Revision 724
Added by Aaron Marcuse-Kubitza almost 13 years ago
| inputs/input.Makefile | ||
|---|---|---|
| 16 | 16 |
CP = cp -p |
| 17 | 17 |
DIFF = diff --unified=2 |
| 18 | 18 |
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| 19 |
tablesSort := plots organisms stems |
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| 20 |
vegxMaps := $(wildcard $(tablesSort:%=maps/VegX.%.csv)) |
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| 21 |
vegxMaps += $(filter-out $(vegxMaps),$(wildcard maps/VegX.*.csv)) |
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tables := $(vegxMaps:maps/VegX.%.csv=%) |
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| 23 |
vegbienMaps := $(subst VegX.,VegBIEN.,$(vegxMaps)) |
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# Config |
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test_n ?= 2 |
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tablesSort ?= plots organisms stems |
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| 22 |
|
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# Paths |
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viaMaps := $(filter-out maps/VegBIEN.%.csv,$(wildcard maps/*.csv)) |
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via := $(firstword $(sort $(basename $(basename $(notdir $(viaMaps)))))) |
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viaMapsSort := $(wildcard $(tablesSort:%=maps/$(via).%.csv)) |
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viaMaps := $(viaMapsSort) $(filter-out $(viaMapsSort),$(viaMaps)) |
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tables := $(viaMaps:maps/$(via).%.csv=%) |
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directMaps := $(subst $(via).,VegBIEN.,$(viaMaps)) |
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directMaps += $(filter-out $(directMaps),$(wildcard maps/VegBIEN.*.csv)) |
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| 24 | 31 |
dbFile := $(firstword $(wildcard src/db.*.sql)) |
| 25 | 32 |
|
| 26 | 33 |
+maps = $(filter maps/%,$(+_)) |
| ... | ... | |
| 29 | 36 |
root := $(selfDir_uZPPqC).. |
| 30 | 37 |
psqlAsBien := $(root)/bin/psql_vegbien |
| 31 | 38 |
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# Config |
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test_n ?= 2 |
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|
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| 35 | 39 |
##### |
| 36 | 40 |
|
| 37 | 41 |
all: _always maps ; |
| ... | ... | |
| 59 | 63 |
|
| 60 | 64 |
##### |
| 61 | 65 |
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maps: $(vegbienMaps) _always ;
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maps: $(directMaps) _always ;
|
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| 63 | 67 |
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all += $(vegbienMaps)
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all += $(directMaps)
|
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| 65 | 69 |
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maps/VegBIEN.%.csv: maps/VegX.%.csv $(root)/mappings/VegX-VegBIEN.%.csv
|
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maps/VegBIEN.%.csv: maps/$(via).%.csv $(root)/mappings/$(via)-VegBIEN.%.csv
|
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| 67 | 71 |
$(root)/bin/join_sort <$+ >$@ |
| 68 | 72 |
.PRECIOUS: maps/VegBIEN.%.csv |
| 69 | 73 |
|
| ... | ... | |
| 78 | 82 |
$(if $(n),,>>$(log)) 2>&1$(if $(n),|tee -a $(log)) |
| 79 | 83 |
# ignore import errors, which are often benign (e.g. invalid date format) |
| 80 | 84 |
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import-all: $(vegbienMaps) _always
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import-all: $(directMaps) _always
|
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| 82 | 86 |
$(import) |
| 83 | 87 |
|
| 84 | 88 |
import-%: maps/VegBIEN.%.csv _always |
| ... | ... | |
| 118 | 122 |
|
| 119 | 123 |
ifneq ($(wildcard test/),) |
| 120 | 124 |
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tests := test/VegX.xml test/VegBIEN.xml test/VegBIEN.2-step.xml test/import.out
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tests := |
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| 122 | 126 |
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test: _always $(tests) ; |
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.PRECIOUS: $(tests) |
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all += $(tests) |
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|
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| 129 | 127 |
hasOwnRef = $(filter-out %.2-step.xml,$@) |
| 130 | 128 |
testRef = $(1:.2-step.xml=.xml).ref |
| 131 | 129 |
|
| ... | ... | |
| 137 | 135 |
exit $$e;} |
| 138 | 136 |
endef |
| 139 | 137 |
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test/VegX.xml: $(vegxMaps) _always
|
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test/$(via).xml: $(viaMaps) _always
|
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| 141 | 139 |
$(call test,$(map)) |
| 140 |
tests += test/$(via).xml |
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| 142 | 141 |
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test/VegBIEN.xml: $(vegbienMaps) _always
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test/VegBIEN.xml: $(directMaps) _always
|
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| 144 | 143 |
$(call test,$(map)) |
| 144 |
tests += test/VegBIEN.xml |
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| 145 | 145 |
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test/VegBIEN.2-step.xml: test/VegX.xml\
|
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$(root)/mappings/VegX-VegBIEN.organisms.csv _always
|
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test/VegBIEN.2-step.xml: test/$(via).xml\
|
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$(root)/mappings/$(via)-VegBIEN.organisms.csv _always
|
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| 148 | 148 |
-$(call test,$(root)/map) |
| 149 | 149 |
# Don't abort tester if only 2-step test fails, as it's often finicky |
| 150 |
tests += test/VegBIEN.2-step.xml |
|
| 150 | 151 |
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test/import.out: $(vegbienMaps) _always
|
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test/import.out: $(directMaps) _always
|
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| 152 | 153 |
$(call test,$(map2db)) |
| 154 |
tests += test/import.out |
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| 153 | 155 |
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test: _always $(tests) ; |
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.PRECIOUS: $(tests) |
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|
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all += $(tests) |
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|
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| 154 | 162 |
# Accepts a test output: make <test_output_path>-ok |
| 155 | 163 |
%-ok: _always |
| 156 | 164 |
$(CP) $* $(call testRef,$*) |
Also available in: Unified diff
input.Makefile: Generalized to handle mapping via any format, not just VegX