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Revision 7485

Renamed mappings/VegCore.csv to VegCore.vocab.csv and Veg+-VegCore.csv to VegCore.thesaurus.csv for clarity

View differences:

mappings/Veg+-VegCore.csv
1
Veg+,VegCore
2
?DBH,"?diameterBreastHeight_m,diameterBreastHeight_cm,diameterBreastHeight_in"
3
?acidity,"?acidity_fraction,acidity_percent"
4
?area,"?plotArea_m2,plotArea_ha"
5
?basalDiam,"?basalDiameter_m,basalDiameter_cm,basalDiameter_in"
6
?basalDiameter,"?basalDiameter_m,basalDiameter_cm,basalDiameter_in"
7
?baseSaturation,"?baseSaturation_fraction,baseSaturation_percent"
8
?calcium,"?calcium_fraction,calcium_percent"
9
?carbon,"?carbon_fraction,carbon_percent"
10
?cationExchangeCapacity,"?cationExchangeCapacity_cmol_kg,cationExchangeCapacity_meq_100g"
11
?clay,"?clay_fraction,clay_percent"
12
?depth,verbatimDepth
13
?diameterBreastHeight,"?diameterBreastHeight_m,diameterBreastHeight_cm,diameterBreastHeight_in"
14
?diameterBreastHeightGentry,"?diameterBreastHeightGentry_m,diameterBreastHeightGentry_cm,diameterBreastHeightGentry_in"
15
?distErrCountry,"?distanceToCountry_m,distanceToCountry_km"
16
?distErrStateProvince,"?distanceToStateProvince_m,distanceToStateProvince_km"
17
?distanceToCountry,"?distanceToCountry_m,distanceToCountry_km"
18
?distanceToStateProvince,"?distanceToStateProvince_m,distanceToStateProvince_km"
19
?elevation,"?elevationInMeters,verbatimElevation,verbatimElevation_m"
20
?exchangeCapacity,"?cationExchangeCapacity_cmol_kg,cationExchangeCapacity_meq_100g"
21
?fieldNotes,"?organismNotes,eventRemarks"
22
?fieldNumber,"?recordNumber,authorEventCode"
23
?gentryDbh,"?diameterBreastHeightGentry_m,diameterBreastHeightGentry_cm,diameterBreastHeightGentry_in"
24
?globalUniqueIdentifier,"?occurrenceID,datasourceRecordID"
25
?height,"?height_m,height_ft"
26
?heightFirstBranch,"?heightFirstBranch_m,heightFirstBranch_ft"
27
?intercept,"?intercept_m,intercept_cm"
28
?magnesium,"?magnesium_fraction,magnesium_percent"
29
?maximumDepth,"?maximumDepthInMeters,maximumDepth_verbatim"
30
?maximumElevation,"?maximumElevationInMeters,maximumElevation_verbatim"
31
?minimumDepth,"?minimumDepthInMeters,minimumDepth_verbatim"
32
?minimumElevation,"?minimumElevationInMeters,minimumElevation_verbatim"
33
?nitrogen,"?nitrogen_fraction,nitrogen_percent"
34
?notes,"?organismNotes,locationRemarks"
35
?observationType,"?observationMeasure,observationGranularity"
36
?organic,"?organic_fraction,organic_percent"
37
?phosphorus,"?phosphorus_fraction,phosphorus_percent"
38
?plotArea,"?plotArea_m2,plotArea_ha"
39
?potassium,"?potassium_fraction,potassium_percent"
40
?precipitation,"?precipitation_m,precipitation_mm"
41
?realLatitude,PRIVATE
42
?realLongitude,PRIVATE
43
?sand,"?sand_fraction,sand_percent"
44
?silt,"?silt_fraction,silt_percent"
45
?sodium,"?sodium_fraction,sodium_percent"
46
?soilAcidity,"?acidity_fraction,acidity_percent"
47
?soilC,"?carbon_fraction,carbon_percent"
48
?soilCa,"?calcium_fraction,calcium_percent"
49
?soilCationCap,"?cationExchangeCapacity_cmol_kg,cationExchangeCapacity_meq_100g"
50
?soilClay,"?clay_fraction,clay_percent"
51
?soilNa,"?sodium_fraction,sodium_percent"
52
?soilOrganic,"?organic_fraction,organic_percent"
53
?soilSand,"?sand_fraction,sand_percent"
54
?soilSilt,"?silt_fraction,silt_percent"
55
?species,"?specificEpithet,speciesBinomial"
56
?stemDbh,"?diameterBreastHeight_m,diameterBreastHeight_cm,diameterBreastHeight_in"
57
?stemHeight,"?height_m,height_ft"
58
?temperature,"?temperature_C,temperature_F"
59
ID,datasourceRecordID
60
abund10cm,individualCount_10cm_or_more
61
abund1cm,individualCount_1cm_or_more
62
abund2_5cm,individualCount_2_5cm_or_more
63
accession,catalogNumber
64
accessionNumber,catalogNumber
65
accordingTo,nameAccordingTo
66
aggregateOccurrenceID,aggregateOrganismObservationID
67
aggregatorOrPrimary,referenceType
68
annotations,identificationQualifier
69
authorObsCode,authorEventCode
70
authorPlantCode,individualCode
71
authorPlantName,authorTaxonCode
72
authorPlotCode,locationName
73
boundingBox,footprintWKT
74
censusID,eventID
75
censusNo,censusNumber
76
cf_aff,identificationQualifier
77
collectedDate,dateCollected
78
collector,recordedBy
79
collectorNumber,recordNumber
80
communityConceptName,communityName
81
continentOcean,continent
82
coordinateSource_bien,coordinateSource
83
countryName,country
84
cultivatedBasis_bien,cultivatedBasis
85
cultivated_bien,cultivated
86
cv,cultivar
87
dataset,datasetName
88
datasourceName,datasource
89
dateLastModified,modified
90
dcterms_accessRights,accessRights
91
dcterms_bibliographicCitation,bibliographicCitation
92
dcterms_language,language
93
dcterms_modified,modified
94
dcterms_references,references
95
dcterms_rights,rights
96
dcterms_rightsHolder,rightsHolder
97
dcterms_type,type
98
descriptionOfSite,locality
99
detType,voucherType
100
familyScore,matchedFamilyFit_fraction
101
fieldNotes_DwC_curatorial,organismNotes
102
fieldNotes_DwC_terms,eventRemarks
103
fieldNumber_DwC_curatorial,recordNumber
104
fieldNumber_DwC_terms,authorEventCode
105
fm,forma
106
genusScore,matchedGenusFit_fraction
107
georeferenceProtocol_bien,georeferenceProtocol
108
globalUniqueIdentifier_DwC,occurrenceID
109
globalUniqueIdentifier_SpeciesLink,datasourceRecordID
110
habit,growthForm
111
higherPlantGroup_bien,higherPlantGroup
112
htFirstBranch_m,heightFirstBranch_m
113
identificationLabel,tag
114
identifiedDate,dateIdentified
115
individualOrganismObservationID,individualObservationID
116
individualOrganismObservationRelativeX,organismX_m
117
individualOrganismObservationRelativeY,organismY_m
118
interpretationType,identificationType
119
isBadLatLong,latLongDomainInvalid
120
isGeovalid,geovalid
121
isInCountry,latLongInCountry
122
isInCountyParish,latLongInCounty
123
isInStateProvince,latLongInStateProvince
124
isNewWorld_bien,isNewWorld
125
isValidLatLong,latLongDomainValid
126
julianDay,startDayOfYear
127
latitude,decimalLatitude
128
locationNarrative,locality
129
locationNumber,locationName
130
longitude,decimalLongitude
131
method,samplingProtocol
132
methodology,samplingProtocol
133
museumAccessionNumber,catalogNumber
134
notes_Madidi,locationRemarks
135
notes_SALVIAS,organismNotes
136
obsEndDate,endDate
137
obsStartDate,startDate
138
observationType_BIEN2,observationGranularity
139
observationType_SALVIAS,observationMeasure
140
overallScore,matchedTaxonFit_fraction
141
phenology,reproductiveCondition
142
plotCensusNumber,authorEventCode
143
plotID,locationID
144
plotMethodology,samplingProtocol
145
plotName,locationName
146
plotNote,locationRemarks
147
plotNotes,locationRemarks
148
plotRelativeX,subplotX
149
plotRelativeY,subplotY
150
plotUniqueIdentifierID,locationID
151
pottasium,"?potassium_fraction,potassium_percent"
152
precip_mm,precipitation_mm
153
preparation,preparations
154
preparationType,preparations
155
previousCatalogNumber,otherCatalogNumbers
156
projectTitle,projectName
157
quadratID,subplotID
158
quadratName,subplot
159
relatedCatalogItem,relatedResourceID
160
relationshipType,relationshipOfResource
161
remarks,organismNotes
162
scientificNameAuthor,scientificNameAuthorship
163
shapeOfSite,footprintWKT
164
soilConductivity,conductivity
165
soilTexture,texture
166
speciesInvID,taxonObservationID
167
speciesName,specificEpithet
168
species_DwC,specificEpithet
169
species_VegBank,speciesBinomial
170
specificEpithetScore,matchedSpeciesFit_fraction
171
ssp,subspecies
172
startX,subplotX
173
startY,subplotY
174
state,stateProvince
175
stemCanopyForm,canopyForm
176
stemCanopyPosition,canopyPosition
177
stemCode,authorStemCode
178
stemLianaInfestation,lianaInfestation
179
stemTag2,stemTag
180
subspeciesName,subspecies
181
tag2,tag
182
taxonFit,identificationQualifier
183
taxonIsAccepted,taxonIsCanonical
184
taxonNameUsageConceptID,taxonOccurrenceID
185
temp_C,temperature_C
186
timeOfDay,eventTime
187
traitName,measurementType
188
traitValue,measurementValue
189
unit,measurementUnit
190
var,variety
mappings/VegCore.csv
1
VegCore
2
OMIT
3
PRIVATE
4
UNUSED
5
acceptedClass
6
acceptedCountry
7
acceptedCounty
8
acceptedCultivar
9
acceptedDecimalLatitude
10
acceptedDecimalLongitude
11
acceptedFamily
12
acceptedForma
13
acceptedGenus
14
acceptedIdentificationQualifier
15
acceptedInfraspecificEpithet
16
acceptedKingdom
17
acceptedNameUsage
18
acceptedNameUsageID
19
acceptedOrder
20
acceptedPhylum
21
acceptedScientificName
22
acceptedScientificNameAuthorship
23
acceptedScientificNameID
24
acceptedSpecificEpithet
25
acceptedStateProvince
26
acceptedSubspecies
27
acceptedTaxonName
28
acceptedTaxonRank
29
acceptedVariety
30
accessRights
31
acidity_fraction
32
acidity_percent
33
aggregateOrganismObservationID
34
associatedMedia
35
associatedOccurrences
36
associatedReferences
37
associatedSequences
38
associatedTaxa
39
authorEventCode
40
authorStemCode
41
authorTaxonCode
42
barcode
43
basalDiameter_cm
44
basalDiameter_in
45
basalDiameter_m
46
baseSaturation_fraction
47
baseSaturation_percent
48
basisOfRecord
49
bed
50
behavior
51
bibliographicCitation
52
calcium_fraction
53
calcium_percent
54
canopyForm
55
canopyPosition
56
carbon_fraction
57
carbon_percent
58
catalogNumber
59
cationExchangeCapacity_cmol_kg
60
cationExchangeCapacity_meq_100g
61
censusNumber
62
class
63
clay_fraction
64
clay_percent
65
collectionCode
66
collectionID
67
communityID
68
communityName
69
conductivity
70
continent
71
coordinatePrecision_deg
72
coordinateSource
73
coordinateUncertaintyInMeters
74
country
75
countryCode
76
county
77
coverPercent
78
cultivar
79
cultivated
80
cultivatedBasis
81
dataGeneralizations
82
datasetID
83
datasetName
84
datasetRecordID
85
datasource
86
datasourceRecordID
87
dateCollected
88
dateIdentified
89
day
90
dayCollected
91
dayIdentified
92
decimalLatitude
93
decimalLongitude
94
diameterBreastHeightGentry_cm
95
diameterBreastHeightGentry_in
96
diameterBreastHeightGentry_m
97
diameterBreastHeight_cm
98
diameterBreastHeight_in
99
diameterBreastHeight_m
100
disposition
101
distanceAboveSurfaceInMeters
102
distanceToCountry_km
103
distanceToCountry_m
104
distanceToStateProvince_km
105
distanceToStateProvince_m
106
dynamicProperties
107
earliestAgeOrLowestStage
108
earliestEonOrLowestEonothem
109
earliestEpochOrLowestSeries
110
earliestEraOrLowestErathem
111
earliestPeriodOrLowestSystem
112
elevationInMeters
113
endDate
114
endDayOfYear
115
establishmentMeans
116
eventDate
117
eventID
118
eventRemarks
119
eventTime
120
family
121
footprintSRS
122
footprintSpatialFit
123
footprintWKT
124
forma
125
formation
126
genus
127
geodeticDatum
128
geologicalContextID
129
georeferenceProtocol
130
georeferenceRemarks
131
georeferenceSources
132
georeferenceVerificationStatus
133
georeferencedBy
134
georeferencedDate
135
geovalid
136
globalUniqueIdentifier_SpeciesLink
137
group
138
growthForm
139
habitat
140
heightFirstBranch_ft
141
heightFirstBranch_m
142
height_ft
143
height_m
144
higherClassification
145
higherGeography
146
higherGeographyID
147
higherPlantGroup
148
highestBiostratigraphicZone
149
identificationID
150
identificationQualifier
151
identificationReferences
152
identificationRemarks
153
identificationType
154
identificationVerificationStatus
155
identifiedBy
156
individualCode
157
individualCount
158
individualCount_10cm_or_more
159
individualCount_1cm_or_more
160
individualCount_2_5cm_or_more
161
individualID
162
individualObservationID
163
informationWithheld
164
infraspecificEpithet
165
institutionCode
166
institutionID
167
intercept_cm
168
intercept_m
169
isHerbarium
170
isNewWorld
171
island
172
islandGroup
173
kingdom
174
landform
175
language
176
latLongDomainInvalid
177
latLongDomainValid
178
latLongInCountry
179
latLongInCounty
180
latLongInStateProvince
181
latestAgeOrHighestStage
182
latestEonOrHighestEonothem
183
latestEpochOrHighestSeries
184
latestEraOrHighestErathem
185
latestPeriodOrHighestSystem
186
latitude_DMS
187
lianaInfestation
188
lifeStage
189
lithostratigraphicTerms
190
locality
191
locationAccordingTo
192
locationID
193
locationName
194
locationRemarks
195
longitude_DMS
196
lowestBiostratigraphicZone
197
magnesium_fraction
198
magnesium_percent
199
matchedFamilyFit_fraction
200
matchedGenusFit_fraction
201
matchedSpeciesFit_fraction
202
matchedTaxonFit_fraction
203
maxSlopeAspect
204
maxSlopeGradient
205
maximumDepthInMeters
206
maximumDepth_verbatim
207
maximumDistanceAboveSurfaceInMeters
208
maximumElevationInMeters
209
maximumElevation_verbatim
210
measurementAccuracy
211
measurementDeterminedBy
212
measurementDeterminedDate
213
measurementID
214
measurementMethod
215
measurementRemarks
216
measurementType
217
measurementUnit
218
measurementValue
219
member
220
minSlopeAspect
221
minSlopeGradient
222
minimumDepthInMeters
223
minimumDepth_verbatim
224
minimumDistanceAboveSurfaceInMeters
225
minimumElevationInMeters
226
minimumElevation_verbatim
227
modified
228
month
229
monthCollected
230
monthIdentified
231
morphoname
232
morphospecies
233
municipality
234
nameAccordingTo
235
nameAccordingToID
236
namePublishedIn
237
namePublishedInID
238
namePublishedInYear
239
nitrogen_fraction
240
nitrogen_percent
241
nomenclaturalCode
242
nomenclaturalStatus
243
observationGranularity
244
observationMeasure
245
occurrenceID
246
occurrenceRemarks
247
occurrenceStatus
248
oldGrowth
249
order
250
organic_fraction
251
organic_percent
252
organismNotes
253
organismX_m
254
organismY_m
255
originalClass
256
originalCultivar
257
originalFamily
258
originalForma
259
originalGenus
260
originalIdentificationQualifier
261
originalInfraspecificEpithet
262
originalKingdom
263
originalNameUsage
264
originalNameUsageID
265
originalOrder
266
originalPhylum
267
originalScientificName
268
originalScientificNameAuthorship
269
originalSpecificEpithet
270
originalSubspecies
271
originalTaxonName
272
originalTaxonRank
273
originalVariety
274
otherCatalogNumbers
275
ownerInstitutionCode
276
parentLocationID
277
parentNameUsage
278
parentNameUsageID
279
parentPlotName
280
parentScientificNameID
281
parentTaxonConceptID
282
parentTaxonID
283
ph
284
phosphorus_fraction
285
phosphorus_percent
286
phylum
287
plotArea_ha
288
plotArea_m2
289
pointRadiusSpatialFit
290
potassium_fraction
291
potassium_percent
292
precipitation_m
293
precipitation_mm
294
preparations
295
previousIdentifications
296
projectEndDate
297
projectID
298
projectName
299
projectStartDate
300
recordNumber
301
recordedBy
302
recordedBy_givenName
303
recordedBy_middleName
304
recordedBy_surName
305
referenceType
306
references
307
relatedResourceID
308
relationshipAccordingTo
309
relationshipEstablishedDate
310
relationshipOfResource
311
relationshipRemarks
312
reproductiveCondition
313
resourceID
314
resourceRelationshipID
315
rights
316
rightsHolder
317
samplingEffort
318
samplingProtocol
319
samplingProtocolID
320
sand_fraction
321
sand_percent
322
scientificName
323
scientificNameAuthorship
324
scientificNameID
325
sex
326
silt_fraction
327
silt_percent
328
slopeAspect
329
slopeGradient
330
sodium_fraction
331
sodium_percent
332
speciesBinomial
333
specificEpithet
334
startDate
335
startDayOfYear
336
stateProvince
337
stemCount
338
stemID
339
stemNotes
340
stemTag
341
subgenus
342
subplot
343
subplotID
344
subplotX
345
subplotY
346
subspecies
347
tag
348
taxonConceptID
349
taxonID
350
taxonIsCanonical
351
taxonName
352
taxonNameOrEpithet
353
taxonNameWithMorphospecies
354
taxonObservationID
355
taxonOccurrenceID
356
taxonOccurrencePkey
357
taxonRank
358
taxonRemarks
359
taxonomicStatus
360
temperature_C
361
temperature_F
362
texture
363
threatened
364
type
365
typeStatus
366
variety
367
verbatimCoordinateSystem
368
verbatimCoordinates
369
verbatimDepth
370
verbatimElevation
371
verbatimElevation_m
372
verbatimEventDate
373
verbatimLatitude
374
verbatimLocality
375
verbatimLongitude
376
verbatimSRS
377
verbatimScientificName
378
verbatimTaxonName
379
verbatimTaxonRank
380
vernacularName
381
voucherType
382
waterBody
383
year
384
yearCollected
385
yearIdentified
inputs/input.Makefile
145 145

  
146 146
srcDict := map.csv
147 147

  
148
vocab := $(mappings)/VegCore.csv
148
vocab := $(mappings)/VegCore.vocab.csv
149
thesaurus := $(mappings)/VegCore.thesaurus.csv
149 150
coreMap := $(mappings)/VegCore-VegBIEN.csv
150
thesaurus := $(mappings)/Veg+-VegCore.csv
151 151

  
152 152
viaMaps := $(importTables:%=%/map.csv)
153 153

  
mappings/VegCore.thesaurus.csv
1
Veg+,VegCore
2
?DBH,"?diameterBreastHeight_m,diameterBreastHeight_cm,diameterBreastHeight_in"
3
?acidity,"?acidity_fraction,acidity_percent"
4
?area,"?plotArea_m2,plotArea_ha"
5
?basalDiam,"?basalDiameter_m,basalDiameter_cm,basalDiameter_in"
6
?basalDiameter,"?basalDiameter_m,basalDiameter_cm,basalDiameter_in"
7
?baseSaturation,"?baseSaturation_fraction,baseSaturation_percent"
8
?calcium,"?calcium_fraction,calcium_percent"
9
?carbon,"?carbon_fraction,carbon_percent"
10
?cationExchangeCapacity,"?cationExchangeCapacity_cmol_kg,cationExchangeCapacity_meq_100g"
11
?clay,"?clay_fraction,clay_percent"
12
?depth,verbatimDepth
13
?diameterBreastHeight,"?diameterBreastHeight_m,diameterBreastHeight_cm,diameterBreastHeight_in"
14
?diameterBreastHeightGentry,"?diameterBreastHeightGentry_m,diameterBreastHeightGentry_cm,diameterBreastHeightGentry_in"
15
?distErrCountry,"?distanceToCountry_m,distanceToCountry_km"
16
?distErrStateProvince,"?distanceToStateProvince_m,distanceToStateProvince_km"
17
?distanceToCountry,"?distanceToCountry_m,distanceToCountry_km"
18
?distanceToStateProvince,"?distanceToStateProvince_m,distanceToStateProvince_km"
19
?elevation,"?elevationInMeters,verbatimElevation,verbatimElevation_m"
20
?exchangeCapacity,"?cationExchangeCapacity_cmol_kg,cationExchangeCapacity_meq_100g"
21
?fieldNotes,"?organismNotes,eventRemarks"
22
?fieldNumber,"?recordNumber,authorEventCode"
23
?gentryDbh,"?diameterBreastHeightGentry_m,diameterBreastHeightGentry_cm,diameterBreastHeightGentry_in"
24
?globalUniqueIdentifier,"?occurrenceID,datasourceRecordID"
25
?height,"?height_m,height_ft"
26
?heightFirstBranch,"?heightFirstBranch_m,heightFirstBranch_ft"
27
?intercept,"?intercept_m,intercept_cm"
28
?magnesium,"?magnesium_fraction,magnesium_percent"
29
?maximumDepth,"?maximumDepthInMeters,maximumDepth_verbatim"
30
?maximumElevation,"?maximumElevationInMeters,maximumElevation_verbatim"
31
?minimumDepth,"?minimumDepthInMeters,minimumDepth_verbatim"
32
?minimumElevation,"?minimumElevationInMeters,minimumElevation_verbatim"
33
?nitrogen,"?nitrogen_fraction,nitrogen_percent"
34
?notes,"?organismNotes,locationRemarks"
35
?observationType,"?observationMeasure,observationGranularity"
36
?organic,"?organic_fraction,organic_percent"
37
?phosphorus,"?phosphorus_fraction,phosphorus_percent"
38
?plotArea,"?plotArea_m2,plotArea_ha"
39
?potassium,"?potassium_fraction,potassium_percent"
40
?precipitation,"?precipitation_m,precipitation_mm"
41
?realLatitude,PRIVATE
42
?realLongitude,PRIVATE
43
?sand,"?sand_fraction,sand_percent"
44
?silt,"?silt_fraction,silt_percent"
45
?sodium,"?sodium_fraction,sodium_percent"
46
?soilAcidity,"?acidity_fraction,acidity_percent"
47
?soilC,"?carbon_fraction,carbon_percent"
48
?soilCa,"?calcium_fraction,calcium_percent"
49
?soilCationCap,"?cationExchangeCapacity_cmol_kg,cationExchangeCapacity_meq_100g"
50
?soilClay,"?clay_fraction,clay_percent"
51
?soilNa,"?sodium_fraction,sodium_percent"
52
?soilOrganic,"?organic_fraction,organic_percent"
53
?soilSand,"?sand_fraction,sand_percent"
54
?soilSilt,"?silt_fraction,silt_percent"
55
?species,"?specificEpithet,speciesBinomial"
56
?stemDbh,"?diameterBreastHeight_m,diameterBreastHeight_cm,diameterBreastHeight_in"
57
?stemHeight,"?height_m,height_ft"
58
?temperature,"?temperature_C,temperature_F"
59
ID,datasourceRecordID
60
abund10cm,individualCount_10cm_or_more
61
abund1cm,individualCount_1cm_or_more
62
abund2_5cm,individualCount_2_5cm_or_more
63
accession,catalogNumber
64
accessionNumber,catalogNumber
65
accordingTo,nameAccordingTo
66
aggregateOccurrenceID,aggregateOrganismObservationID
67
aggregatorOrPrimary,referenceType
68
annotations,identificationQualifier
69
authorObsCode,authorEventCode
70
authorPlantCode,individualCode
71
authorPlantName,authorTaxonCode
72
authorPlotCode,locationName
73
boundingBox,footprintWKT
74
censusID,eventID
75
censusNo,censusNumber
76
cf_aff,identificationQualifier
77
collectedDate,dateCollected
78
collector,recordedBy
79
collectorNumber,recordNumber
80
communityConceptName,communityName
81
continentOcean,continent
82
coordinateSource_bien,coordinateSource
83
countryName,country
84
cultivatedBasis_bien,cultivatedBasis
85
cultivated_bien,cultivated
86
cv,cultivar
87
dataset,datasetName
88
datasourceName,datasource
89
dateLastModified,modified
90
dcterms_accessRights,accessRights
91
dcterms_bibliographicCitation,bibliographicCitation
92
dcterms_language,language
93
dcterms_modified,modified
94
dcterms_references,references
95
dcterms_rights,rights
96
dcterms_rightsHolder,rightsHolder
97
dcterms_type,type
98
descriptionOfSite,locality
99
detType,voucherType
100
familyScore,matchedFamilyFit_fraction
101
fieldNotes_DwC_curatorial,organismNotes
102
fieldNotes_DwC_terms,eventRemarks
103
fieldNumber_DwC_curatorial,recordNumber
104
fieldNumber_DwC_terms,authorEventCode
105
fm,forma
106
genusScore,matchedGenusFit_fraction
107
georeferenceProtocol_bien,georeferenceProtocol
108
globalUniqueIdentifier_DwC,occurrenceID
109
globalUniqueIdentifier_SpeciesLink,datasourceRecordID
110
habit,growthForm
111
higherPlantGroup_bien,higherPlantGroup
112
htFirstBranch_m,heightFirstBranch_m
113
identificationLabel,tag
114
identifiedDate,dateIdentified
115
individualOrganismObservationID,individualObservationID
116
individualOrganismObservationRelativeX,organismX_m
117
individualOrganismObservationRelativeY,organismY_m
118
interpretationType,identificationType
119
isBadLatLong,latLongDomainInvalid
120
isGeovalid,geovalid
121
isInCountry,latLongInCountry
122
isInCountyParish,latLongInCounty
123
isInStateProvince,latLongInStateProvince
124
isNewWorld_bien,isNewWorld
125
isValidLatLong,latLongDomainValid
126
julianDay,startDayOfYear
127
latitude,decimalLatitude
128
locationNarrative,locality
129
locationNumber,locationName
130
longitude,decimalLongitude
131
method,samplingProtocol
132
methodology,samplingProtocol
133
museumAccessionNumber,catalogNumber
134
notes_Madidi,locationRemarks
135
notes_SALVIAS,organismNotes
136
obsEndDate,endDate
137
obsStartDate,startDate
138
observationType_BIEN2,observationGranularity
139
observationType_SALVIAS,observationMeasure
140
overallScore,matchedTaxonFit_fraction
141
phenology,reproductiveCondition
142
plotCensusNumber,authorEventCode
143
plotID,locationID
144
plotMethodology,samplingProtocol
145
plotName,locationName
146
plotNote,locationRemarks
147
plotNotes,locationRemarks
148
plotRelativeX,subplotX
149
plotRelativeY,subplotY
150
plotUniqueIdentifierID,locationID
151
pottasium,"?potassium_fraction,potassium_percent"
152
precip_mm,precipitation_mm
153
preparation,preparations
154
preparationType,preparations
155
previousCatalogNumber,otherCatalogNumbers
156
projectTitle,projectName
157
quadratID,subplotID
158
quadratName,subplot
159
relatedCatalogItem,relatedResourceID
160
relationshipType,relationshipOfResource
161
remarks,organismNotes
162
scientificNameAuthor,scientificNameAuthorship
163
shapeOfSite,footprintWKT
164
soilConductivity,conductivity
165
soilTexture,texture
166
speciesInvID,taxonObservationID
167
speciesName,specificEpithet
168
species_DwC,specificEpithet
169
species_VegBank,speciesBinomial
170
specificEpithetScore,matchedSpeciesFit_fraction
171
ssp,subspecies
172
startX,subplotX
173
startY,subplotY
174
state,stateProvince
175
stemCanopyForm,canopyForm
176
stemCanopyPosition,canopyPosition
177
stemCode,authorStemCode
178
stemLianaInfestation,lianaInfestation
179
stemTag2,stemTag
180
subspeciesName,subspecies
181
tag2,tag
182
taxonFit,identificationQualifier
183
taxonIsAccepted,taxonIsCanonical
184
taxonNameUsageConceptID,taxonOccurrenceID
185
temp_C,temperature_C
186
timeOfDay,eventTime
187
traitName,measurementType
188
traitValue,measurementValue
189
unit,measurementUnit
190
var,variety
mappings/Makefile
9 9
# Paths
10 10
bin := ../bin
11 11
inputCoreMaps := VegCore-VegBIEN.csv VegX-VegCore.csv
12
vocab := VegCore.csv
13
thesaurus := Veg+-VegCore.csv
12
vocab := VegCore.vocab.csv
13
thesaurus := VegCore.thesaurus.csv
14 14

  
15 15
##### General targets
16 16

  
mappings/VegCore.vocab.csv
1
VegCore
2
OMIT
3
PRIVATE
4
UNUSED
5
acceptedClass
6
acceptedCountry
7
acceptedCounty
8
acceptedCultivar
9
acceptedDecimalLatitude
10
acceptedDecimalLongitude
11
acceptedFamily
12
acceptedForma
13
acceptedGenus
14
acceptedIdentificationQualifier
15
acceptedInfraspecificEpithet
16
acceptedKingdom
17
acceptedNameUsage
18
acceptedNameUsageID
19
acceptedOrder
20
acceptedPhylum
21
acceptedScientificName
22
acceptedScientificNameAuthorship
23
acceptedScientificNameID
24
acceptedSpecificEpithet
25
acceptedStateProvince
26
acceptedSubspecies
27
acceptedTaxonName
28
acceptedTaxonRank
29
acceptedVariety
30
accessRights
31
acidity_fraction
32
acidity_percent
33
aggregateOrganismObservationID
34
associatedMedia
35
associatedOccurrences
36
associatedReferences
37
associatedSequences
38
associatedTaxa
39
authorEventCode
40
authorStemCode
41
authorTaxonCode
42
barcode
43
basalDiameter_cm
44
basalDiameter_in
45
basalDiameter_m
46
baseSaturation_fraction
47
baseSaturation_percent
48
basisOfRecord
49
bed
50
behavior
51
bibliographicCitation
52
calcium_fraction
53
calcium_percent
54
canopyForm
55
canopyPosition
56
carbon_fraction
57
carbon_percent
58
catalogNumber
59
cationExchangeCapacity_cmol_kg
60
cationExchangeCapacity_meq_100g
61
censusNumber
62
class
63
clay_fraction
64
clay_percent
65
collectionCode
66
collectionID
67
communityID
68
communityName
69
conductivity
70
continent
71
coordinatePrecision_deg
72
coordinateSource
73
coordinateUncertaintyInMeters
74
country
75
countryCode
76
county
77
coverPercent
78
cultivar
79
cultivated
80
cultivatedBasis
81
dataGeneralizations
82
datasetID
83
datasetName
84
datasetRecordID
85
datasource
86
datasourceRecordID
87
dateCollected
88
dateIdentified
89
day
90
dayCollected
91
dayIdentified
92
decimalLatitude
93
decimalLongitude
94
diameterBreastHeightGentry_cm
95
diameterBreastHeightGentry_in
96
diameterBreastHeightGentry_m
97
diameterBreastHeight_cm
98
diameterBreastHeight_in
99
diameterBreastHeight_m
100
disposition
101
distanceAboveSurfaceInMeters
102
distanceToCountry_km
103
distanceToCountry_m
104
distanceToStateProvince_km
105
distanceToStateProvince_m
106
dynamicProperties
107
earliestAgeOrLowestStage
108
earliestEonOrLowestEonothem
109
earliestEpochOrLowestSeries
110
earliestEraOrLowestErathem
111
earliestPeriodOrLowestSystem
112
elevationInMeters
113
endDate
114
endDayOfYear
115
establishmentMeans
116
eventDate
117
eventID
118
eventRemarks
119
eventTime
120
family
121
footprintSRS
122
footprintSpatialFit
123
footprintWKT
124
forma
125
formation
126
genus
127
geodeticDatum
128
geologicalContextID
129
georeferenceProtocol
130
georeferenceRemarks
131
georeferenceSources
132
georeferenceVerificationStatus
133
georeferencedBy
134
georeferencedDate
135
geovalid
136
globalUniqueIdentifier_SpeciesLink
137
group
138
growthForm
139
habitat
140
heightFirstBranch_ft
141
heightFirstBranch_m
142
height_ft
143
height_m
144
higherClassification
145
higherGeography
146
higherGeographyID
147
higherPlantGroup
148
highestBiostratigraphicZone
149
identificationID
150
identificationQualifier
151
identificationReferences
152
identificationRemarks
153
identificationType
154
identificationVerificationStatus
155
identifiedBy
156
individualCode
157
individualCount
158
individualCount_10cm_or_more
159
individualCount_1cm_or_more
160
individualCount_2_5cm_or_more
161
individualID
162
individualObservationID
163
informationWithheld
164
infraspecificEpithet
165
institutionCode
166
institutionID
167
intercept_cm
168
intercept_m
169
isHerbarium
170
isNewWorld
171
island
172
islandGroup
173
kingdom
174
landform
175
language
176
latLongDomainInvalid
177
latLongDomainValid
178
latLongInCountry
179
latLongInCounty
180
latLongInStateProvince
181
latestAgeOrHighestStage
182
latestEonOrHighestEonothem
183
latestEpochOrHighestSeries
184
latestEraOrHighestErathem
185
latestPeriodOrHighestSystem
186
latitude_DMS
187
lianaInfestation
188
lifeStage
189
lithostratigraphicTerms
190
locality
191
locationAccordingTo
192
locationID
193
locationName
194
locationRemarks
195
longitude_DMS
196
lowestBiostratigraphicZone
197
magnesium_fraction
198
magnesium_percent
199
matchedFamilyFit_fraction
200
matchedGenusFit_fraction
201
matchedSpeciesFit_fraction
202
matchedTaxonFit_fraction
203
maxSlopeAspect
204
maxSlopeGradient
205
maximumDepthInMeters
206
maximumDepth_verbatim
207
maximumDistanceAboveSurfaceInMeters
208
maximumElevationInMeters
209
maximumElevation_verbatim
210
measurementAccuracy
211
measurementDeterminedBy
212
measurementDeterminedDate
213
measurementID
214
measurementMethod
215
measurementRemarks
216
measurementType
217
measurementUnit
218
measurementValue
219
member
220
minSlopeAspect
221
minSlopeGradient
222
minimumDepthInMeters
223
minimumDepth_verbatim
224
minimumDistanceAboveSurfaceInMeters
225
minimumElevationInMeters
226
minimumElevation_verbatim
227
modified
228
month
229
monthCollected
230
monthIdentified
231
morphoname
232
morphospecies
233
municipality
234
nameAccordingTo
235
nameAccordingToID
236
namePublishedIn
237
namePublishedInID
238
namePublishedInYear
239
nitrogen_fraction
240
nitrogen_percent
241
nomenclaturalCode
242
nomenclaturalStatus
243
observationGranularity
244
observationMeasure
245
occurrenceID
246
occurrenceRemarks
247
occurrenceStatus
248
oldGrowth
249
order
250
organic_fraction
251
organic_percent
252
organismNotes
253
organismX_m
254
organismY_m
255
originalClass
256
originalCultivar
257
originalFamily
258
originalForma
259
originalGenus
260
originalIdentificationQualifier
261
originalInfraspecificEpithet
262
originalKingdom
263
originalNameUsage
264
originalNameUsageID
265
originalOrder
266
originalPhylum
267
originalScientificName
268
originalScientificNameAuthorship
269
originalSpecificEpithet
270
originalSubspecies
271
originalTaxonName
272
originalTaxonRank
273
originalVariety
274
otherCatalogNumbers
275
ownerInstitutionCode
276
parentLocationID
277
parentNameUsage
278
parentNameUsageID
279
parentPlotName
280
parentScientificNameID
281
parentTaxonConceptID
282
parentTaxonID
283
ph
284
phosphorus_fraction
285
phosphorus_percent
286
phylum
287
plotArea_ha
288
plotArea_m2
289
pointRadiusSpatialFit
290
potassium_fraction
291
potassium_percent
292
precipitation_m
293
precipitation_mm
294
preparations
295
previousIdentifications
296
projectEndDate
297
projectID
298
projectName
299
projectStartDate
300
recordNumber
301
recordedBy
302
recordedBy_givenName
303
recordedBy_middleName
304
recordedBy_surName
305
referenceType
306
references
307
relatedResourceID
308
relationshipAccordingTo
309
relationshipEstablishedDate
310
relationshipOfResource
311
relationshipRemarks
312
reproductiveCondition
313
resourceID
314
resourceRelationshipID
315
rights
316
rightsHolder
317
samplingEffort
318
samplingProtocol
319
samplingProtocolID
320
sand_fraction
321
sand_percent
322
scientificName
323
scientificNameAuthorship
324
scientificNameID
325
sex
326
silt_fraction
327
silt_percent
328
slopeAspect
329
slopeGradient
330
sodium_fraction
331
sodium_percent
332
speciesBinomial
333
specificEpithet
334
startDate
335
startDayOfYear
336
stateProvince
337
stemCount
338
stemID
339
stemNotes
340
stemTag
341
subgenus
342
subplot
343
subplotID
344
subplotX
345
subplotY
346
subspecies
347
tag
348
taxonConceptID
349
taxonID
350
taxonIsCanonical
351
taxonName
352
taxonNameOrEpithet
353
taxonNameWithMorphospecies
354
taxonObservationID
355
taxonOccurrenceID
356
taxonOccurrencePkey
357
taxonRank
358
taxonRemarks
359
taxonomicStatus
360
temperature_C
361
temperature_F
362
texture
363
threatened
364
type
365
typeStatus
366
variety
367
verbatimCoordinateSystem
368
verbatimCoordinates
369
verbatimDepth
370
verbatimElevation
371
verbatimElevation_m
372
verbatimEventDate
373
verbatimLatitude
374
verbatimLocality
375
verbatimLongitude
376
verbatimSRS
377
verbatimScientificName
378
verbatimTaxonName
379
verbatimTaxonRank
380
vernacularName
381
voucherType
382
waterBody
383
year
384
yearCollected
385
yearIdentified

Also available in: Unified diff