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Revision 7473

mappings/Makefile: VegCore.csv: Removed synonyms, since the canonicalization of them is handled by Veg+-VegCore.csv

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mappings/VegCore.csv
3 3
PRIVATE
4 4
UNUSED
5 5
datasource
6
datasourceName
7 6
type
8
dcterms_type
9 7
referenceType
10
aggregatorOrPrimary
11 8
isHerbarium
12 9
modified
13
dcterms_modified
14
dateLastModified
15 10
language
16
dcterms_language
17 11
rights
18
dcterms_rights
19 12
rightsHolder
20
dcterms_rightsHolder
21 13
accessRights
22
dcterms_accessRights
23 14
bibliographicCitation
24
dcterms_bibliographicCitation
25 15
references
26
dcterms_references
27 16
institutionID
28 17
collectionID
29 18
datasetID
30 19
institutionCode
31 20
collectionCode
32 21
datasetName
33
dataset
34 22
ownerInstitutionCode
35 23
basisOfRecord
36 24
informationWithheld
......
38 26
dynamicProperties
39 27
samplingProtocolID
40 28
samplingProtocol
41
method
42
methodology
43
plotMethodology
44 29
samplingEffort
45 30
observationGranularity
46
observationType_BIEN2
47 31
observationMeasure
48
observationType_SALVIAS
49 32
?observationType
50 33
observationType_SALVIAS
51 34
observationType_BIEN2
52 35
projectID
53 36
projectName
54
projectTitle
55 37
projectStartDate
56 38
projectEndDate
57 39
eventID
58
censusID
59 40
eventDate
60 41
startDate
61
obsStartDate
62 42
endDate
63
obsEndDate
64 43
eventTime
65
timeOfDay
66 44
startDayOfYear
67
julianDay
68 45
endDayOfYear
69 46
year
70 47
month
......
72 49
verbatimEventDate
73 50
habitat
74 51
authorEventCode
75
authorObsCode
76
plotCensusNumber
77
fieldNumber_DwC_terms
78 52
eventRemarks
79
fieldNotes_DwC_terms
80 53
decimalLatitude
81
latitude
82 54
acceptedDecimalLatitude
83 55
decimalLongitude
84
longitude
85 56
acceptedDecimalLongitude
86 57
coordinateSource
87
coordinateSource_bien
88 58
?realLatitude
89 59
PRIVATE
90 60
?realLongitude
......
101 71
coordinatePrecision_deg
102 72
pointRadiusSpatialFit
103 73
footprintWKT
104
boundingBox
105
shapeOfSite
106 74
footprintSRS
107 75
footprintSpatialFit
108 76
higherGeographyID
109 77
higherGeography
110 78
continent
111
continentOcean
112 79
waterBody
113 80
islandGroup
114 81
island
115 82
country
116
countryName
117 83
acceptedCountry
118 84
countryCode
119 85
stateProvince
120
state
121 86
acceptedStateProvince
122 87
county
123 88
acceptedCounty
124 89
municipality
125 90
locality
126
locationNarrative
127
descriptionOfSite
128 91
verbatimLocality
129 92
geovalid
130
isGeovalid
131 93
latLongDomainValid
132
isValidLatLong
133 94
latLongDomainInvalid
134
isBadLatLong
135 95
latLongInCountry
136
isInCountry
137 96
?distanceToCountry
138
?distErrCountry
139 97
distanceToCountry_m
140 98
distanceToCountry_km
141 99
latLongInStateProvince
142
isInStateProvince
143 100
?distanceToStateProvince
144
?distErrStateProvince
145 101
distanceToStateProvince_m
146 102
distanceToStateProvince_km
147 103
latLongInCounty
148
isInCountyParish
149 104
isNewWorld
150
isNewWorld_bien
151 105
georeferencedBy
152 106
georeferencedDate
153 107
georeferenceProtocol
154
georeferenceProtocol_bien
155 108
georeferenceSources
156 109
georeferenceVerificationStatus
157 110
georeferenceRemarks
158 111
locationID
159
plotID
160
plotUniqueIdentifierID
161 112
locationName
162
plotName
163
authorPlotCode
164
locationNumber
165 113
parentLocationID
166 114
parentPlotName
167 115
locationAccordingTo
168 116
locationRemarks
169
plotNotes
170
plotNote
171
notes_Madidi
172 117
?elevation
173 118
elevationInMeters
174 119
verbatimElevation
......
191 136
minimumDistanceAboveSurfaceInMeters
192 137
maximumDistanceAboveSurfaceInMeters
193 138
?plotArea
194
?area
195 139
plotArea_m2
196 140
plotArea_ha
197 141
slopeAspect
......
203 147
landform
204 148
?temperature
205 149
temperature_C
206
temp_C
207 150
temperature_F
208 151
?precipitation
209 152
precipitation_m
210 153
precipitation_mm
211
precip_mm
212 154
?phosphorus
213 155
phosphorus_fraction
214 156
phosphorus_percent
215 157
?potassium
216
pottasium
217 158
potassium_fraction
218 159
potassium_percent
219 160
?magnesium
......
223 164
nitrogen_fraction
224 165
nitrogen_percent
225 166
?carbon
226
?soilC
227 167
carbon_fraction
228 168
carbon_percent
229 169
?calcium
230
?soilCa
231 170
calcium_fraction
232 171
calcium_percent
233 172
?sodium
234
?soilNa
235 173
sodium_fraction
236 174
sodium_percent
237 175
?acidity
238
?soilAcidity
239 176
acidity_fraction
240 177
acidity_percent
241 178
?organic
242
?soilOrganic
243 179
organic_fraction
244 180
organic_percent
245 181
texture
246
soilTexture
247 182
?sand
248
?soilSand
249 183
sand_fraction
250 184
sand_percent
251 185
?silt
252
?soilSilt
253 186
silt_fraction
254 187
silt_percent
255 188
?clay
256
?soilClay
257 189
clay_fraction
258 190
clay_percent
259 191
ph
260 192
?cationExchangeCapacity
261
?exchangeCapacity
262
?soilCationCap
263 193
cationExchangeCapacity_cmol_kg
264 194
cationExchangeCapacity_meq_100g
265 195
?baseSaturation
266 196
baseSaturation_fraction
267 197
baseSaturation_percent
268 198
conductivity
269
soilConductivity
270 199
subplotID
271
quadratID
272 200
subplot
273
quadratName
274 201
subplotX
275
plotRelativeX
276
startX
277 202
subplotY
278
plotRelativeY
279
startY
280 203
geologicalContextID
281 204
earliestEonOrLowestEonothem
282 205
latestEonOrHighestEonothem
......
297 220
bed
298 221
communityID
299 222
communityName
300
communityConceptName
301 223
occurrenceID
302
globalUniqueIdentifier_DwC
303 224
?globalUniqueIdentifier
304 225
globalUniqueIdentifier_DwC
305 226
globalUniqueIdentifier_SpeciesLink
306 227
datasetRecordID
307 228
datasourceRecordID
308
ID
309
globalUniqueIdentifier_SpeciesLink
310 229
occurrenceRemarks
311 230
recordNumber
312
collectorNumber
313
fieldNumber_DwC_curatorial
314 231
?fieldNumber
315 232
fieldNumber_DwC_curatorial
316 233
fieldNumber_DwC_terms
317 234
recordedBy
318
collector
319 235
recordedBy_givenName
320 236
recordedBy_middleName
321 237
recordedBy_surName
......
347 263
taxonNameWithMorphospecies
348 264
morphoname
349 265
speciesBinomial
350
species_VegBank
351 266
acceptedNameUsage
352 267
parentNameUsage
353 268
originalNameUsage
......
355 270
namePublishedInYear
356 271
higherClassification
357 272
higherPlantGroup
358
higherPlantGroup_bien
359 273
kingdom
360 274
acceptedKingdom
361 275
originalKingdom
......
376 290
originalGenus
377 291
subgenus
378 292
specificEpithet
379
species_DwC
380
speciesName
381 293
?species
382 294
species_DwC
383 295
species_VegBank
......
388 300
acceptedInfraspecificEpithet
389 301
originalInfraspecificEpithet
390 302
forma
391
fm
392 303
acceptedForma
393 304
originalForma
394 305
variety
395
var
396 306
acceptedVariety
397 307
originalVariety
398 308
cultivar
399
cv
400 309
acceptedCultivar
401 310
originalCultivar
402 311
subspecies
403
ssp
404
subspeciesName
405 312
acceptedSubspecies
406 313
originalSubspecies
407 314
taxonRank
......
409 316
originalTaxonRank
410 317
verbatimTaxonRank
411 318
scientificNameAuthorship
412
scientificNameAuthor
413 319
acceptedScientificNameAuthorship
414 320
originalScientificNameAuthorship
415 321
vernacularName
416 322
nomenclaturalCode
417 323
taxonomicStatus
418 324
taxonIsCanonical
419
taxonIsAccepted
420 325
nomenclaturalStatus
421 326
taxonRemarks
422 327
threatened
423 328
taxonConceptID
424 329
parentTaxonConceptID
425 330
nameAccordingTo
426
accordingTo
427 331
nameAccordingToID
428 332
authorTaxonCode
429
authorPlantName
430 333
taxonOccurrencePkey
431 334
taxonOccurrenceID
432
taxonNameUsageConceptID
433 335
dateCollected
434
collectedDate
435 336
yearCollected
436 337
monthCollected
437 338
dayCollected
438 339
growthForm
439
habit
440 340
oldGrowth
441 341
identificationID
442 342
identificationType
443
interpretationType
444 343
identifiedBy
445 344
dateIdentified
446
identifiedDate
447 345
yearIdentified
448 346
monthIdentified
449 347
dayIdentified
......
451 349
identificationVerificationStatus
452 350
identificationRemarks
453 351
identificationQualifier
454
taxonFit
455 352
acceptedIdentificationQualifier
456 353
originalIdentificationQualifier
457 354
matchedTaxonFit_fraction
458
overallScore
459 355
matchedFamilyFit_fraction
460
familyScore
461 356
matchedGenusFit_fraction
462
genusScore
463 357
matchedSpeciesFit_fraction
464
specificEpithetScore
465 358
typeStatus
466 359
taxonObservationID
467
speciesInvID
468 360
aggregateOrganismObservationID
469
aggregateOccurrenceID
470 361
individualCount
471 362
coverPercent
472 363
?intercept
473 364
intercept_m
474 365
intercept_cm
475 366
individualCount_1cm_or_more
476
abund1cm
477 367
individualCount_2_5cm_or_more
478
abund2_5cm
479 368
individualCount_10cm_or_more
480
abund10cm
481 369
individualID
482 370
tag
483
identificationLabel
484
tag2
485 371
individualObservationID
486
individualOrganismObservationID
487 372
individualCode
488
authorPlantCode
489 373
organismX_m
490
individualOrganismObservationRelativeX
491 374
organismY_m
492
individualOrganismObservationRelativeY
493 375
censusNumber
494
censusNo
495 376
stemCount
496 377
sex
497 378
lifeStage
498 379
reproductiveCondition
499
phenology
500 380
behavior
501 381
establishmentMeans
502 382
cultivated
503
cultivated_bien
504 383
cultivatedBasis
505
cultivatedBasis_bien
506 384
canopyForm
507
stemCanopyForm
508 385
canopyPosition
509
stemCanopyPosition
510 386
lianaInfestation
511
stemLianaInfestation
512 387
organismNotes
513
fieldNotes_DwC_curatorial
514
remarks
515
notes_SALVIAS
516 388
?fieldNotes
517 389
fieldNotes_DwC_curatorial
518 390
fieldNotes_DwC_terms
......
521 393
notes_Madidi
522 394
stemID
523 395
stemTag
524
stemTag2
525 396
authorStemCode
526
stemCode
527 397
?height
528
?stemHeight
529 398
height_m
530 399
height_ft
531 400
?heightFirstBranch
532 401
heightFirstBranch_m
533
htFirstBranch_m
534 402
heightFirstBranch_ft
535 403
?diameterBreastHeight
536
?stemDbh
537
?DBH
538 404
diameterBreastHeight_m
539 405
diameterBreastHeight_cm
540 406
diameterBreastHeight_in
541 407
?diameterBreastHeightGentry
542
?gentryDbh
543 408
diameterBreastHeightGentry_m
544 409
diameterBreastHeightGentry_cm
545 410
diameterBreastHeightGentry_in
546 411
?basalDiameter
547
?basalDiam
548 412
basalDiameter_m
549 413
basalDiameter_cm
550 414
basalDiameter_in
551 415
stemNotes
552 416
barcode
553 417
catalogNumber
554
museumAccessionNumber
555
accessionNumber
556
accession
557 418
preparations
558
preparationType
559
preparation
560 419
disposition
561 420
otherCatalogNumbers
562
previousCatalogNumber
563 421
voucherType
564
detType
565 422
measurementID
566 423
measurementType
567
traitName
568 424
measurementValue
569
traitValue
570 425
measurementAccuracy
571 426
measurementUnit
572
unit
573 427
measurementDeterminedDate
574 428
measurementDeterminedBy
575 429
measurementMethod
......
577 431
resourceRelationshipID
578 432
resourceID
579 433
relatedResourceID
580
relatedCatalogItem
581 434
relationshipOfResource
582
relationshipType
583 435
relationshipAccordingTo
584 436
relationshipEstablishedDate
585 437
relationshipRemarks
mappings/Makefile
28 28
	php -r 'fpassthru(fopen("https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore", "r"));' >$@
29 29

  
30 30
VegCore.csv: VegCore.htm
31
	(echo VegCore; $(sed) -n 's/^.*<h[2-4][^>]*><a href="#[^>]+>(\??([a-z]|[A-Z]{2})[^<]*).*$$/\1/p')\
31
	(echo VegCore; $(sed) -n 's/^.*<h[24][^>]*><a href="#[^>]+>(\??([a-z]|[A-Z]{2})[^<]*).*$$/\1/p')\
32 32
<$< >$@
33 33

  
34 34
Veg+-VegCore.csv: VegCore.htm

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