| 1 |
1 |
UNCC,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
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| 2 |
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accession,"/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
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2 |
accession,"/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1] Bob says this is actually the catalogNumber.
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| 3 |
3 |
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| 4 |
4 |
[1] Using the following query:
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| 5 |
5 |
-----
|
| ... | ... | |
| 9 |
9 |
HAVING count(*) > 1
|
| 10 |
10 |
-----"
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| 11 |
11 |
herbarium,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
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| 12 |
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accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1","Globally unique, although occasionally duplicated. [1]
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12 |
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists","Globally unique, although occasionally duplicated. [1] Bob says this is actually the catalogNumber.
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| 13 |
13 |
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| 14 |
14 |
[1] Using the following query:
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| 15 |
15 |
-----
|
| ... | ... | |
| 18 |
18 |
GROUP BY herbarium, accession
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| 19 |
19 |
HAVING count(*) > 1
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| 20 |
20 |
-----"
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| 21 |
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accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
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21 |
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1] Bob says this is actually the catalogNumber.
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| 22 |
22 |
|
| 23 |
23 |
[1] Using the following query:
|
| 24 |
24 |
-----
|
| ... | ... | |
| 28 |
28 |
HAVING count(*) > 1
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| 29 |
29 |
-----"
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| 30 |
30 |
herbarium,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then",
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| 31 |
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accession,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
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31 |
accession,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Globally unique, although occasionally duplicated. [1] Bob says this is actually the catalogNumber.
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| 32 |
32 |
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| 33 |
33 |
[1] Using the following query:
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| 34 |
34 |
-----
|
| ... | ... | |
| 52 |
52 |
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/6/_label[label=""loaned to""]/value",
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| 53 |
53 |
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/7/_label[label=""in or out""]/value",
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| 54 |
54 |
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
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| 55 |
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collectno,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
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| 56 |
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accession,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
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55 |
accession,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Globally unique, although occasionally duplicated. [1] Bob says this is actually the catalogNumber.
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| 57 |
56 |
|
| 58 |
57 |
[1] Using the following query:
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| 59 |
58 |
-----
|
| ... | ... | |
| 62 |
61 |
GROUP BY herbarium, accession
|
| 63 |
62 |
HAVING count(*) > 1
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| 64 |
63 |
-----"
|
| 65 |
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herbarium,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name",
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| 66 |
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herbarium,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_split:[separator="", ""]/value",
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| 67 |
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accession,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,"Globally unique, although occasionally duplicated. [1]
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64 |
collectno,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
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65 |
accession,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists","Globally unique, although occasionally duplicated. [1] Bob says this is actually the catalogNumber.
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| 68 |
66 |
|
| 69 |
67 |
[1] Using the following query:
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| 70 |
68 |
-----
|
| ... | ... | |
| 73 |
71 |
GROUP BY herbarium, accession
|
| 74 |
72 |
HAVING count(*) > 1
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| 75 |
73 |
-----"
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74 |
herbarium,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name",
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75 |
herbarium,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_split:[separator="", ""]/value",
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| 76 |
76 |
collectno,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
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| 77 |
77 |
SciName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
|
| 78 |
78 |
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/1,
|
| 79 |
79 |
collector1,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/2,
|
| 80 |
80 |
collector2,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/3,
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| 81 |
81 |
collector3,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/4,
|
| 82 |
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accession,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists","Globally unique, although occasionally duplicated. [1]
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| 83 |
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|
| 84 |
|
[1] Using the following query:
|
| 85 |
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-----
|
| 86 |
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SELECT herbarium, accession, count(*)
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| 87 |
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FROM ""UNCC"".""Specimen""
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| 88 |
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GROUP BY herbarium, accession
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| 89 |
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HAVING count(*) > 1
|
| 90 |
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-----"
|
| 91 |
82 |
collectno,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 92 |
83 |
cultivated,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_alt/2",Ignore other values
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| 93 |
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accession,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,"Globally unique, although occasionally duplicated. [1]
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| 94 |
|
|
| 95 |
|
[1] Using the following query:
|
| 96 |
|
-----
|
| 97 |
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SELECT herbarium, accession, count(*)
|
| 98 |
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FROM ""UNCC"".""Specimen""
|
| 99 |
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GROUP BY herbarium, accession
|
| 100 |
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HAVING count(*) > 1
|
| 101 |
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-----"
|
| 102 |
84 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/1",
|
| 103 |
85 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/2",
|
| 104 |
86 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
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| ... | ... | |
| 125 |
107 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
|
| 126 |
108 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/1,
|
| 127 |
109 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/2,
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110 |
accession,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Globally unique, although occasionally duplicated. [1] Bob says this is actually the catalogNumber.
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|
111 |
|
|
112 |
[1] Using the following query:
|
|
113 |
-----
|
|
114 |
SELECT herbarium, accession, count(*)
|
|
115 |
FROM ""UNCC"".""Specimen""
|
|
116 |
GROUP BY herbarium, accession
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|
117 |
HAVING count(*) > 1
|
|
118 |
-----"
|
| 128 |
119 |
collectno,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
| 129 |
120 |
locality,/location/locationnarrative/_merge/1,
|
| 130 |
121 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
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inputs/UNCC/Specimen/map.csv: accession: Remapped to catalogNumber per Bob's corrections