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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7326 almost 12 years Aaron Marcuse-Kubitza backups/Makefile: %.md5/test: Added comment to ...
  bin 7455 almost 12 years Aaron Marcuse-Kubitza redmine_synonyms: Ambiguous terms: Fixed bug wh...
  config 7390 almost 12 years Aaron Marcuse-Kubitza config/: Set svn:ignore to exclude *password files
  inputs 7477 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Regenerated from wiki. Th...
  lib 7397 almost 12 years Aaron Marcuse-Kubitza xml_dom.py: replace_with_text(): Added support ...
  mappings 7477 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Regenerated from wiki. Th...
  schemas 7466 almost 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Added _mm_to_m()
  to_do 7355 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.2013.xls: Updated with changes d...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 11.9 KB 7423 almost 12 years Aaron Marcuse-Kubitza root Makefile: misc-Linux: Added command to cop...
README.TXT 18 KB 7410 almost 12 years Aaron Marcuse-Kubitza README.TXT: Full database import: Updated time ...
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
7477 02/05/2013 06:08 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Regenerated from wiki. This causes TNRS's Annotations (cf/aff) to be mapped into VegBIEN.
7476 02/05/2013 06:05 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: matched*Fit_fraction: Remapped to taxonconfidence instead of taxonfit
7475 02/05/2013 05:56 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Fixed bug where need to remove duplicates, which are no longer supported by canon, by removing alternatives of ambiguous terms when these occur separately from their definitions
7474 02/05/2013 05:29 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Removed synonyms and ambiguous terms, since the canonicalization of them is handled by Veg+-VegCore.csv. This also reduces the time it takes canon to build the in-memory Python dict of replacements, which scales to all inputs and should speed up the build/test command.
7473 02/05/2013 05:22 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Removed synonyms, since the canonicalization of them is handled by Veg+-VegCore.csv
7472 02/05/2013 05:10 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Match terms by header # instead of matching all anchors, in order to include the leading ? before an ambiguous term
7471 02/05/2013 04:42 PM Aaron Marcuse-Kubitza

mappings/Makefile: Veg+-VegCore.csv: Generate dynamically from VegCore.htm, which allows the VegCore thesaurus to be automatically kept up to date. More importantly, it allows terms in all map spreadsheets to be updated simultaneously when a term is renamed (e.g. by replacing a term with one of its synonyms).
7470 02/05/2013 04:40 PM Aaron Marcuse-Kubitza

mappings/VegX-VegCore.csv: Applied term renamings from the new dynamically generated Veg+-VegCore.csv. Updates to VegCore term names that have occurred since the data dictionary was created are now able to take effect, which involves remapping several fields.
7469 02/05/2013 04:32 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv, inputs/*/*/map.csv: Applied term renamings from the new dynamically generated Veg+-VegCore.csv, which reflects the current state of the data dictionary. (Permanently switching to the new Veg+-VegCore.csv will be a separate change.) Updates to VegCore term names that have occurred since the data dictionary was created are now able to take effect, which involves remapping and inferring units on several fields.
7468 02/05/2013 04:27 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Mapped basalDiameter_in

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