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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7326 almost 12 years Aaron Marcuse-Kubitza backups/Makefile: %.md5/test: Added comment to ...
  bin 7455 almost 12 years Aaron Marcuse-Kubitza redmine_synonyms: Ambiguous terms: Fixed bug wh...
  config 7390 almost 12 years Aaron Marcuse-Kubitza config/: Set svn:ignore to exclude *password files
  inputs 7479 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Regenerated from wiki. Th...
  lib 7397 almost 12 years Aaron Marcuse-Kubitza xml_dom.py: replace_with_text(): Added support ...
  mappings 7479 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Regenerated from wiki. Th...
  schemas 7466 almost 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Added _mm_to_m()
  to_do 7355 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.2013.xls: Updated with changes d...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 11.9 KB 7423 almost 12 years Aaron Marcuse-Kubitza root Makefile: misc-Linux: Added command to cop...
README.TXT 18 KB 7410 almost 12 years Aaron Marcuse-Kubitza README.TXT: Full database import: Updated time ...
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
unmapped_terms.csv 13.1 KB 7201 about 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
7479 02/05/2013 06:19 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Regenerated from wiki. This adds cf_aff.
7478 02/05/2013 06:18 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Filter out namespaces by matching only terms whose header links within the data dictionary
7477 02/05/2013 06:08 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Regenerated from wiki. This causes TNRS's Annotations (cf/aff) to be mapped into VegBIEN.
7476 02/05/2013 06:05 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: matched*Fit_fraction: Remapped to taxonconfidence instead of taxonfit
7475 02/05/2013 05:56 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Fixed bug where need to remove duplicates, which are no longer supported by canon, by removing alternatives of ambiguous terms when these occur separately from their definitions
7474 02/05/2013 05:29 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Removed synonyms and ambiguous terms, since the canonicalization of them is handled by Veg+-VegCore.csv. This also reduces the time it takes canon to build the in-memory Python dict of replacements, which scales to all inputs and should speed up the build/test command.
7473 02/05/2013 05:22 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Removed synonyms, since the canonicalization of them is handled by Veg+-VegCore.csv
7472 02/05/2013 05:10 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.csv: Match terms by header # instead of matching all anchors, in order to include the leading ? before an ambiguous term
7471 02/05/2013 04:42 PM Aaron Marcuse-Kubitza

mappings/Makefile: Veg+-VegCore.csv: Generate dynamically from VegCore.htm, which allows the VegCore thesaurus to be automatically kept up to date. More importantly, it allows terms in all map spreadsheets to be updated simultaneously when a term is renamed (e.g. by replacing a term with one of its synonyms).
7470 02/05/2013 04:40 PM Aaron Marcuse-Kubitza

mappings/VegX-VegCore.csv: Applied term renamings from the new dynamically generated Veg+-VegCore.csv. Updates to VegCore term names that have occurred since the data dictionary was created are now able to take effect, which involves remapping several fields.

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