| 1 |
6406
|
aaronmk
|
REMIB,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
| 2 |
6409
|
aaronmk
|
accession_number,"/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 3 |
|
|
|
| 4 |
|
|
[1] Using the following query:
|
| 5 |
|
|
-----
|
| 6 |
|
|
SELECT acronym, accession_number, count(*)
|
| 7 |
|
|
FROM ""REMIB"".""Specimen""
|
| 8 |
|
|
GROUP BY acronym, accession_number
|
| 9 |
|
|
HAVING count(*) > 1
|
| 10 |
|
|
-----"
|
| 11 |
|
|
acronym,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
|
| 12 |
6756
|
aaronmk
|
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 13 |
4950
|
aaronmk
|
|
| 14 |
|
|
[1] Using the following query:
|
| 15 |
|
|
-----
|
| 16 |
|
|
SELECT acronym, accession_number, count(*)
|
| 17 |
|
|
FROM ""REMIB"".""Specimen""
|
| 18 |
|
|
GROUP BY acronym, accession_number
|
| 19 |
|
|
HAVING count(*) > 1
|
| 20 |
|
|
-----"
|
| 21 |
6756
|
aaronmk
|
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 22 |
6375
|
aaronmk
|
|
| 23 |
|
|
[1] Using the following query:
|
| 24 |
|
|
-----
|
| 25 |
|
|
SELECT acronym, accession_number, count(*)
|
| 26 |
|
|
FROM ""REMIB"".""Specimen""
|
| 27 |
|
|
GROUP BY acronym, accession_number
|
| 28 |
|
|
HAVING count(*) > 1
|
| 29 |
|
|
-----"
|
| 30 |
6756
|
aaronmk
|
acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then",
|
| 31 |
|
|
accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 32 |
4950
|
aaronmk
|
|
| 33 |
|
|
[1] Using the following query:
|
| 34 |
|
|
-----
|
| 35 |
|
|
SELECT acronym, accession_number, count(*)
|
| 36 |
|
|
FROM ""REMIB"".""Specimen""
|
| 37 |
|
|
GROUP BY acronym, accession_number
|
| 38 |
|
|
HAVING count(*) > 1
|
| 39 |
|
|
-----"
|
| 40 |
6432
|
aaronmk
|
locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
|
| 41 |
|
|
habitat,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
|
| 42 |
4566
|
aaronmk
|
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
| 43 |
|
|
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
| 44 |
|
|
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
| 45 |
4950
|
aaronmk
|
accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 46 |
|
|
|
| 47 |
|
|
[1] Using the following query:
|
| 48 |
|
|
-----
|
| 49 |
|
|
SELECT acronym, accession_number, count(*)
|
| 50 |
|
|
FROM ""REMIB"".""Specimen""
|
| 51 |
|
|
GROUP BY acronym, accession_number
|
| 52 |
|
|
HAVING count(*) > 1
|
| 53 |
|
|
-----"
|
| 54 |
6791
|
aaronmk
|
accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 55 |
6375
|
aaronmk
|
|
| 56 |
|
|
[1] Using the following query:
|
| 57 |
|
|
-----
|
| 58 |
|
|
SELECT acronym, accession_number, count(*)
|
| 59 |
|
|
FROM ""REMIB"".""Specimen""
|
| 60 |
|
|
GROUP BY acronym, accession_number
|
| 61 |
|
|
HAVING count(*) > 1
|
| 62 |
|
|
-----"
|
| 63 |
6791
|
aaronmk
|
acronym,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name",
|
| 64 |
6795
|
aaronmk
|
acronym,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_split:[separator="", ""]/value",
|
| 65 |
6171
|
aaronmk
|
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
| 66 |
5657
|
aaronmk
|
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
| 67 |
6179
|
aaronmk
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
|
| 68 |
5657
|
aaronmk
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
| 69 |
6179
|
aaronmk
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
|
| 70 |
5657
|
aaronmk
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
| 71 |
7142
|
aaronmk
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
| 72 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
| 73 |
|
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
| 74 |
5657
|
aaronmk
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
| 75 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
| 76 |
5783
|
aaronmk
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
| 77 |
4950
|
aaronmk
|
accession_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 78 |
|
|
|
| 79 |
|
|
[1] Using the following query:
|
| 80 |
|
|
-----
|
| 81 |
|
|
SELECT acronym, accession_number, count(*)
|
| 82 |
|
|
FROM ""REMIB"".""Specimen""
|
| 83 |
|
|
GROUP BY acronym, accession_number
|
| 84 |
|
|
HAVING count(*) > 1
|
| 85 |
|
|
-----"
|
| 86 |
3969
|
aaronmk
|
locality,/location/locationnarrative/_merge/1,
|
| 87 |
|
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
|
| 88 |
5861
|
aaronmk
|
lat_deg,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
|
| 89 |
|
|
long_deg,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
|
| 90 |
5855
|
aaronmk
|
country,/location/locationplace/*_id/place/country,
|
| 91 |
|
|
county,/location/locationplace/*_id/place/county,
|
| 92 |
6179
|
aaronmk
|
lat_deg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 93 |
|
|
long_deg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 94 |
|
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
| 95 |
6294
|
aaronmk
|
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
| 96 |
6179
|
aaronmk
|
state,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
| 97 |
5855
|
aaronmk
|
state,/location/locationplace/*_id/place/stateprovince,
|
| 98 |
4979
|
aaronmk
|
lat_min,,** No join mapping for *lat_min **
|
| 99 |
|
|
lat_sec,,** No join mapping for *lat_sec **
|
| 100 |
|
|
long_min,,** No join mapping for *long_min **
|
| 101 |
|
|
long_sec,,** No join mapping for *long_sec **
|
| 102 |
4638
|
aaronmk
|
preparation,,** No join mapping for preparations **
|
