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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7326 almost 12 years Aaron Marcuse-Kubitza backups/Makefile: %.md5/test: Added comment to ...
  bin 7524 almost 12 years Aaron Marcuse-Kubitza Added sort_ci to sort a spreadsheet, ignoring l...
  config 7390 almost 12 years Aaron Marcuse-Kubitza config/: Set svn:ignore to exclude *password files
  inputs 7527 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Regenerated from wiki. Br...
  lib 7397 almost 12 years Aaron Marcuse-Kubitza xml_dom.py: replace_with_text(): Added support ...
  mappings 7527 almost 12 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Regenerated from wiki. Br...
  schemas 7466 almost 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Added _mm_to_m()
  to_do 7355 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.2013.xls: Updated with changes d...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 11.9 KB 7423 almost 12 years Aaron Marcuse-Kubitza root Makefile: misc-Linux: Added command to cop...
README.TXT 17.8 KB 7513 almost 12 years Aaron Marcuse-Kubitza README.TXT: Maintenance: VegCore data dictionar...
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
7527 02/12/2013 01:08 PM Aaron Marcuse-Kubitza

mappings/VegCore.htm: Regenerated from wiki. Brad's new DwC ID terms spreadsheet has now been added, and a number of the ID terms clarified, disambiguated, and recategorized. In particular, institutionCode has now been split into the custodialInstitutions and collectingInstitution, to differentiate between which institution has the specimen vs. stamped the specimen. This distinction is important because the catalogNumber, stamped on the specimen, is only unique within the collectingInstitution. Most datasources don't unambiguously specify which institution their institutionCode is referring to, so it has been assumed to be custodialInstitutions unless a data dictionary says otherwise (as is the case for UNCC). In addition, a MatchedTaxonDetermination table has been added with the *_matched fields from TNRS.
7526 02/12/2013 12:15 PM Aaron Marcuse-Kubitza

inputs/CVS/observation_/map.csv: baseSaturation: Resolved ambiguous term
7525 02/12/2013 12:09 PM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.vocab.csv: Ignore leading ? when sorting so that ambiguous terms sort alphabetically with other terms. This prevents terms from moving from their previous location when they become ambiguous.
7524 02/12/2013 12:07 PM Aaron Marcuse-Kubitza

Added sort_ci to sort a spreadsheet, ignoring leading punctuation
7523 02/12/2013 12:05 PM Aaron Marcuse-Kubitza

mappings/VegCore.vocab.csv: Changed line endings to \r\n in preparation for having a Python script run on it (which changes the line endings)
7522 02/12/2013 11:47 AM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.vocab.csv: Added back ambiguous terms, so that the vocabulary contains all terms defined by VegCore, regardless of whether they are ambiguous or unambiguous terms
7521 02/12/2013 11:44 AM Aaron Marcuse-Kubitza

mappings/Makefile: VegCore.vocab.csv: Added back synonyms, so that the vocabulary contains all terms defined by VegCore, regardless of whether they are synonyms or primary terms. This also prevents VegCore.vocab.csv from losing entries when terms are renamed, which made it difficult to verify that no terms were lost when refactoring.
7520 02/12/2013 05:50 AM Aaron Marcuse-Kubitza

inputs/MO/Specimen/postprocess.sql: Remove frameshifted rows by detecting InstitutionCodes without any letters
7519 02/12/2013 04:59 AM Aaron Marcuse-Kubitza

inputs/ARIZ/Specimen/map.csv: CollectorNumber/FieldNumber: Use /_first to map these identical fields to the same location
7518 02/12/2013 04:54 AM Aaron Marcuse-Kubitza

inputs/ARIZ/Specimen/map.csv: Fixed bug where the column names for InstitutionCode and CollectionCode were reversed in the source data

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