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1
|
coreMaps := DwC-VegBIEN.organisms.csv VegX-VegBIEN.organisms.csv
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2
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chRootMaps := VegX-VegBIEN.plots.csv VegX-VegBIEN.stems.csv
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3
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joinedMaps := $(filter-out DwC-% VegX-%,$(wildcard *-VegBIEN.*.csv))
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4
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all := $(wildcard for_review/*) $(joinedMaps) $(chRootMaps)
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5
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|
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6
|
all: _always $(coreMaps) $(chRootMaps)
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7
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@#./join DwC VegBIEN
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8
|
./join VegX VegBIEN
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|
9
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./review
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|
10
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|
11
|
.SUFFIXES:
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12
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13
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_always:
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14
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.PHONY: _always
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|
15
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16
|
clean: _always
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17
|
$(RM) $(all)
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|
18
|
|
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19
|
remake: _always clean all ;
|
|
20
|
|
|
21
|
#####
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|
22
|
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23
|
bin := ../bin
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|
24
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|
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25
|
$(coreMaps): _always
|
|
26
|
$(bin)/in_place $@ $(bin)/simplify_xpath
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27
|
$(bin)/in_place $@ $(bin)/sort 1 0
|
|
28
|
|
|
29
|
#####
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|
30
|
|
|
31
|
chRoot = $(bin)/ch_root <$< >$@
|
|
32
|
|
|
33
|
VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
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|
34
|
env \
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|
35
|
left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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|
36
|
left_out_root='/*s/plotObservation' \
|
|
37
|
right_in_root='/taxonoccurrence/*_id/locationevent' \
|
|
38
|
right_out_root='/locationevent' \
|
|
39
|
$(chRoot)
|
|
40
|
|
|
41
|
VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
|
|
42
|
env \
|
|
43
|
left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
|
44
|
left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
|
|
45
|
right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \
|
|
46
|
right_out_root='/stemobservation' \
|
|
47
|
$(chRoot)
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