Revision 7469
Added by Aaron Marcuse-Kubitza about 12 years ago
| VegCore-VegBIEN.csv | ||
|---|---|---|
| 2 | 2 |
catalogNumber,"/_if[@name=""if specimen""]/cond/_exists", |
| 3 | 3 |
occurrenceID,"/_if[@name=""if specimen""]/cond/_exists", |
| 4 | 4 |
institutionCode,"/_if[@name=""if specimen""]/else/source/shortname/_first/1", |
| 5 |
observationType,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/observationtype",
|
|
| 5 |
observationGranularity,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/observationtype",
|
|
| 6 | 6 |
referenceType,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/sourcetype", |
| 7 | 7 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
| 8 | 8 |
subplotID,"/location/_if[@name=""if subplot""]/cond/_exists", |
| 9 | 9 |
locationName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
| 10 | 10 |
locationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| 11 |
fieldNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
| 12 |
observationType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/cond/_eq:[right=plot]/left",
|
|
| 11 |
authorEventCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else",
|
|
| 12 |
observationGranularity,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/cond/_eq:[right=plot]/left",
|
|
| 13 | 13 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1", |
| 14 | 14 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists", |
| 15 | 15 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
| ... | ... | |
| 54 | 54 |
projectEndDate,/location/locationevent/*_id/project/stopdate, |
| 55 | 55 |
subplot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists", |
| 56 | 56 |
subplotID,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists", |
| 57 |
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
|
|
| 57 |
authorEventCode,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode",
|
|
| 58 | 58 |
eventID,"/location/locationevent/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| 59 |
authorEventCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
|
| 59 | 60 |
endDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 60 | 61 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 61 | 62 |
eventID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 62 |
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
|
| 63 | 63 |
startDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists", |
| 64 | 64 |
subplotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/cond/_first/1", |
| 65 | 65 |
subplot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/cond/_first/2", |
| ... | ... | |
| 67 | 67 |
subplotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/1", |
| 68 | 68 |
subplot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
| 69 | 69 |
locationID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 70 |
fieldNumber,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authoreventcode",
|
|
| 70 |
authorEventCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authoreventcode",
|
|
| 71 | 71 |
endDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1", |
| 72 | 72 |
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value", |
| 73 | 73 |
startDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1", |
| ... | ... | |
| 79 | 79 |
eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value, |
| 80 | 80 |
startDate,/location/locationevent/obsstartdate/_alt/1, |
| 81 | 81 |
eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value, |
| 82 |
precipitation,/location/locationevent/precipitation_m, |
|
| 82 |
precipitation_m,/location/locationevent/precipitation_m,
|
|
| 83 | 83 |
precipitation_mm,/location/locationevent/precipitation_m/_mm_to_m/value, |
| 84 | 84 |
acidity_percent,/location/locationevent/soilsample/acidity_fraction/_percent_to_fraction/value, |
| 85 | 85 |
baseSaturation_percent,/location/locationevent/soilsample/basesaturation_fraction/_percent_to_fraction/value, |
| ... | ... | |
| 160 | 160 |
censusNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue", |
| 161 | 161 |
intercept_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m, |
| 162 | 162 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m/_cm_to_m/value, |
| 163 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
|
|
| 163 |
organismNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
|
|
| 164 | 164 |
individualCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1, |
| 165 | 165 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
| 166 | 166 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
| ... | ... | |
| 179 | 179 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 180 | 180 |
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount, |
| 181 | 181 |
authorStemCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode, |
| 182 |
basalDiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter_m, |
|
| 182 |
basalDiameter_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter_m,
|
|
| 183 | 183 |
basalDiameter_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter_m/_cm_to_m/value, |
| 184 | 184 |
basalDiameter_in,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/basaldiameter_m/_in_to_m/value, |
| 185 | 185 |
canopyForm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyForm]]:[@fkey=tablerecord_id]/definedvalue", |
| 186 | 186 |
canopyPosition,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=canopyPosition]]:[@fkey=tablerecord_id]/definedvalue", |
| 187 |
diameterBreastHeightGentry,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue", |
|
| 187 |
diameterBreastHeightGentry_m,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue",
|
|
| 188 | 188 |
diameterBreastHeightGentry_cm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=gentryDiameter]]:[@fkey=tablerecord_id]/definedvalue/_cm_to_m/value", |
| 189 | 189 |
lianaInfestation,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=lianaInfestation]]:[@fkey=tablerecord_id]/definedvalue", |
| 190 | 190 |
stemNotes,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=notes]]:[@fkey=tablerecord_id]/definedvalue", |
| ... | ... | |
| 193 | 193 |
diameterBreastHeight_in,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_in_to_m/value, |
| 194 | 194 |
height_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m, |
| 195 | 195 |
height_ft,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m/_ft_to_m/value, |
| 196 |
heightFirstBranch,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch_m, |
|
| 196 |
heightFirstBranch_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/heightfirstbranch_m,
|
|
| 197 | 197 |
stemID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode, |
| 198 | 198 |
tag,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
| 199 | 199 |
organismX_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m, |
| 200 | 200 |
organismY_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m, |
| 201 |
aggregateOccurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode, |
|
| 201 |
aggregateOrganismObservationID,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode, |
|
| 202 |
authorEventCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
| 202 | 203 |
eventID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 203 |
fieldNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
|
| 204 | 204 |
locationID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 205 | 205 |
locationName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 206 | 206 |
individualID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/cond/_exists", |
| ... | ... | |
| 227 | 227 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value", |
| 228 | 228 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 229 | 229 |
taxonOccurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1, |
| 230 |
aggregateOccurrenceID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists",
|
|
| 230 |
aggregateOrganismObservationID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists",
|
|
| 231 | 231 |
individualObservationID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else/_first/1", |
| 232 | 232 |
individualID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else/_first/2", |
| 233 | 233 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| ... | ... | |
| 256 | 256 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 257 | 257 |
taxonConceptID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 258 | 258 |
taxonID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 259 |
accordingTo,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonconcept/concept_reference_id/source/shortname,
|
|
| 259 |
nameAccordingTo,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonconcept/concept_reference_id/source/shortname,
|
|
| 260 | 260 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 261 | 261 |
taxonNameOrEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/then", |
| 262 | 262 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
| ... | ... | |
| 313 | 313 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 314 | 314 |
voucherType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
| 315 | 315 |
recordNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then", |
| 316 |
temperature,/location/locationevent/temperature_c, |
|
| 316 |
temperature_C,/location/locationevent/temperature_c,
|
|
| 317 | 317 |
maximumDepthInMeters,/location/locationevent/waterdepth_m/_avg/max, |
| 318 | 318 |
minimumDepthInMeters,/location/locationevent/waterdepth_m/_avg/min, |
| 319 | 319 |
locality,/location/locationnarrative/_merge/1, |
| ... | ... | |
| 348 | 348 |
latLongInCounty,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/geovalid/_first/2/_and/3, |
| 349 | 349 |
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2, |
| 350 | 350 |
stateProvince,/location/locationplace/*_id/place/stateprovince, |
| 351 |
plotNotes,/location/notespublic,
|
|
| 351 |
locationRemarks,/location/notespublic,
|
|
| 352 | 352 |
parentPlotName,/location/parent_id/location/authorlocationcode, |
| 353 | 353 |
parentLocationID,/location/parent_id/location/sourceaccessioncode, |
| 354 | 354 |
slopeAspect,/location/slopeaspect_deg/_alt/1/_compass/value, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv, inputs/*/*/map.csv: Applied term renamings from the new dynamically generated Veg+-VegCore.csv, which reflects the current state of the data dictionary. (Permanently switching to the new Veg+-VegCore.csv will be a separate change.) Updates to VegCore term names that have occurred since the data dictionary was created are now able to take effect, which involves remapping and inferring units on several fields.