Project

General

Profile

« Previous | Next » 

Revision 7553

inputs/ARIZ/: Removed previous data now that it has been refreshed

View differences:

inputs/ARIZ/Specimen/new_terms.csv
1
CatalogNumberNumeric,catalogNumber,/_alt/1,
2
TimeCollected,eventTime,,
3
VerbatimCollectingDate,dateCollected,/_alt/0,
4
OriginalCoordinateSystem,verbatimSRS,,
5
GeorefMethod,georeferenceProtocol,,
6
LatLongComments,georeferenceRemarks,,
7
IdentificationModifier,identificationQualifier,,
8
AgeClass,lifeStage,,
9
GenBankNum,associatedSequences,"/_label[label=""GenBank""]/value",
10
RelatedCatalogedItems,relatedResourceID,/_alt/2,Used only when OtherCatalogNumbers is NULL
inputs/ARIZ/Specimen/unmapped_terms.csv
1
modified
2
basisOfRecord
3
eventTime
4
day
5
higherGeography
6
islandGroup
7
island
8
verbatimSRS
9
georeferenceProtocol
10
georeferenceRemarks
11
verbatimDepth
12
typeStatus
13
preparations
14
lifeStage
15
associatedSequences
16
relatedResourceID
17
relatedResourceID
inputs/ARIZ/Specimen/map.csv
1
ARIZ,VegCore,Filter,Comments
2
GlobalUniqueIdentifier,occurrenceID,,
3
DateLastModified,modified,,
4
BasisOfRecord,basisOfRecord,,
5
InstitutionCode,collection,,Column names are reversed
6
CollectionCode,custodialInstitutions,,Column names are reversed
7
CatalogNumber,catalogNumber,/_alt/2,Don't overwrite CatalogNumberNumeric
8
CatalogNumberNumeric,catalogNumber,/_alt/1,
9
Collector,recordedBy,,
10
CollectorNumber,collectorNumber,/_first/1,
11
FieldNumber,collectorNumber,/_first/2,Identical to CollectorNumber
12
YearCollected,yearCollected,,
13
MonthCollected,monthCollected,,
14
DayCollected,dayCollected,,
15
TimeCollected,eventTime,,
16
VerbatimCollectingDate,dateCollected,/_alt/0,
17
FieldNotes,organismNotes,,
18
JulianDay,day,,
19
HigherGeography,higherGeography,,
20
ContinentOcean,continent,,
21
IslandGroup,islandGroup,,
22
Island,island,,
23
Country,country,,
24
StateProvince,stateProvince,,
25
County,county,,
26
Locality,locality,,
27
DecimalLatitude,decimalLatitude,,
28
DecimalLongitude,decimalLongitude,,
29
HorizontalDatum,UNUSED,,
30
OriginalCoordinateSystem,verbatimSRS,,
31
VerbatimLatitude,UNUSED,,
32
VerbatimLongitude,UNUSED,,
33
GeorefMethod,georeferenceProtocol,,
34
CoordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,
35
LatLongComments,georeferenceRemarks,,
36
BoundingBox,footprintWKT,,
37
MinimumElevationInMeters,minimumElevationInMeters,,"Contains some verbatim values, including ranges and units"
38
MaximumElevationInMeters,maximumElevationInMeters,,"Contains some verbatim values, including ranges and units"
39
VerbatimElevation,UNUSED,,
40
MinimumDepthInMeters,minimumDepthInMeters,,
41
MaximumDepthInMeters,maximumDepthInMeters,,
42
VerbatimDepth,verbatimDepth,,
43
ScientificName,taxonName,,
44
Kingdom,kingdom,,
45
Phylum,phylum,,
46
Class,class,,
47
Order,order,,
48
Family,family,,
49
Genus,genus,,
50
Species,specificEpithet,,
51
Subspecies,subspecies,,
52
ScientificNameAuthor,scientificName,,Contains the binomial in addition to the authority
53
IdentifiedBy,identifiedBy,,
54
IdentificationModifier,identificationQualifier,,
55
YearIdentified,yearIdentified,,
56
MonthIdentified,monthIdentified,,
57
DayIdentified,dayIdentified,,
58
TypeStatus,typeStatus,,
59
Sex,sex,,
60
Preparations,preparations,,
61
Tissues,UNUSED,,
62
IndividualCount,individualCount,,
63
AgeClass,lifeStage,,
64
GenBankNum,associatedSequences,"/_label[label=""GenBank""]/value",
65
OtherCatalogNumbers,relatedResourceID,/_alt/1,
66
RelatedCatalogedItems,relatedResourceID,/_alt/2,Used only when OtherCatalogNumbers is NULL
67
Remarks,taxonRemarks,,
inputs/ARIZ/Specimen/test.xml.ref
1
Put template:
2
<VegBIEN>
3
    <_setDefault id="-1">
4
        <source_id><source><shortname>ARIZ</shortname></source></source_id>
5
        <path>
6
            <_simplifyPath>
7
                <next>parent_id</next>
8
                <path>
9
                    <location>
10
                        <authorlocationcode>
11
                            <_alt>
12
                                <1>$GlobalUniqueIdentifier</1>
13
                                <2>
14
                                    <_join>
15
                                        <1>$CollectionCode</1>
16
                                        <2>$InstitutionCode</2>
17
                                        <3>
18
                                            <_alt>
19
                                                <1>$CatalogNumberNumeric</1>
20
                                                <2>$CatalogNumber</2>
21
                                            </_alt>
22
                                        </3>
23
                                    </_join>
24
                                </2>
25
                            </_alt>
26
                        </authorlocationcode>
27
                        <elevation_m>
28
                            <_avg>
29
                                <max>$MaximumElevationInMeters</max>
30
                                <min>$MinimumElevationInMeters</min>
31
                            </_avg>
32
                        </elevation_m>
33
                        <iscultivated><_locationnarrative_is_cultivated><locationnarrative>$Locality</locationnarrative></_locationnarrative_is_cultivated></iscultivated>
34
                        <locationevent>
35
                            <taxonoccurrence>
36
                                <aggregateoccurrence>
37
                                    <collectiondate>
38
                                        <_alt>
39
                                            <1>$VerbatimCollectingDate</1>
40
                                            <2>
41
                                                <_date>
42
                                                    <day>
43
                                                        <_nullIf>
44
                                                            <null>0</null>
45
                                                            <type>float</type>
46
                                                            <value>$DayCollected</value>
47
                                                        </_nullIf>
48
                                                    </day>
49
                                                    <month>
50
                                                        <_nullIf>
51
                                                            <null>0</null>
52
                                                            <type>float</type>
53
                                                            <value>$MonthCollected</value>
54
                                                        </_nullIf>
55
                                                    </month>
56
                                                    <year>
57
                                                        <_nullIf>
58
                                                            <null>0</null>
59
                                                            <type>float</type>
60
                                                            <value>$YearCollected</value>
61
                                                        </_nullIf>
62
                                                    </year>
63
                                                </_date>
64
                                            </2>
65
                                        </_alt>
66
                                    </collectiondate>
67
                                    <count>$IndividualCount</count>
68
                                    <notes>$FieldNotes</notes>
69
                                    <plantobservation>
70
                                        <authorplantcode>$CollectorNumber</authorplantcode>
71
                                        <definedvalue fkey="tablerecord_id">
72
                                            <userdefined_id>
73
                                                <userdefined>
74
                                                    <tablename>plantobservation</tablename>
75
                                                    <userdefinedname>sex</userdefinedname>
76
                                                </userdefined>
77
                                            </userdefined_id>
78
                                            <definedvalue>$Sex</definedvalue>
79
                                        </definedvalue>
80
                                        <specimenreplicate>
81
                                            <catalognumber_dwc>
82
                                                <_alt>
83
                                                    <1>$CatalogNumberNumeric</1>
84
                                                    <2>$CatalogNumber</2>
85
                                                </_alt>
86
                                            </catalognumber_dwc>
87
                                            <collectioncode_dwc>$InstitutionCode</collectioncode_dwc>
88
                                            <collectionnumber>$CollectorNumber</collectionnumber>
89
                                            <institution_id>
90
                                                <sourcelist>
91
                                                    <name>$CollectionCode</name>
92
                                                    <sourcename>
93
                                                        <name>
94
                                                            <_split>
95
                                                                <separator>[,;] *</separator>
96
                                                                <value>$CollectionCode</value>
97
                                                            </_split>
98
                                                        </name>
99
                                                    </sourcename>
100
                                                </sourcelist>
101
                                            </institution_id>
102
                                            <sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode>
103
                                        </specimenreplicate>
104
                                    </plantobservation>
105
                                </aggregateoccurrence>
106
                                <collector_id><party><fullname>$Collector</fullname></party></collector_id>
107
                                <sourceaccessioncode>$GlobalUniqueIdentifier</sourceaccessioncode>
108
                                <taxondetermination>
109
                                    <party_id><party><fullname>$IdentifiedBy</fullname></party></party_id>
110
                                    <taxonverbatim_id>
111
                                        <taxonverbatim>
112
                                            <taxonlabel_id>
113
                                                <taxonlabel>
114
                                                    <parent_id>
115
                                                        <taxonlabel>
116
                                                            <parent_id>
117
                                                                <taxonlabel>
118
                                                                    <rank>cultivar</rank>
119
                                                                    <parent_id>
120
                                                                        <taxonlabel>
121
                                                                            <rank>forma</rank>
122
                                                                            <parent_id>
123
                                                                                <taxonlabel>
124
                                                                                    <rank>variety</rank>
125
                                                                                    <parent_id>
126
                                                                                        <taxonlabel>
127
                                                                                            <rank>subspecies</rank>
128
                                                                                            <taxonepithet>$Subspecies</taxonepithet>
129
                                                                                            <parent_id>
130
                                                                                                <taxonlabel>
131
                                                                                                    <rank>species</rank>
132
                                                                                                    <taxonepithet>$Species</taxonepithet>
133
                                                                                                    <parent_id>
134
                                                                                                        <taxonlabel>
135
                                                                                                            <rank>genus</rank>
136
                                                                                                            <taxonepithet>$Genus</taxonepithet>
137
                                                                                                            <parent_id>
138
                                                                                                                <taxonlabel>
139
                                                                                                                    <rank>family</rank>
140
                                                                                                                    <taxonepithet>$Family</taxonepithet>
141
                                                                                                                    <parent_id>
142
                                                                                                                        <taxonlabel>
143
                                                                                                                            <rank>order</rank>
144
                                                                                                                            <taxonepithet>$Order</taxonepithet>
145
                                                                                                                            <parent_id>
146
                                                                                                                                <taxonlabel>
147
                                                                                                                                    <rank>class</rank>
148
                                                                                                                                    <taxonepithet>$Class</taxonepithet>
149
                                                                                                                                    <parent_id>
150
                                                                                                                                        <taxonlabel>
151
                                                                                                                                            <rank>phylum</rank>
152
                                                                                                                                            <taxonepithet>$Phylum</taxonepithet>
153
                                                                                                                                            <parent_id>
154
                                                                                                                                                <taxonlabel>
155
                                                                                                                                                    <rank>kingdom</rank>
156
                                                                                                                                                    <taxonepithet>$Kingdom</taxonepithet>
157
                                                                                                                                                </taxonlabel>
158
                                                                                                                                            </parent_id>
159
                                                                                                                                        </taxonlabel>
160
                                                                                                                                    </parent_id>
161
                                                                                                                                </taxonlabel>
162
                                                                                                                            </parent_id>
163
                                                                                                                        </taxonlabel>
164
                                                                                                                    </parent_id>
165
                                                                                                                </taxonlabel>
166
                                                                                                            </parent_id>
167
                                                                                                        </taxonlabel>
168
                                                                                                    </parent_id>
169
                                                                                                </taxonlabel>
170
                                                                                            </parent_id>
171
                                                                                        </taxonlabel>
172
                                                                                    </parent_id>
173
                                                                                </taxonlabel>
174
                                                                            </parent_id>
175
                                                                        </taxonlabel>
176
                                                                    </parent_id>
177
                                                                </taxonlabel>
178
                                                            </parent_id>
179
                                                        </taxonlabel>
180
                                                    </parent_id>
181
                                                    <taxonomicname>
182
                                                        <_merge_prefix>
183
                                                            <prefix><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></prefix>
184
                                                            <value>
185
                                                                <_alt>
186
                                                                    <1>$ScientificNameAuthor</1>
187
                                                                    <2>
188
                                                                        <_alt>
189
                                                                            <1>$ScientificName</1>
190
                                                                            <2>
191
                                                                                <_join_words>
192
                                                                                    <2>$Genus</2>
193
                                                                                    <3>$Species</3>
194
                                                                                    <4>$Subspecies</4>
195
                                                                                </_join_words>
196
                                                                            </2>
197
                                                                        </_alt>
198
                                                                    </2>
199
                                                                </_alt>
200
                                                            </value>
201
                                                        </_merge_prefix>
202
                                                    </taxonomicname>
203
                                                </taxonlabel>
204
                                            </taxonlabel_id>
205
                                            <family>$Family</family>
206
                                            <genus>$Genus</genus>
207
                                            <specific_epithet>$Species</specific_epithet>
208
                                            <taxonname>$ScientificName</taxonname>
209
                                            <taxonomicname>$ScientificNameAuthor</taxonomicname>
210
                                        </taxonverbatim>
211
                                    </taxonverbatim_id>
212
                                    <determinationdate>
213
                                        <_date>
214
                                            <day>
215
                                                <_nullIf>
216
                                                    <null>0</null>
217
                                                    <type>float</type>
218
                                                    <value>$DayIdentified</value>
219
                                                </_nullIf>
220
                                            </day>
221
                                            <month>
222
                                                <_nullIf>
223
                                                    <null>0</null>
224
                                                    <type>float</type>
225
                                                    <value>$MonthIdentified</value>
226
                                                </_nullIf>
227
                                            </month>
228
                                            <year>
229
                                                <_nullIf>
230
                                                    <null>0</null>
231
                                                    <type>float</type>
232
                                                    <value>$YearIdentified</value>
233
                                                </_nullIf>
234
                                            </year>
235
                                        </_date>
236
                                    </determinationdate>
237
                                    <notes>$Remarks</notes>
238
                                    <taxonfit>$IdentificationModifier</taxonfit>
239
                                </taxondetermination>
240
                            </taxonoccurrence>
241
                            <waterdepth_m>
242
                                <_avg>
243
                                    <max>$MaximumDepthInMeters</max>
244
                                    <min>$MinimumDepthInMeters</min>
245
                                </_avg>
246
                            </waterdepth_m>
247
                        </locationevent>
248
                        <locationnarrative>$Locality</locationnarrative>
249
                        <locationplace>
250
                            <place_id>
251
                                <place>
252
                                    <coordinates_id>
253
                                        <coordinates>
254
                                            <coordsaccuracy_m><_noCV><value>$CoordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m>
255
                                            <footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc>
256
                                            <latitude_deg>
257
                                                <_nullIf>
258
                                                    <null>0</null>
259
                                                    <type>float</type>
260
                                                    <value>$DecimalLatitude</value>
261
                                                </_nullIf>
262
                                            </latitude_deg>
263
                                            <longitude_deg>
264
                                                <_nullIf>
265
                                                    <null>0</null>
266
                                                    <type>float</type>
267
                                                    <value>$DecimalLongitude</value>
268
                                                </_nullIf>
269
                                            </longitude_deg>
270
                                        </coordinates>
271
                                    </coordinates_id>
272
                                    <continent>$ContinentOcean</continent>
273
                                    <country>$Country</country>
274
                                    <county>$County</county>
275
                                    <matched_place_id>
276
                                        <place>
277
                                            <source_id><source><shortname>geoscrub</shortname></source></source_id>
278
                                            <coordinates_id>
279
                                                <coordinates>
280
                                                    <source_id><source><shortname>geoscrub</shortname></source></source_id>
281
                                                    <latitude_deg>
282
                                                        <_nullIf>
283
                                                            <null>0</null>
284
                                                            <type>float</type>
285
                                                            <value>$DecimalLatitude</value>
286
                                                        </_nullIf>
287
                                                    </latitude_deg>
288
                                                    <longitude_deg>
289
                                                        <_nullIf>
290
                                                            <null>0</null>
291
                                                            <type>float</type>
292
                                                            <value>$DecimalLongitude</value>
293
                                                        </_nullIf>
294
                                                    </longitude_deg>
295
                                                </coordinates>
296
                                            </coordinates_id>
297
                                            <country>$Country</country>
298
                                            <county>$County</county>
299
                                            <stateprovince>$StateProvince</stateprovince>
300
                                        </place>
301
                                    </matched_place_id>
302
                                    <stateprovince>$StateProvince</stateprovince>
303
                                </place>
304
                            </place_id>
305
                        </locationplace>
306
                    </location>
307
                </path>
308
            </_simplifyPath>
309
        </path>
310
    </_setDefault>
311
</VegBIEN>
312
Inserted 42 new rows into database
inputs/ARIZ/Specimen/VegBIEN.csv
1
ARIZ,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
2
GlobalUniqueIdentifier,"/_if[@name=""if specimen""]/cond/_exists",
3
CatalogNumberNumeric,"/_if[@name=""if specimen""]/cond/_exists/_alt/1",
4
CatalogNumber,"/_if[@name=""if specimen""]/cond/_exists/_alt/2",Don't overwrite CatalogNumberNumeric
5
CollectionCode,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",Column names are reversed
6
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1",
7
CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists/_alt/1",
8
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists/_alt/2",Don't overwrite CatalogNumberNumeric
9
GlobalUniqueIdentifier,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
10
CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists/_alt/1",
11
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists/_alt/2",Don't overwrite CatalogNumberNumeric
12
CollectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",Column names are reversed
13
InstitutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",Column names are reversed
14
CatalogNumberNumeric,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/1",
15
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
16
MaximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max,"Contains some verbatim values, including ranges and units"
17
MinimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,"Contains some verbatim values, including ranges and units"
18
GlobalUniqueIdentifier,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
19
CollectorNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/1",
20
FieldNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/2",Identical to CollectorNumber
21
Locality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,
22
DayIdentified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
23
MonthIdentified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
24
YearIdentified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
25
Remarks,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/notes",
26
IdentificationModifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
27
VerbatimCollectingDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/0,
28
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
29
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
30
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
31
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
32
FieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes,
33
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_first/1,
34
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_first/2,Identical to CollectorNumber
35
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
36
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/1",
37
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else/_alt/2",Don't overwrite CatalogNumberNumeric
38
InstitutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Column names are reversed; Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
39
CollectorNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else/_first/1",
40
FieldNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else/_first/2",Identical to CollectorNumber
41
GlobalUniqueIdentifier,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
42
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists/_alt/1",
43
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists/_alt/2",Don't overwrite CatalogNumberNumeric
44
CollectionCode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",Column names are reversed
45
CollectionCode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",Column names are reversed
46
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
47
CollectorNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3/_first/1",
48
FieldNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3/_first/2",Identical to CollectorNumber
49
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",Contains the binomial in addition to the authority
50
ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/3",
51
Collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
52
GlobalUniqueIdentifier,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
53
CollectorNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/1",
54
FieldNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists/_first/2",Identical to CollectorNumber
55
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
56
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
57
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
58
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
59
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
60
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
61
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
62
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
63
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
64
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
65
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
66
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,Contains the binomial in addition to the authority
67
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,
68
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2,
69
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
70
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4,
71
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
72
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
73
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
74
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
75
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,Contains the binomial in addition to the authority
76
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
77
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
78
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
79
Remarks,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes,
80
IdentificationModifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,
81
CatalogNumberNumeric,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/1",
82
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/2",Don't overwrite CatalogNumberNumeric
83
CollectorNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_first/1",
84
FieldNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_first/2",Identical to CollectorNumber
85
MaximumDepthInMeters,/location/locationevent/waterdepth_m/_avg/max,
86
MinimumDepthInMeters,/location/locationevent/waterdepth_m/_avg/min,
87
Locality,/location/locationnarrative/_merge/1,
88
CoordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
89
BoundingBox,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
90
DecimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
91
DecimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
92
ContinentOcean,/location/locationplace/*_id/place/continent,
93
Country,/location/locationplace/*_id/place/country,
94
County,/location/locationplace/*_id/place/county,
95
DecimalLatitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
96
DecimalLongitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
97
Country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
98
County,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
99
StateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
100
StateProvince,/location/locationplace/*_id/place/stateprovince,
101
AgeClass,,** No join mapping for lifeStage ** 
102
BasisOfRecord,,** No join mapping for basisOfRecord ** 
103
DateLastModified,,** No join mapping for modified ** 
104
GenBankNum,,"** No join mapping for associatedSequences/_label[label=""GenBank""]/value ** "
105
GeorefMethod,,** No join mapping for georeferenceProtocol ** 
106
HigherGeography,,** No join mapping for higherGeography ** 
107
HorizontalDatum,,** No non-empty join mapping for UNUSED ** 
108
Island,,** No join mapping for island ** 
109
IslandGroup,,** No join mapping for islandGroup ** 
110
JulianDay,,** No join mapping for day ** 
111
LatLongComments,,** No join mapping for georeferenceRemarks ** 
112
OriginalCoordinateSystem,,** No join mapping for verbatimSRS ** 
113
OtherCatalogNumbers,,** No join mapping for relatedResourceID/_alt/1 ** 
114
Preparations,,** No join mapping for preparations ** 
115
RelatedCatalogedItems,,** No join mapping for relatedResourceID/_alt/2 ** Used only when OtherCatalogNumbers is NULL
116
TimeCollected,,** No join mapping for eventTime ** 
117
Tissues,,** No non-empty join mapping for UNUSED ** 
118
TypeStatus,,** No join mapping for typeStatus ** 
119
VerbatimDepth,,** No join mapping for verbatimDepth ** 
120
VerbatimElevation,,** No non-empty join mapping for UNUSED ** 
121
VerbatimLatitude,,** No non-empty join mapping for UNUSED ** 
122
VerbatimLongitude,,** No non-empty join mapping for UNUSED ** 
inputs/ARIZ/import_order.txt
1 1
Source
2
Specimen
3 2
omoccurrences

Also available in: Unified diff