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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7326 almost 12 years Aaron Marcuse-Kubitza backups/Makefile: %.md5/test: Added comment to ...
  bin 7431 almost 12 years Aaron Marcuse-Kubitza Added redmine_synonyms, which translates a Redm...
  config 7390 almost 12 years Aaron Marcuse-Kubitza config/: Set svn:ignore to exclude *password files
  inputs 7433 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: institutionCode l...
  lib 7397 almost 12 years Aaron Marcuse-Kubitza xml_dom.py: replace_with_text(): Added support ...
  mappings 7433 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: institutionCode l...
  schemas 7421 almost 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: analytical_stem_view: scie...
  to_do 7355 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.2013.xls: Updated with changes d...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 11.9 KB 7423 almost 12 years Aaron Marcuse-Kubitza root Makefile: misc-Linux: Added command to cop...
README.TXT 18 KB 7410 almost 12 years Aaron Marcuse-Kubitza README.TXT: Full database import: Updated time ...
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
7433 02/04/2013 11:03 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: institutionCode list->sourcename mapping: _split(): Also match ; as a separator, and match separators with or without a following space

7432 02/02/2013 05:39 PM Aaron Marcuse-Kubitza

mappings/Makefile: Added target to create Veg+-VegCore.csv from VegCore.htm, initially commented out until all the synonyms in the existing Veg+-VegCore.csv are added to the VegCore data dictionary <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore_data_dictionary>

7431 02/02/2013 05:38 PM Aaron Marcuse-Kubitza

Added redmine_synonyms, which translates a Redmine HTML page to a thesaurus

7430 02/02/2013 04:37 PM Aaron Marcuse-Kubitza

lockfile: Linux: Documented why newgrp and recursive invocation of lockfile are needed

7429 02/02/2013 04:33 PM Aaron Marcuse-Kubitza

lockfile: Linux: Fixed bug where need to change primary group of the dotlockfile process to the group of the dir to contain the lockfile, because dotlockfile otherwise reports a "permission denied" error (even though the directory is actually writable, dotlockfile thinks it isn't). Running dotlockfile with a different primary group is complicated because newgrp, the command that does this, does not pass arguments to the new process, so they must instead be passed via environment variables and a recursive invocation of lockfile (with the $inner recursion flag set). Additionally, exec cannot be used to propagate the PPID (needed by dotlockfile) because newgrp creates a new process rather than using exec, so it must be manually entered into the lockfile after dotlockfile runs.

7428 02/02/2013 02:41 PM Aaron Marcuse-Kubitza

lockfile: Linux: Fixed bug where need to lower retry count to avoid overflowing the retries variable

7427 02/02/2013 02:37 PM Aaron Marcuse-Kubitza

lockfile: Linux: Added workaround for bug in dotlockfile where using -1 to retry indefinitely doesn't work, so need to use large integer instead

7426 02/02/2013 01:49 PM Aaron Marcuse-Kubitza

lockfile: Linux: Use bin/dotlockfile instead of the system's dotlockfile, because the system's dotlockfile is SETGID mail, which prevents it from creating lockfiles in a directory owned by the bien user and group when being run by the login user

7425 02/02/2013 01:38 PM Aaron Marcuse-Kubitza

bin/: svn:ignore: Added dotlockfile, which is copied from the system during installation

7424 02/02/2013 01:30 PM Aaron Marcuse-Kubitza

bin/: svn:ignore: Removed no longer applicable test_output

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