Project

General

Profile

« Previous | Next » 

Revision 7477

mappings/VegCore.csv: Regenerated from wiki. This causes TNRS's Annotations (cf/aff) to be mapped into VegBIEN.

View differences:

inputs/.TNRS/public.unscrubbed_taxondetermination_view/map.csv
24 24
Infraspecific_rank_2,UNUSED,,
25 25
Infraspecific_epithet_2_matched,UNUSED,,
26 26
Infraspecific_epithet_2_score,UNUSED,,
27
Annotations,*Annotations,,
27
Annotations,identificationQualifier,,
28 28
Unmatched_terms,morphospecies,,
29 29
Taxonomic_status,taxonomicStatus,,
30 30
Accepted_name,acceptedTaxonName,/_first/1,
inputs/.TNRS/public.unscrubbed_taxondetermination_view/VegBIEN.csv
75 75
Specific_epithet_score,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonconfidence/_max/3",
76 76
Max_score,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonconfidence/_max/4/_first/1",
77 77
Overall_score,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonconfidence/_max/4/_first/2",Assuming is a fraction based on the range of values
78
Annotations,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
78 79
Name_matched,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
79 80
:0,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",Enables the taxonoccurrence CHECK constraint to pass
80 81
:0,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/1,Enables the taxonoccurrence CHECK constraint to pass
......
118 119
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/_if[@name=""if has taxondetermination""]/then/taxonconfidence/_max/4/_first/2",Assuming is a fraction based on the range of values
119 120
:_,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value/_now,
120 121
:matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationtype,
122
Annotations,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
121 123
taxonoccurrence_id,/location/locationevent/taxonoccurrence/taxonoccurrence_id,
122 124
Accepted_name.Accepted_name_lsid,,** No join mapping for *Accepted_name.Accepted_name_lsid/_first/3 ** 
123 125
Accepted_name.Accepted_name_species,,** No join mapping for *Accepted_name.Accepted_name_species/_first/3 ** 
......
145 147
Accepted_name_lsid,,** No join mapping for *Accepted_name_lsid/_first/2 ** 
146 148
Accepted_name_species,,** No join mapping for *Accepted_name_species/_first/1 ** Also contains genus. Omitted because Accepted_name contains more info.
147 149
Accepted_name_url,,** No join mapping for *Accepted_name_url/_first/1 ** 
148
Annotations,,** No join mapping for *Annotations ** 
149 150
Author_score,,** No join mapping for *Author_score ** 
150 151
Infraspecific_epithet_2_matched,,** No non-empty join mapping for UNUSED ** 
151 152
Infraspecific_epithet_2_score,,** No non-empty join mapping for UNUSED ** 
inputs/.TNRS/public.unscrubbed_taxondetermination_view/test.xml.ref
157 157
                                            <4>$Max_score</4>
158 158
                                        </_max>
159 159
                                    </taxonconfidence>
160
                                    <taxonfit>$Annotations</taxonfit>
160 161
                                </taxondetermination>
161 162
                                <sourceaccessioncode>0</sourceaccessioncode>
162 163
                                <taxondetermination>
......
265 266
                                    </taxonconfidence>
266 267
                                    <determinationdate><_dateRangeStart><value><_now>_</_now></value></_dateRangeStart></determinationdate>
267 268
                                    <determinationtype>matched</determinationtype>
269
                                    <taxonfit>$Annotations</taxonfit>
268 270
                                </taxondetermination>
269 271
                                <taxonoccurrence_id>$taxonoccurrence_id</taxonoccurrence_id>
270 272
                            </taxonoccurrence>
inputs/.TNRS/public.unscrubbed_taxondetermination_view/unmapped_terms.csv
2 2
*Name_score
3 3
*Author_score
4 4
*Infraspecific_epithet_score
5
*Annotations
6 5
*Accepted_name_url
7 6
*Accepted_name_species
8 7
*Selected
mappings/VegCore.htm
6 6
<meta name="description" content="Redmine" />
7 7
<meta name="keywords" content="issue,bug,tracker" />
8 8
<meta content="authenticity_token" name="csrf-param" />
9
<meta content="2ndj/RHqeXAXO5vQjWKw5dYyzz9+CbZ0SBo1+y5YfJo=" name="csrf-token" />
9
<meta content="apfCDXVDxTLC49zvPELI8i4ozqGJEnNZwfPcn5G40GM=" name="csrf-token" />
10 10
<link rel='shortcut icon' href='/nceas/favicon.ico?1347421715' />
11 11
<link href="/nceas/stylesheets/jquery/jquery-ui-1.8.21.css?1357775071" media="all" rel="stylesheet" type="text/css" />
12 12
<link href="/nceas/stylesheets/application.css?1357775071" media="all" rel="stylesheet" type="text/css" />
......
333 333
</li><li><a href="#TaxonDetermination">TaxonDetermination</a><ul><li><ul><li><a href="#Identification">Identification</a></li><li><a href="#TaxonInterpretation">TaxonInterpretation</a></li></ul>
334 334
</li><li><a href="#identificationID">identificationID</a></li><li><a href="#identificationType">identificationType</a><ul><li><a href="#interpretationType">interpretationType</a></li></ul>
335 335
</li><li><a href="#identifiedBy">identifiedBy</a></li><li><a href="#dateIdentified">dateIdentified</a><ul><li><a href="#identifiedDate">identifiedDate</a></li></ul>
336
</li><li><a href="#yearIdentified">yearIdentified</a></li><li><a href="#monthIdentified">monthIdentified</a></li><li><a href="#dayIdentified">dayIdentified</a></li><li><a href="#identificationReferences">identificationReferences</a></li><li><a href="#identificationVerificationStatus">identificationVerificationStatus</a></li><li><a href="#identificationRemarks">identificationRemarks</a></li><li><a href="#identificationQualifier">identificationQualifier</a><ul><li><a href="#taxonFit">taxonFit</a></li></ul>
336
</li><li><a href="#yearIdentified">yearIdentified</a></li><li><a href="#monthIdentified">monthIdentified</a></li><li><a href="#dayIdentified">dayIdentified</a></li><li><a href="#identificationReferences">identificationReferences</a></li><li><a href="#identificationVerificationStatus">identificationVerificationStatus</a></li><li><a href="#identificationRemarks">identificationRemarks</a></li><li><a href="#identificationQualifier">identificationQualifier</a><ul><li><a href="#taxonFit">taxonFit</a></li><li><a href="#annotations">annotations</a></li></ul>
337 337
</li><li><a href="#acceptedIdentificationQualifier">acceptedIdentificationQualifier</a></li><li><a href="#originalIdentificationQualifier">originalIdentificationQualifier</a></li><li><a href="#matchedTaxonFit_fraction">matchedTaxonFit_fraction</a><ul><li><a href="#overallScore">overallScore</a></li></ul>
338 338
</li><li><a href="#matchedFamilyFit_fraction">matchedFamilyFit_fraction</a><ul><li><a href="#familyScore">familyScore</a></li></ul>
339 339
</li><li><a href="#matchedGenusFit_fraction">matchedGenusFit_fraction</a><ul><li><a href="#genusScore">genusScore</a></li></ul>
......
4437 4437
	<p style="padding-left:10em;">From: <a href="http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&#38;wparam=taxoninterpretation&#38;entity=dba_tabledescription&#38;where=where_tablename#taxonFit" class="external">VegBank</a></p>
4438 4438

  
4439 4439

  
4440
	<a name="annotations"></a>
4441
<h3  style="padding-left:7em;"><a href="#annotations" class="wiki-page">annotations</a><a href="#annotations" class="wiki-anchor">&para;</a></h3>
4442

  
4443

  
4444
	<p style="padding-left:10em;">From: <a href="http://tnrs.iplantcollaborative.org/instructions.html#detailed_download/Annotations" class="external">TNRS</a></p>
4445

  
4446

  
4440 4447
	<a name="acceptedIdentificationQualifier"></a>
4441 4448
<h2  style="padding-left:2em;"><a href="#acceptedIdentificationQualifier" class="wiki-page">acceptedIdentificationQualifier</a><a href="#acceptedIdentificationQualifier" class="wiki-anchor">&para;</a></h2>
4442 4449

  
mappings/Veg+-VegCore.csv
133 133
interpretationType,identificationType
134 134
identifiedDate,dateIdentified
135 135
taxonFit,identificationQualifier
136
annotations,identificationQualifier
136 137
overallScore,matchedTaxonFit_fraction
137 138
familyScore,matchedFamilyFit_fraction
138 139
genusScore,matchedGenusFit_fraction

Also available in: Unified diff