Revision 7477
Added by Aaron Marcuse-Kubitza almost 12 years ago
inputs/.TNRS/public.unscrubbed_taxondetermination_view/map.csv | ||
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24 | 24 |
Infraspecific_rank_2,UNUSED,, |
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Infraspecific_epithet_2_matched,UNUSED,, |
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Infraspecific_epithet_2_score,UNUSED,, |
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Annotations,*Annotations,,
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Annotations,identificationQualifier,,
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28 | 28 |
Unmatched_terms,morphospecies,, |
29 | 29 |
Taxonomic_status,taxonomicStatus,, |
30 | 30 |
Accepted_name,acceptedTaxonName,/_first/1, |
inputs/.TNRS/public.unscrubbed_taxondetermination_view/VegBIEN.csv | ||
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75 | 75 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonconfidence/_max/3", |
76 | 76 |
Max_score,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonconfidence/_max/4/_first/1", |
77 | 77 |
Overall_score,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonconfidence/_max/4/_first/2",Assuming is a fraction based on the range of values |
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Annotations,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit", |
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Name_matched,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3", |
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:0,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",Enables the taxonoccurrence CHECK constraint to pass |
80 | 81 |
:0,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1,Enables the taxonoccurrence CHECK constraint to pass |
... | ... | |
118 | 119 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonconfidence/_max/4/_first/2",Assuming is a fraction based on the range of values |
119 | 120 |
:_,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value/_now, |
120 | 121 |
:matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationtype, |
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Annotations,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
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taxonoccurrence_id,/location/locationevent/taxonoccurrence/taxonoccurrence_id, |
122 | 124 |
Accepted_name.Accepted_name_lsid,,** No join mapping for *Accepted_name.Accepted_name_lsid/_first/3 ** |
123 | 125 |
Accepted_name.Accepted_name_species,,** No join mapping for *Accepted_name.Accepted_name_species/_first/3 ** |
... | ... | |
145 | 147 |
Accepted_name_lsid,,** No join mapping for *Accepted_name_lsid/_first/2 ** |
146 | 148 |
Accepted_name_species,,** No join mapping for *Accepted_name_species/_first/1 ** Also contains genus. Omitted because Accepted_name contains more info. |
147 | 149 |
Accepted_name_url,,** No join mapping for *Accepted_name_url/_first/1 ** |
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Annotations,,** No join mapping for *Annotations ** |
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Author_score,,** No join mapping for *Author_score ** |
150 | 151 |
Infraspecific_epithet_2_matched,,** No non-empty join mapping for UNUSED ** |
151 | 152 |
Infraspecific_epithet_2_score,,** No non-empty join mapping for UNUSED ** |
inputs/.TNRS/public.unscrubbed_taxondetermination_view/test.xml.ref | ||
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157 | 157 |
<4>$Max_score</4> |
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</_max> |
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</taxonconfidence> |
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<taxonfit>$Annotations</taxonfit> |
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</taxondetermination> |
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<sourceaccessioncode>0</sourceaccessioncode> |
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<taxondetermination> |
... | ... | |
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</taxonconfidence> |
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<determinationdate><_dateRangeStart><value><_now>_</_now></value></_dateRangeStart></determinationdate> |
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<determinationtype>matched</determinationtype> |
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<taxonfit>$Annotations</taxonfit> |
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</taxondetermination> |
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<taxonoccurrence_id>$taxonoccurrence_id</taxonoccurrence_id> |
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</taxonoccurrence> |
inputs/.TNRS/public.unscrubbed_taxondetermination_view/unmapped_terms.csv | ||
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2 | 2 |
*Name_score |
3 | 3 |
*Author_score |
4 | 4 |
*Infraspecific_epithet_score |
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*Annotations |
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6 | 5 |
*Accepted_name_url |
7 | 6 |
*Accepted_name_species |
8 | 7 |
*Selected |
mappings/VegCore.htm | ||
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6 | 6 |
<meta name="description" content="Redmine" /> |
7 | 7 |
<meta name="keywords" content="issue,bug,tracker" /> |
8 | 8 |
<meta content="authenticity_token" name="csrf-param" /> |
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<meta content="2ndj/RHqeXAXO5vQjWKw5dYyzz9+CbZ0SBo1+y5YfJo=" name="csrf-token" />
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<meta content="apfCDXVDxTLC49zvPELI8i4ozqGJEnNZwfPcn5G40GM=" name="csrf-token" />
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<link rel='shortcut icon' href='/nceas/favicon.ico?1347421715' /> |
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<link href="/nceas/stylesheets/jquery/jquery-ui-1.8.21.css?1357775071" media="all" rel="stylesheet" type="text/css" /> |
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<link href="/nceas/stylesheets/application.css?1357775071" media="all" rel="stylesheet" type="text/css" /> |
... | ... | |
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</li><li><a href="#TaxonDetermination">TaxonDetermination</a><ul><li><ul><li><a href="#Identification">Identification</a></li><li><a href="#TaxonInterpretation">TaxonInterpretation</a></li></ul> |
334 | 334 |
</li><li><a href="#identificationID">identificationID</a></li><li><a href="#identificationType">identificationType</a><ul><li><a href="#interpretationType">interpretationType</a></li></ul> |
335 | 335 |
</li><li><a href="#identifiedBy">identifiedBy</a></li><li><a href="#dateIdentified">dateIdentified</a><ul><li><a href="#identifiedDate">identifiedDate</a></li></ul> |
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</li><li><a href="#yearIdentified">yearIdentified</a></li><li><a href="#monthIdentified">monthIdentified</a></li><li><a href="#dayIdentified">dayIdentified</a></li><li><a href="#identificationReferences">identificationReferences</a></li><li><a href="#identificationVerificationStatus">identificationVerificationStatus</a></li><li><a href="#identificationRemarks">identificationRemarks</a></li><li><a href="#identificationQualifier">identificationQualifier</a><ul><li><a href="#taxonFit">taxonFit</a></li></ul> |
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</li><li><a href="#yearIdentified">yearIdentified</a></li><li><a href="#monthIdentified">monthIdentified</a></li><li><a href="#dayIdentified">dayIdentified</a></li><li><a href="#identificationReferences">identificationReferences</a></li><li><a href="#identificationVerificationStatus">identificationVerificationStatus</a></li><li><a href="#identificationRemarks">identificationRemarks</a></li><li><a href="#identificationQualifier">identificationQualifier</a><ul><li><a href="#taxonFit">taxonFit</a></li><li><a href="#annotations">annotations</a></li></ul>
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337 | 337 |
</li><li><a href="#acceptedIdentificationQualifier">acceptedIdentificationQualifier</a></li><li><a href="#originalIdentificationQualifier">originalIdentificationQualifier</a></li><li><a href="#matchedTaxonFit_fraction">matchedTaxonFit_fraction</a><ul><li><a href="#overallScore">overallScore</a></li></ul> |
338 | 338 |
</li><li><a href="#matchedFamilyFit_fraction">matchedFamilyFit_fraction</a><ul><li><a href="#familyScore">familyScore</a></li></ul> |
339 | 339 |
</li><li><a href="#matchedGenusFit_fraction">matchedGenusFit_fraction</a><ul><li><a href="#genusScore">genusScore</a></li></ul> |
... | ... | |
4437 | 4437 |
<p style="padding-left:10em;">From: <a href="http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=taxoninterpretation&entity=dba_tabledescription&where=where_tablename#taxonFit" class="external">VegBank</a></p> |
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<a name="annotations"></a> |
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<h3 style="padding-left:7em;"><a href="#annotations" class="wiki-page">annotations</a><a href="#annotations" class="wiki-anchor">¶</a></h3> |
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<p style="padding-left:10em;">From: <a href="http://tnrs.iplantcollaborative.org/instructions.html#detailed_download/Annotations" class="external">TNRS</a></p> |
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<a name="acceptedIdentificationQualifier"></a> |
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<h2 style="padding-left:2em;"><a href="#acceptedIdentificationQualifier" class="wiki-page">acceptedIdentificationQualifier</a><a href="#acceptedIdentificationQualifier" class="wiki-anchor">¶</a></h2> |
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mappings/Veg+-VegCore.csv | ||
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133 | 133 |
interpretationType,identificationType |
134 | 134 |
identifiedDate,dateIdentified |
135 | 135 |
taxonFit,identificationQualifier |
136 |
annotations,identificationQualifier |
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136 | 137 |
overallScore,matchedTaxonFit_fraction |
137 | 138 |
familyScore,matchedFamilyFit_fraction |
138 | 139 |
genusScore,matchedGenusFit_fraction |
Also available in: Unified diff
mappings/VegCore.csv: Regenerated from wiki. This causes TNRS's Annotations (cf/aff) to be mapped into VegBIEN.