GBIF,VegCore,Filter,Comments

:aggregator,referenceType,,

UBC,VegCore,Filter,Comments

:herbarium,referenceType,,

                                </place>

                            </place_id>

                        </locationplace>

                        <verbatimelevation>$verbatimElevation</verbatimelevation>

                    </location>

                </path>

dwc_dwcore_Sex,sex,,

dwc_curatorial_IdentifiedBy,identifiedBy,,

dwc_curatorial_CollectorNumber,recordNumber,/_alt/3,

-----"

dwc_curatorial_TypeStatus,typeStatus,,

dwc_curatorial_IndividualCount,individualCount,,

dwc_terms_year,year,,

dwc_terms_month,month,,

dwc_terms_day,day,,

-----"

dwc_terms_continent,continent,,

dwc_terms_country,country,,

conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,,

conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,

conceptual_darwin_2003_1_0_CollectorNumber,recordNumber,/_alt/3,

-----"

conceptual_darwin_2003_1_0_Collector,recordedBy,,

conceptual_darwin_2003_1_0_YearCollected,yearCollected,,

conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,

conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,

conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,

dwc_terms_minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,

dwc_dwcore_GlobalUniqueIdentifier,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",

dwc_terms_recordNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_alt/1",

-----"

-----"

-----"

conceptual_darwin_2003_1_0_CollectorNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_alt/3",

dwc_curatorial_CollectorNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_alt/3",

dwc_terms_individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,

conceptual_darwin_2003_1_0_Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,

dwc_terms_recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/1,

-----"

-----"

-----"

conceptual_darwin_2003_1_0_CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/3,

dwc_curatorial_CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/3,

dwc_terms_collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name

dwc_terms_collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,

dwc_terms_recordNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else/_alt/1",

-----"

-----"

-----"

conceptual_darwin_2003_1_0_CollectorNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else/_alt/3",

dwc_curatorial_CollectorNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else/_alt/3",

dwc_terms_institutionCode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_split:[separator=""[,;] *""]/value",

dwc_dwcore_GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,

dwc_terms_recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3/_alt/1",

-----"

-----"

-----"

conceptual_darwin_2003_1_0_CollectorNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3/_alt/3",

dwc_curatorial_CollectorNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3/_alt/3",

dwc_terms_recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname,

dwc_dwcore_GlobalUniqueIdentifier,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",

dwc_terms_recordNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_alt/1",

-----"

-----"

-----"

conceptual_darwin_2003_1_0_CollectorNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_alt/3",

dwc_curatorial_CollectorNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_alt/3",

dwc_dwcore_CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",

dwc_terms_catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",

dwc_terms_recordNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_alt/1",

-----"

-----"

-----"

conceptual_darwin_2003_1_0_CollectorNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_alt/3",

dwc_curatorial_CollectorNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_alt/3",

height_class,*height_class,,

height_m,height_m,,"""Total height of individual, in meters"" (height_m definition at <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>)"

height_m_commercial,*height_m_commercial,,

NoInd,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."

cover_percent,coverPercent,,

intercept_cm,intercept_cm,,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."

OrigGenus,originalGenus,,

OrigSpecies,originalSpecificEpithet,,Brad: OMIT

OrigAuth,*OrigAuth,,

canopy_position,canopyPosition,,

canopy_form,canopyForm,,

liana_infestation,lianaInfestation,,

tmp_PlotObsID,*tmp_PlotObsID,,

temp_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"

temp_liandbh,*temp_liandbh,,

*morphocf

*IsMorpho

*OrigAuth

*tmp_PlotObsID

*temp_liandbh

*tmp_del

life_zone_code,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/4,

date_finish,/location/locationevent/obsenddate/_alt/1,

date_start,/location/locationevent/obsstartdate/_alt/1,

soil_acidity,"/location/locationevent/soilsample/acidity_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values

soil_base,/location/locationevent/soilsample/basesaturation_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values

soil_Ca,/location/locationevent/soilsample/calcium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values

Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.

elev_max_m,maximumElevationInMeters,,

elev_min_m,minimumElevationInMeters,,

soil_N,nitrogen_percent,,Assuming units are % based on the range of values

soil_P,phosphorus_percent,"/_map:[""<1,5""=0,*=*]/value",Assuming units are % based on the range of values

soil_K,potassium_percent,,Assuming units are % based on the range of values

Alt2,*Alt2,,What is this?

Ecology,habitat,,

Phenology,reproductiveCondition,,

JBM,VegCore,Filter,Comments

:herbarium,referenceType,,

county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,

stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,

stateProvince,/location/locationplace/*_id/place/stateprovince,

verbatimElevation,/location/verbatimelevation,

associatedMedia,,** No join mapping for associatedMedia ** 

basisOfRecord,,** No join mapping for basisOfRecord ** 

informationWithheld,,** No join mapping for informationWithheld ** 

institutionID,,** No join mapping for institutionID ** 

language,,** No join mapping for language ** 

modified,,** No join mapping for modified ** 

municipality,,** No join mapping for municipality ** 

nomenclaturalCode,,** No join mapping for nomenclaturalCode ** 

SpeciesLink,VegCore,Filter,Comments

:aggregator,referenceType,,

dataSourceName,institutionCode,,

dataSourceNamePrimary,*dataSourceNamePrimary,,

plotID,locationID,,

bien2_taxonomyID,*bien2_taxonomyID,,

bien2_DBPlotID,*bien2_DBPlotID,,

bien2_ObservationID,*bien2_ObservationID,,

plotMethod,samplingProtocol,,

latitude,decimalLatitude,,

longitude,decimalLongitude,,

isNewWorld,isNewWorld,,

elevation_m,elevationInMeters,,

isCultivated,cultivated,,

abund2.5,*abund2.5,,

abund10,*abund10,,

pctCover,coverPercent,,

traitUnit,*traitUnit,,

traitMethod,*traitMethod,,

observationID_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation

PreviousCatalogNumber,otherCatalogNumbers,,

RelationshipType,relationshipOfResource,,

RelatedCatalogItem,relatedResourceID,,

Habitat,habitat,,

Substrate,locality,"/_join/2/_label[label=""substrate""]/value",

Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value",

UniqueNYInternalRecordNumber,OMIT,,"Globally unique when provided, but omitted to avoid confusion since this is an internal-only ID"

bien_web,VegCore,Filter,Comments

:aggregator,referenceType,,

NY,VegCore,Filter,Comments

:herbarium,referenceType,,

MT,VegCore,Filter,Comments

:herbarium,referenceType,,

XAL,VegCore,Filter,Comments

:herbarium,referenceType,,

darwin:PreviousCatalogNumber,otherCatalogNumbers,,

darwin:RelationshipType,relationshipOfResource,,

darwin:RelatedCatalogItem,relatedResourceID,,

darwin:PreviousCatalogNumber,otherCatalogNumbers,,

darwin:RelationshipType,relationshipOfResource,,

darwin:RelatedCatalogItem,relatedResourceID,,

NCU,VegCore,Filter,Comments

:herbarium,referenceType,,

BarCode,OMIT,,"Omitted because this isn't specified on all rows, but SpecimenPK is"

CatalogNumber,catalogNumber,,

CatalogSeriesPrefix,institutionCode,/_alt/1,

LandOwner,*LandOwner,,

BlockLocationReason,*BlockLocationReason,,

BlockSpecificLocation,*BlockSpecificLocation,,

CurrentScientificNameWithAuthor,scientificName,,

CollectionDate,dateCollected,,

CatalogSeriesPrefix,institutionCode,/_alt/1,

CityLocality,verbatimLocality,/_alt/2,

Latitude1,decimalLatitude,,

Longitude1,decimalLongitude,,

TraitName,measurementType,,

TraitValue,measurementValue,,

Unit,measurementUnit,,

Region,*Region,,

Country,country,,

StateProvince,stateProvince,,

VerbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",

TraitObservationID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",

LocalityDescription,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/2,

TraitObservationID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",

TraitObservationID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,

Taxon,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",

AuthorshipContact,,** No join mapping for *AuthorshipContact ** 

Family_index,,** No non-empty join mapping for OMIT ** 

LowerPolitical,,** No join mapping for *LowerPolitical ** 

Observation,,** No join mapping for *Observation ** 

Project_PI,,** No join mapping for *Project_PI ** 

Project_PI_contact,,** No join mapping for *Project_PI_contact ** 

                        </elevation_m>

                        <iscultivated><_locationnarrative_is_cultivated><locationnarrative>$LocalityDescription</locationnarrative></_locationnarrative_is_cultivated></iscultivated>

                        <locationevent>

                            <taxonoccurrence>

                                <aggregateoccurrence><plantobservation><specimenreplicate><sourceaccessioncode>$TraitObservationID</sourceaccessioncode></specimenreplicate></plantobservation></aggregateoccurrence>

                                <growthform>$Habit</growthform>

        </path>

    </_setDefault>

</VegBIEN>

*Region

*LowerPolitical

*Source

bien2_traits,VegCore,Filter,Comments

:primary database,referenceType,,

TEAM,VegCore,Filter,Comments

:primary database,referenceType,,

ACAD,VegCore,Filter,Comments

:herbarium,referenceType,,

county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,

stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,

stateProvince,/location/locationplace/*_id/place/stateprovince,

verbatimElevation,/location/verbatimelevation,

basisOfRecord,,** No join mapping for basisOfRecord ** 

bibliographicCitation,,** No join mapping for bibliographicCitation ** 

georeferenceVerificationStatus,,** No join mapping for georeferenceVerificationStatus ** 

identificationRemarks,,** No join mapping for identificationRemarks ** 

language,,** No join mapping for language ** 

modified,,** No join mapping for modified ** 

municipality,,** No join mapping for municipality ** 

occurrenceRemarks,,** No join mapping for occurrenceRemarks ** 

                                </place>

                            </place_id>

                        </locationplace>

                        <verbatimelevation>$verbatimElevation</verbatimelevation>

                    </location>

                </path>

georeferenceSources

language

georeferenceVerificationStatus

verbatimDepth

municipality

modified

WIN,VegCore,Filter,Comments

:herbarium,referenceType,,

CTFS,VegCore,Filter,Comments

CensusID,eventID,,

PlotID,locationID,,

StartDate,startDate,,

EndDate,endDate,,

Description,*Description,,

CTFS,VegCore,Filter,Comments

:primary database,referenceType,,

origrecord_id_stems,*origrecord_id_stems,,

PlotObsID,individualID,,

NoInd,stemCount,,

stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for plotObservations.intercept_cm, which measures the same dimension"

stem_notes,stemNotes,,

stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."

stem_tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."

stem_height_m,height_m,,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare."

stem_canopy_form,canopyForm,,

stem_canopy_position,canopyPosition,,

stem_liana_infestation,lianaInfestation,,

PlotObsID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",

PlotObsID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode/_first/2,

NoInd,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount,

stem_canopy_form,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",

stem_canopy_position,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",

stem_liana_infestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",

stem_notes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue",

stem_dbh,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"Assuming units based on the units for plotObservations.intercept_cm, which measures the same dimension"

                                        <sourceaccessioncode>$PlotObsID</sourceaccessioncode>

                                        <stemcount>$NoInd</stemcount>

                                        <stemobservation>

                                            <definedvalue fkey="tablerecord_id">

                                                <userdefined_id>

                                                    <userdefined>

                                                        <userdefinedname>gentryDiameter</userdefinedname>

                                                    </userdefined>

                                                </userdefined_id>

                                            </definedvalue>

                                            <definedvalue fkey="tablerecord_id">

                                                <userdefined_id>

NoInd,stemCount,,

stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."

stem_height_m,height_m,,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare."

plotobs_id_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation

SALVIAS,VegCore,Filter,Comments

:aggregator,referenceType,,

name_status,,"** No non-empty join mapping for OMIT ** Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."

other_annotations,,** No join mapping for *other_annotations ** 

perp_dist,,** No join mapping for *perp_dist ** 

species_code,,** No join mapping for *species_code ** 

temp_liandbh,,** No join mapping for *temp_liandbh ** 

tmp_PlotObsID,,** No join mapping for *tmp_PlotObsID ** 

Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.

elev_max_m,maximumElevationInMeters,,

elev_min_m,minimumElevationInMeters,,

ElevSource,*ElevSource,,

PrecipSource,*PrecipSource,,

TempSource,*TempSource,,

bearing,*bearing,,

date_start,startDate,,

date_finish,endDate,,

plot_administrator,*plot_administrator,,

tmp_del,*tmp_del,,"3 plots contain ""del"" in this field and 3 in AccessCode"

Country_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation

PrimOwnerID_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation

                            </commclass>

                            <obsenddate>$date_finish</obsenddate>

                            <obsstartdate>$date_start</obsstartdate>

                            <soilsample>

                                <acidity_fraction>

                                    <_percent_to_fraction>

U,VegCore,Filter,Comments

:herbarium,referenceType,,

QFA,VegCore,Filter,Comments

:herbarium,referenceType,,

HIBG,VegCore,Filter,Comments

:herbarium,referenceType,,

references

institutionID

verbatimCoordinateSystem

reproductiveCondition

dynamicProperties

basisOfRecord

dwc_dwcore_Sex,sex,,

dwc_curatorial_IdentifiedBy,identifiedBy,,

dwc_curatorial_CollectorNumber,recordNumber,/_alt/3,

-----"

dwc_curatorial_TypeStatus,typeStatus,,

dwc_curatorial_IndividualCount,individualCount,,

dwc_terms_year,year,,

dwc_terms_month,month,,

dwc_terms_day,day,,

-----"

dwc_terms_continent,continent,,

dwc_terms_country,country,,

conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,,

conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,

conceptual_darwin_2003_1_0_CollectorNumber,recordNumber,/_alt/3,

-----"

conceptual_darwin_2003_1_0_Collector,recordedBy,,

conceptual_darwin_2003_1_0_YearCollected,yearCollected,,

conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,

conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,

conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,

analytical_db,VegCore,Filter,Comments

:aggregator,referenceType,,

*stateProvinceError

*localityDescription

*plotMinDbh

isNewWorld

cultivatedBasis

*abund

*abund1

*abund2.5

*abund10

*traitUnit

*traitMethod

key,OMIT,,UniqueNYInternalRecordNumber is a better pkey

CoordinatePrecision,coordinateUncertaintyInMeters,,"Usage inconsistent with DwC definition, which only allows degrees. Assuming units based on the range and precision of values."

Substrate,locality,"/_join/2/_label[label=""substrate""]/value",

Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value",

UniqueNYInternalRecordNumber,OMIT,,"Globally unique when provided, but omitted to avoid confusion since this is an internal-only ID"

Sequence,subplot,,

Tree,individualCode,,

Trunk,authorStemCode,,

SpecimenID,catalogNumber,,

Diameter,diameterBreastHeight_cm,,

TotalHeight,height_m,,

HabitName,growthForm,,

Sequence,subplot,,

SubplotX,subplotX,,

SubplotY,subplotY,,

Tree,individualCode,,

Trunk,authorStemCode,,

Tag,tag,,

SubplotX2,*SubplotX2,,

SubplotY2,*SubplotY2,,

HabitName,growthForm,,

DNASample,*DNASample,,

IsAlive,*IsAlive,,

CompoundLeaf,UNUSED,,

Madidi,VegCore,Filter,Comments

:primary database,referenceType,,

LatitudeDecDeg,decimalLatitude,,

LongitudeDecDeg,decimalLongitude,,

Total Nitrogen,nitrogen_percent,,Assuming units are % based on the range of values

Interchangeable Acidity,acidity_percent,,Assuming units are % based on the range of values

CIC,cationExchangeCapacity_cmol_kg,,

Textural Class,texture,,

Madidi,VegCore,Filter,Comments

PlotID,locationID,/_first/2,

PlotName,locationID,/_first/1,

LatitudeDecDeg,decimalLatitude,,

LongitudeDecDeg,decimalLongitude,,

Total Nitrogen,nitrogen_percent,,Assuming units are % based on the range of values

Funding agency,*Funding agency,,

Collaborators,*Collaborators,,

Installed and evaluated by,*Installed and evaluated by,,

Interchangeable Magnesium,magnesium_percent,,Assuming units are % based on the range of values

Interchangeable Acidity,acidity_percent,,Assuming units are % based on the range of values

CIC,cationExchangeCapacity_cmol_kg,,

Silt,silt_percent,,Assuming units are % based on the range of values

Clay,clay_percent,,Assuming units are % based on the range of values

Textural Class,texture,,

Textural Class (select),*Textural Class (select),,

Qualifier Available Phosphor,*Qualifier Available Phosphor,,

Qualifier Interchangeable Calcium,*Qualifier Interchangeable Calcium,,

FirstSurveyDate,*FirstSurveyDate,,

Topography,landform,,

LocalityDescription,locality,,

UNCC,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments

-----"

herbarium,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",

-----"

-----"

herbarium,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then",

-----"

collectno,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",

cultivated,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_alt/2",Ignore other values

loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/6/_label[label=""loaned to""]/value",

inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/7/_label[label=""in or out""]/value",

collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,

-----"

collectno,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",

-----"

herbarium,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name",

herbarium,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_split:[separator=""[,;] *""]/value",

SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,

usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/1,

infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/2,

-----"

collectno,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",

locality,/location/locationnarrative/_merge/1,

det_type,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."

coll_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else/_alt/1",Brad: Map instead as for voucher_string

voucher_string,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."

stem_canopy_form,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue",

stem_canopy_position,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue",

stem_liana_infestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue",

elev_m,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.

elev_max_m,maximumElevationInMeters,,

elev_min_m,minimumElevationInMeters,,

slope_aspect,slopeAspect,,

slope_gradient,slopeGradient,,

clay_percent,clay_percent,,

taxonImportance_ID,OMIT,,Omitted because STEMCOUNT_ID is more specific

cover,coverPercent,,

stemDiameter,diameterBreastHeight_cm,,

taxonImportance_ID,OMIT,,Omitted because STEMCOUNT_ID is more specific

stemDiameter,diameterBreastHeight_cm,,

STEMLOCATION_ID,stemID,,

*taxonInterpretation_PLANTNAME_ID

*taxonInterpretation_PARTY_ID

*ROLE_ID

*reference_ID

*originalInterpretation

*currentInterpretation

MeasDay,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",

MeasMon,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",

MeasYear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",

DBH,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_in_to_m/value,Assuming units based on the range and precision of values and location inside the U.S.

Height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m/_ft_to_m/value,"Assuming units based on the range of values, the height of the tallest tree [1], and location inside the U.S.

NVS,VegCore,Filter,Comments

:primary database,referenceType,,