Revision 7463
Added by Aaron Marcuse-Kubitza almost 12 years ago
inputs/bien2_traits/TraitObservation/map.csv | ||
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12 | 12 |
TraitName,measurementType,, |
13 | 13 |
TraitValue,measurementValue,, |
14 | 14 |
Unit,measurementUnit,, |
15 |
Method,Method,,
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|
15 |
Method,method,,
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|
16 | 16 |
Region,*Region,, |
17 | 17 |
Country,country,, |
18 | 18 |
StateProvince,stateProvince,, |
inputs/bien2_traits/TraitObservation/VegBIEN.csv | ||
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48 | 48 |
AuthorshipContact,,** No join mapping for *AuthorshipContact ** |
49 | 49 |
Family_index,,** No non-empty join mapping for OMIT ** |
50 | 50 |
LowerPolitical,,** No join mapping for *LowerPolitical ** |
51 |
Method,,** No join mapping for Method **
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51 |
Method,,** No join mapping for method **
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|
52 | 52 |
Observation,,** No join mapping for *Observation ** |
53 | 53 |
Project_PI,,** No join mapping for *Project_PI ** |
54 | 54 |
Project_PI_contact,,** No join mapping for *Project_PI_contact ** |
inputs/bien2_traits/TraitObservation/unmapped_terms.csv | ||
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1 |
Method
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1 |
method
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|
2 | 2 |
*Region |
3 | 3 |
*LowerPolitical |
4 | 4 |
*Source |
inputs/TEAM/VL/new_terms.csv | ||
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1 | 1 |
Observation Date,eventDate,, |
2 | 2 |
Names of Collectors,recordedBy,, |
3 | 3 |
Diameter at 1.3m,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)" |
4 |
Method,OMIT,,"Just contains ""Derived"", for 357 rows" |
|
5 | 4 |
Subplot Number,subplot,, |
6 | 5 |
1ha Plot X Coordinate,organismX_m,,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)" |
7 | 6 |
1ha Plot Y Coordinate,organismY_m,,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)" |
inputs/SALVIAS/stems/new_terms.csv | ||
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1 | 1 |
PlotObsID,individualID,, |
2 | 2 |
NoInd,stemCount,, |
3 |
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for plotObservations.intercept_cm, which measures the same dimension" |
|
4 | 3 |
stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
5 |
stem_tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other." |
|
6 | 4 |
stem_height_m,height_m,,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare." |
7 | 5 |
stem_height_first_branch_m,heightFirstBranch,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare." |
8 | 6 |
plotobs_id_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation |
inputs/SALVIAS-CSV/Organism/new_terms.csv | ||
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21 | 21 |
cf_aff,identificationQualifier,,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
22 | 22 |
no_of_individuals,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this." |
23 | 23 |
stem_tag1,tag,/_alt/1/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems." |
24 |
stem_tag2,tag,/_alt/1/_alt/1,The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: see above |
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25 |
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension" |
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26 | 24 |
stem_height_m,height_m,/_alt/1,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare." |
27 | 25 |
stem_height_first_branch_m,heightFirstBranch,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare." |
28 | 26 |
orig_family,originalFamily,,Brad: OMIT |
inputs/SALVIAS-CSV/Plot/new_terms.csv | ||
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9 | 9 |
elev_m,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick. |
10 | 10 |
elev_max_m,maximumElevationInMeters,, |
11 | 11 |
elev_min_m,minimumElevationInMeters,, |
12 |
temp_c,temperature,, |
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13 | 12 |
soil_N,nitrogen_percent,,Assuming units are % based on the range of values |
14 | 13 |
soil_P,phosphorus_percent,"/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values |
15 | 14 |
soil_K,potassium_percent,,Assuming units are % based on the range of values |
... | ... | |
17 | 16 |
soil_base,baseSaturation_percent,,Assuming units are % based on the range of values |
18 | 17 |
holdridge_life_zone,communityID,, |
19 | 18 |
life_zone_code,communityName,, |
20 |
plot_methodology,samplingProtocol,, |
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21 | 19 |
date_start,startDate,, |
22 | 20 |
date_finish,endDate,, |
inputs/CVS/stemCount_/new_terms.csv | ||
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2 | 2 |
cover,coverPercent,, |
3 | 3 |
STEMCOUNT_ID,aggregateOccurrenceID,, |
4 | 4 |
stemDiameter,diameterBreastHeight_cm,, |
5 |
stemHeight,height_m,, |
inputs/CVS/observation_/new_terms.csv | ||
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1 | 1 |
OBSERVATION_ID,eventID,, |
2 | 2 |
methodNarrative,samplingProtocol,, |
3 |
soilOrganic,organic_percent,, |
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4 |
soilSand,sand_percent,, |
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5 |
soilSilt,silt_percent,, |
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6 |
soilClay,clay_percent,, |
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7 | 3 |
soilPH,ph,, |
inputs/CVS/stemLocation_/new_terms.csv | ||
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1 | 1 |
STEMCOUNT_ID,aggregateOccurrenceID,, |
2 | 2 |
taxonImportance_ID,OMIT,,Omitted because STEMCOUNT_ID is more specific |
3 | 3 |
stemDiameter,diameterBreastHeight_cm,, |
4 |
stemHeight,height_m,, |
|
5 | 4 |
STEMLOCATION_ID,stemID,, |
6 | 5 |
STEMLOCATION_ID,individualID,, |
7 | 6 |
stemXPosition,organismX_m,, |
inputs/NVS/Coordinates/map.csv | ||
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2 | 2 |
Plot Obs ID,*Plot Obs ID,, |
3 | 3 |
Project Abbreviation,projectName,, |
4 | 4 |
Plot,locationName,, |
5 |
Method,*Method,,
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5 |
Method,method,,
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6 | 6 |
Type,type,, |
7 | 7 |
XEast Long,verbatimCoordinates,"/_join/2/_label[label=""x""]/value", |
8 | 8 |
XPrecision,*XPrecision,, |
inputs/NVS/Coordinates/VegBIEN.csv | ||
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14 | 14 |
Map Projection,,** No join mapping for *Map Projection ** |
15 | 15 |
Map Series,,** No join mapping for *Map Series ** |
16 | 16 |
Map Sheet,,** No join mapping for *Map Sheet ** |
17 |
Method,,** No join mapping for *Method **
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17 |
Method,,** No join mapping for method **
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18 | 18 |
Plot Obs ID,,** No join mapping for *Plot Obs ID ** |
19 | 19 |
Type,,** No join mapping for type ** |
20 | 20 |
Units,,** No join mapping for *Units ** |
inputs/NVS/Coordinates/unmapped_terms.csv | ||
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1 | 1 |
*Plot Obs ID |
2 |
*Method
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2 |
method
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3 | 3 |
type |
4 | 4 |
*XPrecision |
5 | 5 |
*Units |
inputs/VegBank/stemcount_/new_terms.csv | ||
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2 | 2 |
cover,coverPercent,, |
3 | 3 |
stemcount_id,aggregateOccurrenceID,, |
4 | 4 |
stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
5 |
stemheight,height_m,,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
inputs/VegBank/observation_/new_terms.csv | ||
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1 | 1 |
observation_id,eventID,, |
2 | 2 |
methodnarrative,samplingProtocol,, |
3 |
soilorganic,organic_percent,,"""Percent organic content of the soil"" (soilOrganic definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
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4 |
soilsand,sand_percent,,"""Percent sand in the soil horizon"" (soilSand definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
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5 |
soilsilt,silt_percent,,"""Percent silt in the soil horizon"" (soilSilt definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
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6 |
soilclay,clay_percent,,"""Percent clay in the soil horizon"" (soilClay definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)" |
|
7 | 3 |
soilph,ph,, |
inputs/VegBank/stemlocation_/new_terms.csv | ||
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1 | 1 |
stemcount_id,aggregateOccurrenceID,, |
2 | 2 |
taxonimportance_id,OMIT,,Omitted because stemcount_id is more specific |
3 | 3 |
stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
4 |
stemheight,height_m,,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
|
5 | 4 |
stemlocation_id,stemID,, |
6 | 5 |
stemlocation_id,individualID,, |
7 | 6 |
stemxposition,organismX_m,,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
Also available in: Unified diff
mappings/VegCore.csv: Regenerated from wiki