical situation,Slope,Soil sample,pH acuoso (ISRIC 4–– 1 - 14),Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),Nitrógeno total (ISRIC 6–%–0.0014),"Carbón Orgánico (WSP S-9,10–%–0.06)","Materia Orgánica (WSP S-9,10–%–0.1)",Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)","Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)","Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)","Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),CIC (ISRIC 11–cmolc/Kg–0.05),Arena (DIN 18 123–%–2.5),Limo (DIN 18 123–%–1),Arcilla (DIN 18 123–%–1),Textural class,Observaciones,Orientación/exposicion |
inputs/Madidi/Plot/unmapped_terms.csv | ||
---|---|---|
1 |
*Inventory number |
|
2 |
*Number of inventory (expedition) |
|
3 |
*Installed and evaluated by |
|
4 |
*Collaborators |
|
5 |
*Related Epilocs |
|
6 |
*Number of stems |
|
7 |
*Number of trees |
|
8 |
*Coordinates |
|
9 |
*Soil sample |
inputs/Madidi/Organism/new_terms.csv | ||
---|---|---|
1 |
Expedition,projectName,, |
|
2 |
Inventory name,locationName,, |
|
3 |
Inventory code,locationID,, |
|
4 |
Tag number,tag,, |
|
5 |
Tree number,individualCode,, |
|
6 |
Number of subplot,subplot,, |
|
7 |
Index collector,recordedBy,, |
|
8 |
Specimen,catalogNumber,, |
|
9 |
Field family,originalFamily,, |
|
10 |
Field name,originalGenus,,Often = Genera |
|
11 |
Family (revised),family,, |
|
12 |
Specie+autor,scientificName,, |
|
13 |
Genera,genus,, |
|
14 |
Species and morphotypes,taxonName,,"Contains less than ""Specie+autor""" |
|
15 |
Autor (revised),scientificNameAuthorship,, |
|
16 |
Determined by,identifiedBy,, |
|
17 |
Qualifier,identificationQualifier,, |
|
18 |
Diameter,diameterBreastHeight_cm,,Assuming units based on the range and precision of values |
|
19 |
Trunk,authorStemCode,, |
|
20 |
Total height,height_m,,Assuming units based on the range and precision of values |
|
21 |
Liana presence,lianaInfestation,, |
|
22 |
Observations,fieldNotes,, |
inputs/Madidi/Organism/unmapped_terms.csv | ||
---|---|---|
1 |
*Number of inventory (general) |
|
2 |
*Number of inventory (expedition) |
|
3 |
"*Type Inventory (C, PP, TP)" |
|
4 |
*Similar specimen |
|
5 |
*Plot specimen |
|
6 |
*Expedition specimen |
|
7 |
*Project specimen |
|
8 |
*Common name |
|
9 |
*Circumference |
|
10 |
*Bole height |
|
11 |
*Phenology |
|
12 |
*Crown position |
|
13 |
*Crown shape |
|
14 |
*Basal area |
|
15 |
*Plot X |
|
16 |
*Plot Y |
inputs/Madidi/Organism/map.csv | ||
---|---|---|
1 |
Madidi,VegCore,Filter,Comments |
|
2 |
Expedition,projectName,, |
|
3 |
Inventory name,locationName,, |
|
4 |
Number of inventory (general),*Number of inventory (general),, |
|
5 |
Number of inventory (expedition),*Number of inventory (expedition),, |
|
6 |
"Type Inventory (C, PP, TP)","*Type Inventory (C, PP, TP)",, |
|
7 |
Inventory code,locationID,, |
|
8 |
Tag number,tag,, |
|
9 |
Tree number,individualCode,, |
|
10 |
Number of subplot,subplot,, |
|
11 |
Index collector,recordedBy,, |
|
12 |
Specimen,catalogNumber,, |
|
13 |
Similar specimen,*Similar specimen,, |
|
14 |
Plot specimen,*Plot specimen,, |
|
15 |
Expedition specimen,*Expedition specimen,, |
|
16 |
Project specimen,*Project specimen,, |
|
17 |
Field family,originalFamily,, |
|
18 |
Field name,originalGenus,,Often = Genera |
|
19 |
Family (revised),family,, |
|
20 |
Specie+autor,scientificName,, |
|
21 |
Genera,genus,, |
|
22 |
Specific epithet,specificEpithet,, |
|
23 |
Species and morphotypes,taxonName,,"Contains less than ""Specie+autor""" |
|
24 |
Autor (revised),scientificNameAuthorship,, |
|
25 |
Determined by,identifiedBy,, |
|
26 |
Qualifier,identificationQualifier,, |
|
27 |
Common name,*Common name,, |
|
28 |
Circumference,*Circumference,, |
|
29 |
Diameter,diameterBreastHeight_cm,,Assuming units based on the range and precision of values |
|
30 |
Trunk,authorStemCode,, |
|
31 |
Total height,height_m,,Assuming units based on the range and precision of values |
|
32 |
Bole height,*Bole height,,trunk height |
|
33 |
Habit,growthForm,"/_map:[./{""Árbol"",Arbol,""Árbolito"",Arbolito,Palmera}=tree,Hemiepifito=hemiepiphyte,Liana=liana,Arbusto=shrub,./{""Helecho arbóreo"",""Helecho arboreo""}=forb]/value", |
|
34 |
Phenology,*Phenology,, |
|
35 |
Crown position,*Crown position,, |
|
36 |
Crown shape,*Crown shape,, |
|
37 |
Liana presence,lianaInfestation,, |
|
38 |
Basal area,*Basal area,,"Would be basalDiameter, but need formula to translate" |
|
39 |
Subplot X,organismX_m,,"Assuming units based on the size of values relative to the plot area, which has units of ha" |
|
40 |
Subplot Y,organismY_m,,"Assuming units based on the size of values relative to the plot area, which has units of ha" |
|
41 |
Plot X,*Plot X,, |
|
42 |
Plot Y,*Plot Y,, |
|
43 |
Observations,fieldNotes,, |
inputs/Madidi/Organism/test.xml.ref | ||
---|---|---|
1 |
Put template: |
|
2 |
<VegBIEN> |
|
3 |
<_setDefault id="-1"> |
|
4 |
<source_id><source><shortname>Madidi</shortname></source></source_id> |
|
5 |
<path> |
|
6 |
<_simplifyPath> |
|
7 |
<next>parent_id</next> |
|
8 |
<path> |
|
9 |
<location> |
|
10 |
<parent_id> |
|
11 |
<location> |
|
12 |
<authorlocationcode>$Inventory name</authorlocationcode> |
|
13 |
<sourceaccessioncode>$Inventory code</sourceaccessioncode> |
|
14 |
</location> |
|
15 |
</parent_id> |
|
16 |
<authorlocationcode>$Number of subplot</authorlocationcode> |
|
17 |
<locationevent> |
|
18 |
<project_id><project><projectname>$Expedition</projectname></project></project_id> |
|
19 |
<taxonoccurrence> |
|
20 |
<aggregateoccurrence> |
|
21 |
<notes>$Observations</notes> |
|
22 |
<plantobservation> |
|
23 |
<authorplantcode>$Tree number</authorplantcode> |
|
24 |
<specimenreplicate><catalognumber_dwc>$Specimen</catalognumber_dwc></specimenreplicate> |
|
25 |
<stemobservation> |
|
26 |
<authorstemcode>$Trunk</authorstemcode> |
|
27 |
<definedvalue fkey="tablerecord_id"> |
|
28 |
<userdefined_id> |
|
29 |
<userdefined> |
|
30 |
<tablename>stemobservation</tablename> |
|
31 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
32 |
</userdefined> |
|
33 |
</userdefined_id> |
|
34 |
<definedvalue>$Liana presence</definedvalue> |
|
35 |
</definedvalue> |
|
36 |
<diameterbreastheight_m><_cm_to_m><value>$Diameter</value></_cm_to_m></diameterbreastheight_m> |
|
37 |
<height_m>$Total height</height_m> |
|
38 |
<tag>$Tag number</tag> |
|
39 |
<xposition_m>$Subplot X</xposition_m> |
|
40 |
<yposition_m>$Subplot Y</yposition_m> |
|
41 |
</stemobservation> |
|
42 |
</plantobservation> |
|
43 |
</aggregateoccurrence> |
|
44 |
<authortaxoncode>$Tree number</authortaxoncode> |
|
45 |
<collector_id><party><fullname>$Index collector</fullname></party></collector_id> |
|
46 |
<growthform> |
|
47 |
<_map> |
|
48 |
<Árbol>tree</Árbol> |
|
49 |
<Arbol>tree</Arbol> |
|
50 |
<Árbolito>tree</Árbolito> |
|
51 |
<Arbolito>tree</Arbolito> |
|
52 |
<Palmera>tree</Palmera> |
|
53 |
<Hemiepifito>hemiepiphyte</Hemiepifito> |
|
54 |
<Liana>liana</Liana> |
|
55 |
<Arbusto>shrub</Arbusto> |
|
56 |
<Helecho arbóreo>forb</Helecho arbóreo> |
|
57 |
<Helecho arboreo>forb</Helecho arboreo> |
|
58 |
<value>$Habit</value> |
|
59 |
</_map> |
|
60 |
</growthform> |
|
61 |
<taxondetermination> |
|
62 |
<party_id><party><fullname>$Determined by</fullname></party></party_id> |
|
63 |
<taxonverbatim_id> |
|
64 |
<taxonverbatim> |
|
65 |
<taxonlabel_id> |
|
66 |
<taxonlabel> |
|
67 |
<parent_id> |
|
68 |
<taxonlabel> |
|
69 |
<parent_id> |
|
70 |
<taxonlabel> |
|
71 |
<rank>cultivar</rank> |
|
72 |
<parent_id> |
|
73 |
<taxonlabel> |
|
74 |
<rank>forma</rank> |
|
75 |
<parent_id> |
|
76 |
<taxonlabel> |
|
77 |
<rank>variety</rank> |
|
78 |
<parent_id> |
|
79 |
<taxonlabel> |
|
80 |
<rank>subspecies</rank> |
|
81 |
<parent_id> |
|
82 |
<taxonlabel> |
|
83 |
<rank>species</rank> |
|
84 |
<taxonepithet>$Specific epithet</taxonepithet> |
|
85 |
<parent_id> |
|
86 |
<taxonlabel> |
|
87 |
<rank>genus</rank> |
|
88 |
<taxonepithet>$Genera</taxonepithet> |
|
89 |
<parent_id> |
|
90 |
<taxonlabel> |
|
91 |
<rank>family</rank> |
|
92 |
<taxonepithet>$Family (revised)</taxonepithet> |
|
93 |
</taxonlabel> |
|
94 |
</parent_id> |
|
95 |
</taxonlabel> |
|
96 |
</parent_id> |
|
97 |
</taxonlabel> |
|
98 |
</parent_id> |
|
99 |
</taxonlabel> |
|
100 |
</parent_id> |
|
101 |
</taxonlabel> |
|
102 |
</parent_id> |
|
103 |
</taxonlabel> |
|
104 |
</parent_id> |
|
105 |
</taxonlabel> |
|
106 |
</parent_id> |
|
107 |
</taxonlabel> |
|
108 |
</parent_id> |
|
109 |
<taxonomicname> |
|
110 |
<_merge_prefix> |
|
111 |
<prefix><_taxon_family_require_std><family>$Family (revised)</family></_taxon_family_require_std></prefix> |
|
112 |
<value> |
|
113 |
<_alt> |
|
114 |
<1>$Specie+autor</1> |
|
115 |
<2> |
|
116 |
<_join_words> |
|
117 |
<1> |
|
118 |
<_alt> |
|
119 |
<1>$Species and morphotypes</1> |
|
120 |
<2> |
|
121 |
<_join_words> |
|
122 |
<2>$Genera</2> |
|
123 |
<3>$Specific epithet</3> |
|
124 |
</_join_words> |
|
125 |
</2> |
|
126 |
</_alt> |
|
127 |
</1> |
|
128 |
<2>$Autor (revised)</2> |
|
129 |
</_join_words> |
|
130 |
</2> |
|
131 |
</_alt> |
|
132 |
</value> |
|
133 |
</_merge_prefix> |
|
134 |
</taxonomicname> |
|
135 |
</taxonlabel> |
|
136 |
</taxonlabel_id> |
|
137 |
<author>$Autor (revised)</author> |
|
138 |
<family>$Family (revised)</family> |
|
139 |
<genus>$Genera</genus> |
|
140 |
<specific_epithet>$Specific epithet</specific_epithet> |
|
141 |
<taxonname>$Species and morphotypes</taxonname> |
|
142 |
<taxonomicname>$Specie+autor</taxonomicname> |
|
143 |
</taxonverbatim> |
|
144 |
</taxonverbatim_id> |
|
145 |
<taxonfit>$Qualifier</taxonfit> |
|
146 |
</taxondetermination> |
|
147 |
<taxondetermination> |
|
148 |
<isoriginal>true</isoriginal> |
|
149 |
<taxonverbatim_id> |
|
150 |
<taxonverbatim> |
|
151 |
<family>$Field family</family> |
|
152 |
<genus>$Field name</genus> |
|
153 |
</taxonverbatim> |
|
154 |
</taxonverbatim_id> |
|
155 |
</taxondetermination> |
|
156 |
</taxonoccurrence> |
|
157 |
</locationevent> |
|
158 |
<sourceaccessioncode> |
|
159 |
<_join> |
|
160 |
<1>$Inventory code</1> |
|
161 |
<2>$Number of subplot</2> |
|
162 |
</_join> |
|
163 |
</sourceaccessioncode> |
|
164 |
</location> |
|
165 |
</path> |
|
166 |
</_simplifyPath> |
|
167 |
</path> |
|
168 |
</_setDefault> |
|
169 |
</VegBIEN> |
|
170 |
Inserted 33 new rows into database |
inputs/Madidi/Organism/VegBIEN.csv | ||
---|---|---|
1 |
Madidi,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
|
2 |
Specimen,"/_if[@name=""if specimen""]/cond/_exists", |
|
3 |
Number of subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
|
4 |
Inventory name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
|
5 |
Inventory code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
|
6 |
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists", |
|
7 |
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
|
8 |
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
|
9 |
Inventory code,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else", |
|
10 |
Inventory name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
|
11 |
Inventory code,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
|
12 |
Number of subplot,/location/authorlocationcode, |
|
13 |
Expedition,/location/locationevent/*_id/project/projectname, |
|
14 |
Number of subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists", |
|
15 |
Number of subplot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/cond/_first/2", |
|
16 |
Inventory name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
|
17 |
Number of subplot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
|
18 |
Inventory code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
|
19 |
Observations,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
|
20 |
Tree number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1, |
|
21 |
Specimen,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
22 |
Specimen,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
|
23 |
Trunk,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode, |
|
24 |
Liana presence,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
|
25 |
Diameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,Assuming units based on the range and precision of values |
|
26 |
Total height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,Assuming units based on the range and precision of values |
|
27 |
Tag number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
|
28 |
Subplot X,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,"Assuming units based on the size of values relative to the plot area, which has units of ha" |
|
29 |
Subplot Y,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,"Assuming units based on the size of values relative to the plot area, which has units of ha" |
|
30 |
Inventory code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
31 |
Inventory name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
32 |
Tree number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/1", |
|
33 |
Tag number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2", |
|
34 |
Specie+autor,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
|
35 |
Species and morphotypes,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3","Contains less than ""Specie+autor""" |
|
36 |
Index collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
|
37 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{""Árbol"",Arbol,""Árbolito"",Arbolito,Palmera}=tree,Hemiepifito=hemiepiphyte,Liana=liana,Arbusto=shrub,./{""Helecho arbóreo"",""Helecho arboreo""}=forb]/value", |
|
38 |
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
|
39 |
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
40 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname", |
|
41 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
42 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname", |
|
43 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
44 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
|
45 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
|
46 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,"Contains less than ""Specie+autor""" |
|
47 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
48 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
49 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2, |
|
50 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
|
51 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
52 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
53 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
|
54 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,"Contains less than ""Specie+autor""" |
|
55 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
|
56 |
Qualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
|
57 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family, |
|
58 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus,Often = Genera |
|
59 |
Specimen,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
60 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
61 |
Number of subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
62 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
63 |
Number of subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
64 |
Basal area,,"** No join mapping for *Basal area ** Would be basalDiameter, but need formula to translate" |
|
65 |
Bole height,,** No join mapping for *Bole height ** trunk height |
|
66 |
Circumference,,** No join mapping for *Circumference ** |
|
67 |
Common name,,** No join mapping for *Common name ** |
|
68 |
Crown position,,** No join mapping for *Crown position ** |
|
69 |
Crown shape,,** No join mapping for *Crown shape ** |
|
70 |
Expedition specimen,,** No join mapping for *Expedition specimen ** |
|
71 |
Number of inventory (expedition),,** No join mapping for *Number of inventory (expedition) ** |
|
72 |
Number of inventory (general),,** No join mapping for *Number of inventory (general) ** |
|
73 |
Phenology,,** No join mapping for *Phenology ** |
|
74 |
Plot X,,** No join mapping for *Plot X ** |
|
75 |
Plot Y,,** No join mapping for *Plot Y ** |
|
76 |
Plot specimen,,** No join mapping for *Plot specimen ** |
|
77 |
Project specimen,,** No join mapping for *Project specimen ** |
|
78 |
Similar specimen,,** No join mapping for *Similar specimen ** |
|
79 |
"Type Inventory (C, PP, TP)",,"** No join mapping for *Type Inventory (C, PP, TP) ** " |
inputs/Madidi/_archive/2010-1-2/Organism/map.csv | ||
---|---|---|
1 |
Madidi,VegCore,Filter,Comments |
|
2 |
Expedition,projectName,, |
|
3 |
Inventory name,locationName,, |
|
4 |
Number of inventory (general),*Number of inventory (general),, |
|
5 |
Number of inventory (expedition),*Number of inventory (expedition),, |
|
6 |
"Type Inventory (C, PP, TP)","*Type Inventory (C, PP, TP)",, |
|
7 |
Inventory code,locationID,, |
|
8 |
Tag number,tag,, |
|
9 |
Tree number,individualCode,, |
|
10 |
Number of subplot,subplot,, |
|
11 |
Index collector,recordedBy,, |
|
12 |
Specimen,catalogNumber,, |
|
13 |
Similar specimen,*Similar specimen,, |
|
14 |
Plot specimen,*Plot specimen,, |
|
15 |
Expedition specimen,*Expedition specimen,, |
|
16 |
Project specimen,*Project specimen,, |
|
17 |
Field family,originalFamily,, |
|
18 |
Field name,originalGenus,,Often = Genera |
|
19 |
Family (revised),family,, |
|
20 |
Specie+autor,scientificName,, |
|
21 |
Genera,genus,, |
|
22 |
Specific epithet,specificEpithet,, |
|
23 |
Species and morphotypes,taxonName,,"Contains less than ""Specie+autor""" |
|
24 |
Autor (revised),scientificNameAuthorship,, |
|
25 |
Determined by,identifiedBy,, |
|
26 |
Qualifier,identificationQualifier,, |
|
27 |
Common name,*Common name,, |
|
28 |
Circumference,*Circumference,, |
|
29 |
Diameter,diameterBreastHeight_cm,,Assuming units based on the range and precision of values |
|
30 |
Trunk,authorStemCode,, |
|
31 |
Total height,height_m,,Assuming units based on the range and precision of values |
|
32 |
Bole height,*Bole height,,trunk height |
|
33 |
Habit,growthForm,"/_map:[./{""Árbol"",Arbol,""Árbolito"",Arbolito,Palmera}=tree,Hemiepifito=hemiepiphyte,Liana=liana,Arbusto=shrub,./{""Helecho arbóreo"",""Helecho arboreo""}=forb]/value", |
|
34 |
Phenology,*Phenology,, |
|
35 |
Crown position,*Crown position,, |
|
36 |
Crown shape,*Crown shape,, |
|
37 |
Liana presence,lianaInfestation,, |
|
38 |
Basal area,*Basal area,,"Would be basalDiameter, but need formula to translate" |
|
39 |
Subplot X,organismX_m,,"Assuming units based on the size of values relative to the plot area, which has units of ha" |
|
40 |
Subplot Y,organismY_m,,"Assuming units based on the size of values relative to the plot area, which has units of ha" |
|
41 |
Plot X,*Plot X,, |
|
42 |
Plot Y,*Plot Y,, |
|
43 |
Observations,fieldNotes,, |
inputs/Madidi/_archive/2010-1-2/Organism/VegBIEN.csv | ||
---|---|---|
1 |
Madidi,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
|
2 |
Specimen,"/_if[@name=""if specimen""]/cond/_exists", |
|
3 |
Number of subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
|
4 |
Inventory name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
|
5 |
Inventory code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
|
6 |
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists", |
|
7 |
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
|
8 |
Specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
|
9 |
Inventory code,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else", |
|
10 |
Inventory name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
|
11 |
Inventory code,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
|
12 |
Number of subplot,/location/authorlocationcode, |
|
13 |
Expedition,/location/locationevent/*_id/project/projectname, |
|
14 |
Number of subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists", |
|
15 |
Number of subplot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/cond/_first/2", |
|
16 |
Inventory name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
|
17 |
Number of subplot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
|
18 |
Inventory code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
|
19 |
Observations,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
|
20 |
Tree number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1, |
|
21 |
Specimen,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
22 |
Specimen,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
|
23 |
Trunk,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode, |
|
24 |
Liana presence,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
|
25 |
Diameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,Assuming units based on the range and precision of values |
|
26 |
Total height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,Assuming units based on the range and precision of values |
|
27 |
Tag number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
|
28 |
Subplot X,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,"Assuming units based on the size of values relative to the plot area, which has units of ha" |
|
29 |
Subplot Y,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,"Assuming units based on the size of values relative to the plot area, which has units of ha" |
|
30 |
Inventory code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
31 |
Inventory name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
32 |
Tree number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/1", |
|
33 |
Tag number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2", |
|
34 |
Specie+autor,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
|
35 |
Species and morphotypes,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3","Contains less than ""Specie+autor""" |
|
36 |
Index collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
|
37 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{""Árbol"",Arbol,""Árbolito"",Arbolito,Palmera}=tree,Hemiepifito=hemiepiphyte,Liana=liana,Arbusto=shrub,./{""Helecho arbóreo"",""Helecho arboreo""}=forb]/value", |
|
38 |
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
|
39 |
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
40 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname", |
|
41 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
42 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname", |
|
43 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
44 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
|
45 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
|
46 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,"Contains less than ""Specie+autor""" |
|
47 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
48 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
49 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2, |
|
50 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
|
51 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
52 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
53 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
|
54 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,"Contains less than ""Specie+autor""" |
|
55 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
|
56 |
Qualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
|
57 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family, |
|
58 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus,Often = Genera |
|
59 |
Specimen,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
60 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
61 |
Number of subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
62 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
63 |
Number of subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
64 |
Basal area,,"** No join mapping for *Basal area ** Would be basalDiameter, but need formula to translate" |
|
65 |
Bole height,,** No join mapping for *Bole height ** trunk height |
|
66 |
Circumference,,** No join mapping for *Circumference ** |
|
67 |
Common name,,** No join mapping for *Common name ** |
|
68 |
Crown position,,** No join mapping for *Crown position ** |
|
69 |
Crown shape,,** No join mapping for *Crown shape ** |
|
70 |
Expedition specimen,,** No join mapping for *Expedition specimen ** |
|
71 |
Number of inventory (expedition),,** No join mapping for *Number of inventory (expedition) ** |
|
72 |
Number of inventory (general),,** No join mapping for *Number of inventory (general) ** |
|
73 |
Phenology,,** No join mapping for *Phenology ** |
|
74 |
Plot X,,** No join mapping for *Plot X ** |
|
75 |
Plot Y,,** No join mapping for *Plot Y ** |
|
76 |
Plot specimen,,** No join mapping for *Plot specimen ** |
|
77 |
Project specimen,,** No join mapping for *Project specimen ** |
|
78 |
Similar specimen,,** No join mapping for *Similar specimen ** |
|
79 |
"Type Inventory (C, PP, TP)",,"** No join mapping for *Type Inventory (C, PP, TP) ** " |
inputs/Madidi/_archive/2010-1-2/Organism/test.xml.ref | ||
---|---|---|
1 |
Put template: |
|
2 |
<VegBIEN> |
|
3 |
<_setDefault id="-1"> |
|
4 |
<source_id><source><shortname>Madidi</shortname></source></source_id> |
|
5 |
<path> |
|
6 |
<_simplifyPath> |
|
7 |
<next>parent_id</next> |
|
8 |
<path> |
|
9 |
<location> |
|
10 |
<parent_id> |
|
11 |
<location> |
|
12 |
<authorlocationcode>$Inventory name</authorlocationcode> |
|
13 |
<sourceaccessioncode>$Inventory code</sourceaccessioncode> |
|
14 |
</location> |
|
15 |
</parent_id> |
|
16 |
<authorlocationcode>$Number of subplot</authorlocationcode> |
|
17 |
<locationevent> |
|
18 |
<project_id><project><projectname>$Expedition</projectname></project></project_id> |
|
19 |
<taxonoccurrence> |
|
20 |
<aggregateoccurrence> |
|
21 |
<notes>$Observations</notes> |
|
22 |
<plantobservation> |
|
23 |
<authorplantcode>$Tree number</authorplantcode> |
|
24 |
<specimenreplicate><catalognumber_dwc>$Specimen</catalognumber_dwc></specimenreplicate> |
|
25 |
<stemobservation> |
|
26 |
<authorstemcode>$Trunk</authorstemcode> |
|
27 |
<definedvalue fkey="tablerecord_id"> |
|
28 |
<userdefined_id> |
|
29 |
<userdefined> |
|
30 |
<tablename>stemobservation</tablename> |
|
31 |
<userdefinedname>lianaInfestation</userdefinedname> |
|
32 |
</userdefined> |
|
33 |
</userdefined_id> |
|
34 |
<definedvalue>$Liana presence</definedvalue> |
|
35 |
</definedvalue> |
|
36 |
<diameterbreastheight_m><_cm_to_m><value>$Diameter</value></_cm_to_m></diameterbreastheight_m> |
|
37 |
<height_m>$Total height</height_m> |
|
38 |
<tag>$Tag number</tag> |
|
39 |
<xposition_m>$Subplot X</xposition_m> |
|
40 |
<yposition_m>$Subplot Y</yposition_m> |
|
41 |
</stemobservation> |
|
42 |
</plantobservation> |
|
43 |
</aggregateoccurrence> |
|
44 |
<authortaxoncode>$Tree number</authortaxoncode> |
|
45 |
<collector_id><party><fullname>$Index collector</fullname></party></collector_id> |
|
46 |
<growthform> |
|
47 |
<_map> |
|
48 |
<Árbol>tree</Árbol> |
|
49 |
<Arbol>tree</Arbol> |
|
50 |
<Árbolito>tree</Árbolito> |
|
51 |
<Arbolito>tree</Arbolito> |
|
52 |
<Palmera>tree</Palmera> |
|
53 |
<Hemiepifito>hemiepiphyte</Hemiepifito> |
|
54 |
<Liana>liana</Liana> |
|
55 |
<Arbusto>shrub</Arbusto> |
|
56 |
<Helecho arbóreo>forb</Helecho arbóreo> |
|
57 |
<Helecho arboreo>forb</Helecho arboreo> |
|
58 |
<value>$Habit</value> |
|
59 |
</_map> |
|
60 |
</growthform> |
|
61 |
<taxondetermination> |
|
62 |
<party_id><party><fullname>$Determined by</fullname></party></party_id> |
|
63 |
<taxonverbatim_id> |
|
64 |
<taxonverbatim> |
|
65 |
<taxonlabel_id> |
|
66 |
<taxonlabel> |
|
67 |
<parent_id> |
|
68 |
<taxonlabel> |
|
69 |
<parent_id> |
|
70 |
<taxonlabel> |
|
71 |
<rank>cultivar</rank> |
|
72 |
<parent_id> |
|
73 |
<taxonlabel> |
|
74 |
<rank>forma</rank> |
|
75 |
<parent_id> |
|
76 |
<taxonlabel> |
|
77 |
<rank>variety</rank> |
|
78 |
<parent_id> |
|
79 |
<taxonlabel> |
|
80 |
<rank>subspecies</rank> |
|
81 |
<parent_id> |
|
82 |
<taxonlabel> |
|
83 |
<rank>species</rank> |
|
84 |
<taxonepithet>$Specific epithet</taxonepithet> |
|
85 |
<parent_id> |
|
86 |
<taxonlabel> |
|
87 |
<rank>genus</rank> |
|
88 |
<taxonepithet>$Genera</taxonepithet> |
|
89 |
<parent_id> |
|
90 |
<taxonlabel> |
|
91 |
<rank>family</rank> |
|
92 |
<taxonepithet>$Family (revised)</taxonepithet> |
|
93 |
</taxonlabel> |
|
94 |
</parent_id> |
|
95 |
</taxonlabel> |
|
96 |
</parent_id> |
|
97 |
</taxonlabel> |
|
98 |
</parent_id> |
|
99 |
</taxonlabel> |
|
100 |
</parent_id> |
|
101 |
</taxonlabel> |
|
102 |
</parent_id> |
|
103 |
</taxonlabel> |
|
104 |
</parent_id> |
|
105 |
</taxonlabel> |
|
106 |
</parent_id> |
|
107 |
</taxonlabel> |
|
108 |
</parent_id> |
|
109 |
<taxonomicname> |
|
110 |
<_merge_prefix> |
|
111 |
<prefix><_taxon_family_require_std><family>$Family (revised)</family></_taxon_family_require_std></prefix> |
|
112 |
<value> |
|
113 |
<_alt> |
|
114 |
<1>$Specie+autor</1> |
|
115 |
<2> |
|
116 |
<_join_words> |
|
117 |
<1> |
|
118 |
<_alt> |
|
119 |
<1>$Species and morphotypes</1> |
|
120 |
<2> |
|
121 |
<_join_words> |
|
122 |
<2>$Genera</2> |
|
123 |
<3>$Specific epithet</3> |
|
124 |
</_join_words> |
|
125 |
</2> |
|
126 |
</_alt> |
|
127 |
</1> |
|
128 |
<2>$Autor (revised)</2> |
|
129 |
</_join_words> |
|
130 |
</2> |
|
131 |
</_alt> |
|
132 |
</value> |
|
133 |
</_merge_prefix> |
|
134 |
</taxonomicname> |
|
135 |
</taxonlabel> |
|
136 |
</taxonlabel_id> |
|
137 |
<author>$Autor (revised)</author> |
|
138 |
<family>$Family (revised)</family> |
|
139 |
<genus>$Genera</genus> |
|
140 |
<specific_epithet>$Specific epithet</specific_epithet> |
|
141 |
<taxonname>$Species and morphotypes</taxonname> |
|
142 |
<taxonomicname>$Specie+autor</taxonomicname> |
|
143 |
</taxonverbatim> |
|
144 |
</taxonverbatim_id> |
|
145 |
<taxonfit>$Qualifier</taxonfit> |
|
146 |
</taxondetermination> |
|
147 |
<taxondetermination> |
|
148 |
<isoriginal>true</isoriginal> |
|
149 |
<taxonverbatim_id> |
|
150 |
<taxonverbatim> |
|
151 |
<family>$Field family</family> |
|
152 |
<genus>$Field name</genus> |
|
153 |
</taxonverbatim> |
|
154 |
</taxonverbatim_id> |
|
155 |
</taxondetermination> |
|
156 |
</taxonoccurrence> |
|
157 |
</locationevent> |
|
158 |
<sourceaccessioncode> |
|
159 |
<_join> |
|
160 |
<1>$Inventory code</1> |
|
161 |
<2>$Number of subplot</2> |
|
162 |
</_join> |
|
163 |
</sourceaccessioncode> |
|
164 |
</location> |
|
165 |
</path> |
|
166 |
</_simplifyPath> |
|
167 |
</path> |
|
168 |
</_setDefault> |
|
169 |
</VegBIEN> |
|
170 |
Inserted 33 new rows into database |
inputs/Madidi/_archive/2010-1-2/Organism/new_terms.csv | ||
---|---|---|
1 |
Expedition,projectName,, |
|
2 |
Inventory name,locationName,, |
|
3 |
Inventory code,locationID,, |
|
4 |
Tag number,tag,, |
|
5 |
Tree number,individualCode,, |
|
6 |
Number of subplot,subplot,, |
|
7 |
Index collector,recordedBy,, |
|
8 |
Specimen,catalogNumber,, |
|
9 |
Field family,originalFamily,, |
|
10 |
Field name,originalGenus,,Often = Genera |
|
11 |
Family (revised),family,, |
|
12 |
Specie+autor,scientificName,, |
|
13 |
Genera,genus,, |
|
14 |
Species and morphotypes,taxonName,,"Contains less than ""Specie+autor""" |
|
15 |
Autor (revised),scientificNameAuthorship,, |
|
16 |
Determined by,identifiedBy,, |
|
17 |
Qualifier,identificationQualifier,, |
|
18 |
Diameter,diameterBreastHeight_cm,,Assuming units based on the range and precision of values |
|
19 |
Trunk,authorStemCode,, |
|
20 |
Total height,height_m,,Assuming units based on the range and precision of values |
|
21 |
Liana presence,lianaInfestation,, |
|
22 |
Observations,fieldNotes,, |
inputs/Madidi/_archive/2010-1-2/Organism/unmapped_terms.csv | ||
---|---|---|
1 |
*Number of inventory (general) |
|
2 |
*Number of inventory (expedition) |
|
3 |
"*Type Inventory (C, PP, TP)" |
|
4 |
*Similar specimen |
|
5 |
*Plot specimen |
|
6 |
*Expedition specimen |
|
7 |
*Project specimen |
|
8 |
*Common name |
|
9 |
*Circumference |
|
10 |
*Bole height |
|
11 |
*Phenology |
|
12 |
*Crown position |
|
13 |
*Crown shape |
|
14 |
*Basal area |
|
15 |
*Plot X |
|
16 |
*Plot Y |
inputs/Madidi/_archive/2010-1-2/Plot/VegBIEN.csv | ||
---|---|---|
1 |
Madidi,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
|
2 |
Inventory name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
|
3 |
Inventory code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
|
4 |
Inventory code,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else", |
|
5 |
Inventory name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
|
6 |
Inventory code,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
|
7 |
Area,/location/area_m2/_ha_to_m2/value,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)" |
|
8 |
Altitude,/location/elevation_m/_alt/1,"Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
9 |
|
|
10 |
[1] Using the following query: |
|
11 |
----- |
|
12 |
SELECT ""Altitude""::real, ""Locality"" |
|
13 |
FROM ""Madidi"".""Plot"" |
|
14 |
WHERE ""Altitude"" IS NOT NULL AND ""Altitude"" != ' 1430' |
|
15 |
GROUP BY ""Altitude""::real , ""Locality"" |
|
16 |
ORDER BY ""Altitude""::real DESC |
|
17 |
----- |
|
18 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
19 |
Minimum altitude,/location/elevation_m/_alt/2/_avg/max/_rangeEnd/value,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
20 |
|
|
21 |
[1] Using the following query: |
|
22 |
----- |
|
23 |
SELECT ""Minimum altitude"", ""Locality"" |
|
24 |
FROM ""Madidi"".""Plot"" |
|
25 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
26 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
27 |
----- |
|
28 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
29 |
Minimum altitude,/location/elevation_m/_alt/2/_avg/min/_rangeStart/value,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
30 |
|
|
31 |
[1] Using the following query: |
|
32 |
----- |
|
33 |
SELECT ""Minimum altitude"", ""Locality"" |
|
34 |
FROM ""Madidi"".""Plot"" |
|
35 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
36 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
37 |
----- |
|
38 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
39 |
Minimum altitude,/location/elevationrange_m/_range/from/_rangeStart/value,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
40 |
|
|
41 |
[1] Using the following query: |
|
42 |
----- |
|
43 |
SELECT ""Minimum altitude"", ""Locality"" |
|
44 |
FROM ""Madidi"".""Plot"" |
|
45 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
46 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
47 |
----- |
|
48 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
49 |
Minimum altitude,/location/elevationrange_m/_range/to/_rangeEnd/value,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
50 |
|
|
51 |
[1] Using the following query: |
|
52 |
----- |
|
53 |
SELECT ""Minimum altitude"", ""Locality"" |
|
54 |
FROM ""Madidi"".""Plot"" |
|
55 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
56 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
57 |
----- |
|
58 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
59 |
Locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1, |
|
60 |
Topographical situation,/location/landform, |
|
61 |
Expedition name,/location/locationevent/*_id/project/projectname,Consistent (globally unique) between PPM and PT data |
|
62 |
Expedition number,/location/locationevent/*_id/project/sourceaccessioncode,Consistent (globally unique) between PPM and PT data |
|
63 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
|
64 |
Inventory name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
|
65 |
Inventory code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
|
66 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
|
67 |
First evaluation,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value", |
|
68 |
Vegetation type,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname, |
|
69 |
Locality description,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,Often begins with the text in Vegetation type |
|
70 |
First evaluation,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
|
71 |
First evaluation,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
|
72 |
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilsample/acidity_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
73 |
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",/location/locationevent/soilsample/calcium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
74 |
"Carbón Orgánico (WSP S-9,10–%–0.06)",/location/locationevent/soilsample/carbon_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
75 |
CIC (ISRIC 11–cmolc/Kg–0.05),/location/locationevent/soilsample/cationexchangecapacity_cmol_kg, |
|
76 |
Arcilla (DIN 18 123–%–1),/location/locationevent/soilsample/clay_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
77 |
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),/location/locationevent/soilsample/conductivity, |
|
78 |
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilsample/magnesium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
79 |
Nitrógeno total (ISRIC 6–%–0.0014),/location/locationevent/soilsample/nitrogen_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
80 |
"Materia Orgánica (WSP S-9,10–%–0.1)",/location/locationevent/soilsample/organic_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
81 |
pH acuoso (ISRIC 4–– 1 - 14),/location/locationevent/soilsample/ph, |
|
82 |
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),/location/locationevent/soilsample/phosphorus_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
83 |
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",/location/locationevent/soilsample/potassium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
84 |
Arena (DIN 18 123–%–2.5),/location/locationevent/soilsample/sand_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
85 |
Limo (DIN 18 123–%–1),/location/locationevent/soilsample/silt_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
86 |
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",/location/locationevent/soilsample/sodium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values |
|
87 |
Textural class,/location/locationevent/soilsample/texture, |
|
88 |
Inventory code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
89 |
Inventory name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
90 |
Locality,/location/locationnarrative/_merge/1, |
|
91 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
92 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
93 |
Latitude (DMS),/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude, |
|
94 |
Longitude (DMS),/location/locationplace/*_id/place/*_id/coordinates/verbatimlongitude, |
|
95 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
|
96 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
|
97 |
Observaciones,/location/notespublic, |
|
98 |
Direction,/location/slopeaspect_deg/_alt/1/_compass/value/_alt/1,Part files provide either this field or Orientación |
|
99 |
Orientación/exposicion,/location/slopeaspect_deg/_alt/1/_compass/value/_alt/2,Part files provide either this field or Direction |
|
100 |
Slope,/location/slopegradient_fraction/_alt/1, |
|
101 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
102 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
103 |
Minimum altitude,/location/verbatimelevation,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
104 |
|
|
105 |
[1] Using the following query: |
|
106 |
----- |
|
107 |
SELECT ""Minimum altitude"", ""Locality"" |
|
108 |
FROM ""Madidi"".""Plot"" |
|
109 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
110 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
111 |
----- |
|
112 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
113 |
Collaborators,,"** No join mapping for *Collaborators ** Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
|
114 |
Coordinates,,** No join mapping for *Coordinates ** Concatenation of Latitude (DMS) and Longitude (DMS) |
|
115 |
Installed and evaluated by,,"** No join mapping for *Installed and evaluated by ** Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
|
116 |
Inventory number,,** No join mapping for *Inventory number ** Not globally unique |
|
117 |
Number of inventory (expedition),,** No join mapping for *Number of inventory (expedition) ** The number of the event within the project |
|
118 |
Number of stems,,** No join mapping for *Number of stems ** Do we want to store this data? |
|
119 |
Number of trees,,** No join mapping for *Number of trees ** Do we want to store this data? |
|
120 |
Related Epilocs,,"** No join mapping for *Related Epilocs ** It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots." |
|
121 |
Soil sample,,** No join mapping for *Soil sample ** Always empty |
inputs/Madidi/_archive/2010-1-2/Plot/map.csv | ||
---|---|---|
1 |
Madidi,VegCore,Filter,Comments |
|
2 |
Inventory number,*Inventory number,,Not globally unique |
|
3 |
Expedition number,projectID,,Consistent (globally unique) between PPM and PT data |
|
4 |
Expedition name,projectName,,Consistent (globally unique) between PPM and PT data |
|
5 |
Number of inventory (expedition),*Number of inventory (expedition),,The number of the event within the project |
|
6 |
Inventory name,locationName,, |
|
7 |
Inventory code,locationID,, |
|
8 |
First evaluation,eventDate,, |
|
9 |
Installed and evaluated by,*Installed and evaluated by,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
|
10 |
Collaborators,*Collaborators,,"Need a way to store a verbatim list of people, or a function to parse it and insert it iteratively into party" |
|
11 |
Related Epilocs,*Related Epilocs,,"It appears to be a list of people, some with #s after them. It doesn't seem like the definition of Epiloc at <http://rithm.wikispaces.com/Tropicos.Epiloc>, which relates to individual specimens, not whole plots." |
|
12 |
Area,plotArea_ha,,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)" |
|
13 |
Number of stems,*Number of stems,,Do we want to store this data? |
|
14 |
Number of trees,*Number of trees,,Do we want to store this data? |
|
15 |
Coordinates,*Coordinates,,Concatenation of Latitude (DMS) and Longitude (DMS) |
|
16 |
Latitude,decimalLatitude,, |
|
17 |
Longitude,decimalLongitude,, |
|
18 |
Latitude (DMS),latitude_DMS,, |
|
19 |
Longitude (DMS),longitude_DMS,, |
|
20 |
Altitude,elevationInMeters,,"Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
21 |
|
|
22 |
[1] Using the following query: |
|
23 |
----- |
|
24 |
SELECT ""Altitude""::real, ""Locality"" |
|
25 |
FROM ""Madidi"".""Plot"" |
|
26 |
WHERE ""Altitude"" IS NOT NULL AND ""Altitude"" != ' 1430' |
|
27 |
GROUP BY ""Altitude""::real , ""Locality"" |
|
28 |
ORDER BY ""Altitude""::real DESC |
|
29 |
----- |
|
30 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
31 |
Minimum altitude,verbatimElevation_m,,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
32 |
|
|
33 |
[1] Using the following query: |
|
34 |
----- |
|
35 |
SELECT ""Minimum altitude"", ""Locality"" |
|
36 |
FROM ""Madidi"".""Plot"" |
|
37 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
38 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
39 |
----- |
|
40 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
41 |
Locality,locality,, |
|
42 |
Locality description,communityName,,Often begins with the text in Vegetation type |
|
43 |
Direction,slopeAspect,/_alt/1,Part files provide either this field or Orientación |
|
44 |
Vegetation type,communityID,, |
|
45 |
Topographical situation,landform,, |
|
46 |
Slope,slopeGradient,, |
|
47 |
Soil sample,*Soil sample,,Always empty |
|
48 |
pH acuoso (ISRIC 4–– 1 - 14),ph,, |
|
49 |
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,, |
|
50 |
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen_percent,,Assuming units are % based on the range of values |
|
51 |
"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon_percent,,Assuming units are % based on the range of values |
|
52 |
"Materia Orgánica (WSP S-9,10–%–0.1)",organic_percent,,Assuming units are % based on the range of values |
|
53 |
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus_percent,,Assuming units are % based on the range of values |
|
54 |
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium_percent,,Assuming units are % based on the range of values |
|
55 |
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium_percent,,Assuming units are % based on the range of values |
|
56 |
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium_percent,,Assuming units are % based on the range of values |
|
57 |
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium_percent,,Assuming units are % based on the range of values |
|
58 |
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity_percent,,Assuming units are % based on the range of values |
|
59 |
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity_cmol_kg,, |
|
60 |
Arena (DIN 18 123–%–2.5),sand_percent,,Assuming units are % based on the range of values |
|
61 |
Limo (DIN 18 123–%–1),silt_percent,,Assuming units are % based on the range of values |
|
62 |
Arcilla (DIN 18 123–%–1),clay_percent,,Assuming units are % based on the range of values |
|
63 |
Textural class,texture,, |
|
64 |
Observaciones,plotNotes,, |
|
65 |
Orientación/exposicion,slopeAspect,/_alt/2,Part files provide either this field or Direction |
inputs/Madidi/_archive/2010-1-2/Plot/new_terms.csv | ||
---|---|---|
1 |
Expedition number,projectID,,Consistent (globally unique) between PPM and PT data |
|
2 |
Expedition name,projectName,,Consistent (globally unique) between PPM and PT data |
|
3 |
Inventory name,locationName,, |
|
4 |
Inventory code,locationID,, |
|
5 |
First evaluation,eventDate,, |
|
6 |
Area,plotArea_ha,,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)" |
|
7 |
Altitude,elevationInMeters,,"Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
8 |
|
|
9 |
[1] Using the following query: |
|
10 |
----- |
|
11 |
SELECT ""Altitude""::real, ""Locality"" |
|
12 |
FROM ""Madidi"".""Plot"" |
|
13 |
WHERE ""Altitude"" IS NOT NULL AND ""Altitude"" != ' 1430' |
|
14 |
GROUP BY ""Altitude""::real , ""Locality"" |
|
15 |
ORDER BY ""Altitude""::real DESC |
|
16 |
----- |
|
17 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
18 |
Minimum altitude,verbatimElevation_m,,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
|
19 |
|
|
20 |
[1] Using the following query: |
|
21 |
----- |
|
22 |
SELECT ""Minimum altitude"", ""Locality"" |
|
23 |
FROM ""Madidi"".""Plot"" |
|
24 |
WHERE ""Minimum altitude"" IS NOT NULL |
|
25 |
GROUP BY ""Minimum altitude"" , ""Locality"" |
|
26 |
----- |
|
27 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
|
28 |
Locality description,communityName,,Often begins with the text in Vegetation type |
|
29 |
Direction,slopeAspect,/_alt/1,Part files provide either this field or Orientación |
|
30 |
Vegetation type,communityID,, |
|
31 |
Topographical situation,landform,, |
|
32 |
Slope,slopeGradient,, |
|
33 |
pH acuoso (ISRIC 4–– 1 - 14),ph,, |
|
34 |
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,, |
|
35 |
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen_percent,,Assuming units are % based on the range of values |
Also available in: Unified diff
inputs/Madidi/: Refreshed. Note that new export has a completely new schema.