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Revision 7480

mappings/Makefile: VegCore.csv: Sort terms by name so that reordering terms in the VegCore data dictionary does not cause VegCore.csv to change. This makes it much easier to identify terms that were accidentally deleted during a data dictionary refactoring.

View differences:

mappings/VegCore.csv
2 2
OMIT
3 3
PRIVATE
4 4
UNUSED
5
datasource
6
type
7
referenceType
8
isHerbarium
9
modified
10
language
11
rights
12
rightsHolder
5
acceptedClass
6
acceptedCountry
7
acceptedCounty
8
acceptedCultivar
9
acceptedDecimalLatitude
10
acceptedDecimalLongitude
11
acceptedFamily
12
acceptedForma
13
acceptedGenus
14
acceptedIdentificationQualifier
15
acceptedInfraspecificEpithet
16
acceptedKingdom
17
acceptedNameUsage
18
acceptedNameUsageID
19
acceptedOrder
20
acceptedPhylum
21
acceptedScientificName
22
acceptedScientificNameAuthorship
23
acceptedScientificNameID
24
acceptedSpecificEpithet
25
acceptedStateProvince
26
acceptedSubspecies
27
acceptedTaxonName
28
acceptedTaxonRank
29
acceptedVariety
13 30
accessRights
31
acidity_fraction
32
acidity_percent
33
aggregateOrganismObservationID
34
associatedMedia
35
associatedOccurrences
36
associatedReferences
37
associatedSequences
38
associatedTaxa
39
authorEventCode
40
authorStemCode
41
authorTaxonCode
42
barcode
43
basalDiameter_cm
44
basalDiameter_in
45
basalDiameter_m
46
baseSaturation_fraction
47
baseSaturation_percent
48
basisOfRecord
49
bed
50
behavior
14 51
bibliographicCitation
15
references
16
institutionID
52
calcium_fraction
53
calcium_percent
54
canopyForm
55
canopyPosition
56
carbon_fraction
57
carbon_percent
58
catalogNumber
59
cationExchangeCapacity_cmol_kg
60
cationExchangeCapacity_meq_100g
61
censusNumber
62
class
63
clay_fraction
64
clay_percent
65
collectionCode
17 66
collectionID
67
communityID
68
communityName
69
conductivity
70
continent
71
coordinatePrecision_deg
72
coordinateSource
73
coordinateUncertaintyInMeters
74
country
75
countryCode
76
county
77
coverPercent
78
cultivar
79
cultivated
80
cultivatedBasis
81
dataGeneralizations
18 82
datasetID
19
institutionCode
20
collectionCode
21 83
datasetName
22
ownerInstitutionCode
23
basisOfRecord
24
informationWithheld
25
dataGeneralizations
84
datasetRecordID
85
datasource
86
datasourceRecordID
87
dateCollected
88
dateIdentified
89
day
90
dayCollected
91
dayIdentified
92
decimalLatitude
93
decimalLongitude
94
diameterBreastHeightGentry_cm
95
diameterBreastHeightGentry_in
96
diameterBreastHeightGentry_m
97
diameterBreastHeight_cm
98
diameterBreastHeight_in
99
diameterBreastHeight_m
100
disposition
101
distanceAboveSurfaceInMeters
102
distanceToCountry_km
103
distanceToCountry_m
104
distanceToStateProvince_km
105
distanceToStateProvince_m
26 106
dynamicProperties
27
samplingProtocolID
28
samplingProtocol
29
samplingEffort
30
observationGranularity
31
observationMeasure
32
projectID
33
projectName
34
projectStartDate
35
projectEndDate
36
eventID
37
eventDate
38
startDate
107
earliestAgeOrLowestStage
108
earliestEonOrLowestEonothem
109
earliestEpochOrLowestSeries
110
earliestEraOrLowestErathem
111
earliestPeriodOrLowestSystem
112
elevationInMeters
39 113
endDate
40
eventTime
41
startDayOfYear
42 114
endDayOfYear
43
year
44
month
45
day
46
verbatimEventDate
47
habitat
48
authorEventCode
115
establishmentMeans
116
eventDate
117
eventID
49 118
eventRemarks
50
decimalLatitude
51
acceptedDecimalLatitude
52
decimalLongitude
53
acceptedDecimalLongitude
54
coordinateSource
55
longitude_DMS
56
latitude_DMS
57
verbatimCoordinates
58
verbatimLatitude
59
verbatimLongitude
60
verbatimCoordinateSystem
61
verbatimSRS
62
geodeticDatum
63
coordinateUncertaintyInMeters
64
coordinatePrecision_deg
65
pointRadiusSpatialFit
66
footprintWKT
119
eventTime
120
family
67 121
footprintSRS
68 122
footprintSpatialFit
123
footprintWKT
124
forma
125
formation
126
genus
127
geodeticDatum
128
geologicalContextID
129
georeferenceProtocol
130
georeferenceRemarks
131
georeferenceSources
132
georeferenceVerificationStatus
133
georeferencedBy
134
georeferencedDate
135
geovalid
136
globalUniqueIdentifier_SpeciesLink
137
group
138
growthForm
139
habitat
140
heightFirstBranch_ft
141
heightFirstBranch_m
142
height_ft
143
height_m
144
higherClassification
145
higherGeography
69 146
higherGeographyID
70
higherGeography
71
continent
72
waterBody
147
higherPlantGroup
148
highestBiostratigraphicZone
149
identificationID
150
identificationQualifier
151
identificationReferences
152
identificationRemarks
153
identificationType
154
identificationVerificationStatus
155
identifiedBy
156
individualCode
157
individualCount
158
individualCount_10cm_or_more
159
individualCount_1cm_or_more
160
individualCount_2_5cm_or_more
161
individualID
162
individualObservationID
163
informationWithheld
164
infraspecificEpithet
165
institutionCode
166
institutionID
167
intercept_cm
168
intercept_m
169
isHerbarium
170
isNewWorld
171
island
73 172
islandGroup
74
island
75
country
76
acceptedCountry
77
countryCode
78
stateProvince
79
acceptedStateProvince
80
county
81
acceptedCounty
82
municipality
83
locality
84
verbatimLocality
85
geovalid
173
kingdom
174
landform
175
language
176
latLongDomainInvalid
86 177
latLongDomainValid
87
latLongDomainInvalid
88 178
latLongInCountry
89
distanceToCountry_m
90
distanceToCountry_km
179
latLongInCounty
91 180
latLongInStateProvince
92
distanceToStateProvince_m
93
distanceToStateProvince_km
94
latLongInCounty
95
isNewWorld
96
georeferencedBy
97
georeferencedDate
98
georeferenceProtocol
99
georeferenceSources
100
georeferenceVerificationStatus
101
georeferenceRemarks
181
latestAgeOrHighestStage
182
latestEonOrHighestEonothem
183
latestEpochOrHighestSeries
184
latestEraOrHighestErathem
185
latestPeriodOrHighestSystem
186
latitude_DMS
187
lianaInfestation
188
lifeStage
189
lithostratigraphicTerms
190
locality
191
locationAccordingTo
102 192
locationID
103 193
locationName
104
parentLocationID
105
parentPlotName
106
locationAccordingTo
107 194
locationRemarks
108
elevationInMeters
109
verbatimElevation
110
verbatimElevation_m
111
minimumElevationInMeters
112
minimumElevation_verbatim
195
longitude_DMS
196
lowestBiostratigraphicZone
197
magnesium_fraction
198
magnesium_percent
199
matchedFamilyFit_fraction
200
matchedGenusFit_fraction
201
matchedSpeciesFit_fraction
202
matchedTaxonFit_fraction
203
maxSlopeAspect
204
maxSlopeGradient
205
maximumDepthInMeters
206
maximumDepth_verbatim
207
maximumDistanceAboveSurfaceInMeters
113 208
maximumElevationInMeters
114 209
maximumElevation_verbatim
115
verbatimDepth
210
measurementAccuracy
211
measurementDeterminedBy
212
measurementDeterminedDate
213
measurementID
214
measurementMethod
215
measurementRemarks
216
measurementType
217
measurementUnit
218
measurementValue
219
member
220
minSlopeAspect
221
minSlopeGradient
116 222
minimumDepthInMeters
117 223
minimumDepth_verbatim
118
maximumDepthInMeters
119
maximumDepth_verbatim
120
distanceAboveSurfaceInMeters
121 224
minimumDistanceAboveSurfaceInMeters
122
maximumDistanceAboveSurfaceInMeters
123
plotArea_m2
124
plotArea_ha
125
slopeAspect
126
minSlopeAspect
127
maxSlopeAspect
128
slopeGradient
129
minSlopeGradient
130
maxSlopeGradient
131
landform
132
temperature_C
133
temperature_F
134
precipitation_m
135
precipitation_mm
225
minimumElevationInMeters
226
minimumElevation_verbatim
227
modified
228
month
229
monthCollected
230
monthIdentified
231
morphoname
232
morphospecies
233
municipality
234
nameAccordingTo
235
nameAccordingToID
236
namePublishedIn
237
namePublishedInID
238
namePublishedInYear
239
nitrogen_fraction
240
nitrogen_percent
241
nomenclaturalCode
242
nomenclaturalStatus
243
observationGranularity
244
observationMeasure
245
occurrenceID
246
occurrenceRemarks
247
occurrenceStatus
248
oldGrowth
249
order
250
organic_fraction
251
organic_percent
252
organismNotes
253
organismX_m
254
organismY_m
255
originalClass
256
originalCultivar
257
originalFamily
258
originalForma
259
originalGenus
260
originalIdentificationQualifier
261
originalInfraspecificEpithet
262
originalKingdom
263
originalNameUsage
264
originalNameUsageID
265
originalOrder
266
originalPhylum
267
originalScientificName
268
originalScientificNameAuthorship
269
originalSpecificEpithet
270
originalSubspecies
271
originalTaxonName
272
originalTaxonRank
273
originalVariety
274
otherCatalogNumbers
275
ownerInstitutionCode
276
parentLocationID
277
parentNameUsage
278
parentNameUsageID
279
parentPlotName
280
parentScientificNameID
281
parentTaxonConceptID
282
parentTaxonID
283
ph
136 284
phosphorus_fraction
137 285
phosphorus_percent
286
phylum
287
plotArea_ha
288
plotArea_m2
289
pointRadiusSpatialFit
138 290
potassium_fraction
139 291
potassium_percent
140
magnesium_fraction
141
magnesium_percent
142
nitrogen_fraction
143
nitrogen_percent
144
carbon_fraction
145
carbon_percent
146
calcium_fraction
147
calcium_percent
148
sodium_fraction
149
sodium_percent
150
acidity_fraction
151
acidity_percent
152
organic_fraction
153
organic_percent
154
texture
292
precipitation_m
293
precipitation_mm
294
preparations
295
previousIdentifications
296
projectEndDate
297
projectID
298
projectName
299
projectStartDate
300
recordNumber
301
recordedBy
302
recordedBy_givenName
303
recordedBy_middleName
304
recordedBy_surName
305
referenceType
306
references
307
relatedResourceID
308
relationshipAccordingTo
309
relationshipEstablishedDate
310
relationshipOfResource
311
relationshipRemarks
312
reproductiveCondition
313
resourceID
314
resourceRelationshipID
315
rights
316
rightsHolder
317
samplingEffort
318
samplingProtocol
319
samplingProtocolID
155 320
sand_fraction
156 321
sand_percent
322
scientificName
323
scientificNameAuthorship
324
scientificNameID
325
sex
157 326
silt_fraction
158 327
silt_percent
159
clay_fraction
160
clay_percent
161
ph
162
cationExchangeCapacity_cmol_kg
163
cationExchangeCapacity_meq_100g
164
baseSaturation_fraction
165
baseSaturation_percent
166
conductivity
328
slopeAspect
329
slopeGradient
330
sodium_fraction
331
sodium_percent
332
speciesBinomial
333
specificEpithet
334
startDate
335
startDayOfYear
336
stateProvince
337
stemCount
338
stemID
339
stemNotes
340
stemTag
341
subgenus
342
subplot
167 343
subplotID
168
subplot
169 344
subplotX
170 345
subplotY
171
geologicalContextID
172
earliestEonOrLowestEonothem
173
latestEonOrHighestEonothem
174
earliestEraOrLowestErathem
175
latestEraOrHighestErathem
176
earliestPeriodOrLowestSystem
177
latestPeriodOrHighestSystem
178
earliestEpochOrLowestSeries
179
latestEpochOrHighestSeries
180
earliestAgeOrLowestStage
181
latestAgeOrHighestStage
182
lowestBiostratigraphicZone
183
highestBiostratigraphicZone
184
lithostratigraphicTerms
185
group
186
formation
187
member
188
bed
189
communityID
190
communityName
191
occurrenceID
192
globalUniqueIdentifier_SpeciesLink
193
datasetRecordID
194
datasourceRecordID
195
occurrenceRemarks
196
recordNumber
197
recordedBy
198
recordedBy_givenName
199
recordedBy_middleName
200
recordedBy_surName
201
occurrenceStatus
202
previousIdentifications
203
associatedMedia
204
associatedReferences
205
associatedOccurrences
206
associatedSequences
207
associatedTaxa
346
subspecies
347
tag
348
taxonConceptID
208 349
taxonID
209
parentTaxonID
210
scientificNameID
211
acceptedScientificNameID
212
parentScientificNameID
213
acceptedNameUsageID
214
parentNameUsageID
215
originalNameUsageID
216
namePublishedInID
217
scientificName
350
taxonIsCanonical
218 351
taxonName
219
acceptedTaxonName
220
originalTaxonName
221 352
taxonNameOrEpithet
222
verbatimTaxonName
223
acceptedScientificName
224
originalScientificName
225
verbatimScientificName
226 353
taxonNameWithMorphospecies
227
morphoname
228
speciesBinomial
229
acceptedNameUsage
230
parentNameUsage
231
originalNameUsage
232
namePublishedIn
233
namePublishedInYear
234
higherClassification
235
higherPlantGroup
236
kingdom
237
acceptedKingdom
238
originalKingdom
239
phylum
240
acceptedPhylum
241
originalPhylum
242
class
243
acceptedClass
244
originalClass
245
order
246
acceptedOrder
247
originalOrder
248
family
249
acceptedFamily
250
originalFamily
251
genus
252
acceptedGenus
253
originalGenus
254
subgenus
255
specificEpithet
256
acceptedSpecificEpithet
257
originalSpecificEpithet
258
morphospecies
259
infraspecificEpithet
260
acceptedInfraspecificEpithet
261
originalInfraspecificEpithet
262
forma
263
acceptedForma
264
originalForma
354
taxonObservationID
355
taxonOccurrenceID
356
taxonOccurrencePkey
357
taxonRank
358
taxonRemarks
359
taxonomicStatus
360
temperature_C
361
temperature_F
362
texture
363
threatened
364
type
365
typeStatus
265 366
variety
266
acceptedVariety
267
originalVariety
268
cultivar
269
acceptedCultivar
270
originalCultivar
271
subspecies
272
acceptedSubspecies
273
originalSubspecies
274
taxonRank
275
acceptedTaxonRank
276
originalTaxonRank
367
verbatimCoordinateSystem
368
verbatimCoordinates
369
verbatimDepth
370
verbatimElevation
371
verbatimElevation_m
372
verbatimEventDate
373
verbatimLatitude
374
verbatimLocality
375
verbatimLongitude
376
verbatimSRS
377
verbatimScientificName
378
verbatimTaxonName
277 379
verbatimTaxonRank
278
scientificNameAuthorship
279
acceptedScientificNameAuthorship
280
originalScientificNameAuthorship
281 380
vernacularName
282
nomenclaturalCode
283
taxonomicStatus
284
taxonIsCanonical
285
nomenclaturalStatus
286
taxonRemarks
287
threatened
288
taxonConceptID
289
parentTaxonConceptID
290
nameAccordingTo
291
nameAccordingToID
292
authorTaxonCode
293
taxonOccurrencePkey
294
taxonOccurrenceID
295
dateCollected
381
voucherType
382
waterBody
383
year
296 384
yearCollected
297
monthCollected
298
dayCollected
299
growthForm
300
oldGrowth
301
identificationID
302
identificationType
303
identifiedBy
304
dateIdentified
305 385
yearIdentified
306
monthIdentified
307
dayIdentified
308
identificationReferences
309
identificationVerificationStatus
310
identificationRemarks
311
identificationQualifier
312
acceptedIdentificationQualifier
313
originalIdentificationQualifier
314
matchedTaxonFit_fraction
315
matchedFamilyFit_fraction
316
matchedGenusFit_fraction
317
matchedSpeciesFit_fraction
318
typeStatus
319
taxonObservationID
320
aggregateOrganismObservationID
321
individualCount
322
coverPercent
323
intercept_m
324
intercept_cm
325
individualCount_1cm_or_more
326
individualCount_2_5cm_or_more
327
individualCount_10cm_or_more
328
individualID
329
tag
330
individualObservationID
331
individualCode
332
organismX_m
333
organismY_m
334
censusNumber
335
stemCount
336
sex
337
lifeStage
338
reproductiveCondition
339
behavior
340
establishmentMeans
341
cultivated
342
cultivatedBasis
343
canopyForm
344
canopyPosition
345
lianaInfestation
346
organismNotes
347
stemID
348
stemTag
349
authorStemCode
350
height_m
351
height_ft
352
heightFirstBranch_m
353
heightFirstBranch_ft
354
diameterBreastHeight_m
355
diameterBreastHeight_cm
356
diameterBreastHeight_in
357
diameterBreastHeightGentry_m
358
diameterBreastHeightGentry_cm
359
diameterBreastHeightGentry_in
360
basalDiameter_m
361
basalDiameter_cm
362
basalDiameter_in
363
stemNotes
364
barcode
365
catalogNumber
366
preparations
367
disposition
368
otherCatalogNumbers
369
voucherType
370
measurementID
371
measurementType
372
measurementValue
373
measurementAccuracy
374
measurementUnit
375
measurementDeterminedDate
376
measurementDeterminedBy
377
measurementMethod
378
measurementRemarks
379
resourceRelationshipID
380
resourceID
381
relatedResourceID
382
relationshipOfResource
383
relationshipAccordingTo
384
relationshipEstablishedDate
385
relationshipRemarks
mappings/Makefile
28 28
	php -r 'fpassthru(fopen("https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore", "r"));' >$@
29 29

  
30 30
VegCore.csv: VegCore.htm
31
	(echo VegCore; $(sed) -n 's/^.*<h[24][^>]*><a href="#[^>]*>(([a-z]|[A-Z]{2})[^<]*)<\/a><a href="#[^"-]+".*$$/\1/p')\
32
<$< >$@
31
	(echo VegCore; $(sed) -n 's/^.*<h[24][^>]*><a href="#[^>]*>(([a-z]|[A-Z]{2})[^<]*)<\/a><a href="#[^"-]+".*$$/\1/p'\
32
|sort -u) <$< >$@
33 33

  
34 34
Veg+-VegCore.csv: VegCore.htm
35 35
	(echo "Veg+,VegCore"; $(bin)/redmine_synonyms|grep -vE '^\??[A-Z][a-z]')\

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