Revision 7657
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/TEX/Source/map.csv | ||
|---|---|---|
| 1 |
TEX,VegCore,Filter,Comments |
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| 2 |
:herbarium,sourceType,, |
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| 3 |
:specimen,observationGranularity,, |
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| inputs/TEX/Source/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
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| 2 |
<VegBIEN> |
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| 3 |
<_setDefault id="-1"> |
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| 4 |
<source_id><source><shortname>TEX</shortname></source></source_id> |
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| 5 |
<path> |
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| 6 |
<_simplifyPath> |
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| 7 |
<next>parent_id</next> |
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| 8 |
<path> |
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| 9 |
<source> |
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| 10 |
<shortname>TEX</shortname> |
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| 11 |
<observationtype>specimen</observationtype> |
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| 12 |
<sourcetype>herbarium</sourcetype> |
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| 13 |
</source> |
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| 14 |
</path> |
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| 15 |
</_simplifyPath> |
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| 16 |
</path> |
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| 17 |
</_setDefault> |
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| 18 |
</VegBIEN> |
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| 19 |
Inserted 0 new rows into database |
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| inputs/TEX/Source/VegBIEN.csv | ||
|---|---|---|
| 1 |
TEX,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
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| 2 |
:specimen,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/observationtype", |
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| 3 |
:herbarium,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/sourcetype", |
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| 4 |
:specimen,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/cond/_eq:[right=plot]/left", |
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| inputs/TEX/Specimen/map.csv | ||
|---|---|---|
| 1 |
TEX,VegCore,Filter,Comments |
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| 2 |
HERBARIUM,collection,, |
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| 3 |
ACCESSION NO.,accessionNumber,, |
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| 4 |
COLLECTOR NAME(S),recordedBy,, |
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| 5 |
COLLECTOR NUMBER,collectorNumber,, |
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| 6 |
COLL. DATE (EXACT),dateCollected,/_alt/1, |
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| 7 |
COLL. DATE (GENERAL),dateCollected,/_alt/2, |
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| 8 |
ORIGIN,establishmentMeans,, |
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| 9 |
PHENOLOGY,reproductiveCondition,, |
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| 10 |
FAMILY,family,, |
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| 11 |
GENUS,genus,, |
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| 12 |
SPECIES,specificEpithet,, |
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| 13 |
AUTHORITY,scientificNameAuthorship,, |
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| 14 |
INFRA RANK,infraspecificRank,, |
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| 15 |
INFRA NAME,infraspecificEpithet,, |
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| 16 |
INFRA AUTHORITY,*INFRA AUTHORITY,, |
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| 17 |
DETERMINED BY,identifiedBy,, |
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| 18 |
LAT DEGREES,decimalLatitude,, |
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| 19 |
LAT MINUTES,*LAT MINUTES,, |
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| 20 |
LAT SECONDS,*LAT SECONDS,, |
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| 21 |
LAT NS,*LAT NS,, |
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| 22 |
LONG DEGREES,decimalLongitude,, |
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| 23 |
LONG MINUTES,*LONG MINUTES,, |
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| 24 |
LONG SECONDS,*LONG SECONDS,, |
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| 25 |
LONG EW,*LONG EW,, |
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| 26 |
SOURCE OF LATLONG,*SOURCE OF LATLONG,, |
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| 27 |
STATE,stateProvince,, |
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| 28 |
COUNTY,county,, |
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| 29 |
LOCATION,locality,, |
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| 30 |
ELEVATION,verbatimElevation,, |
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| 31 |
ECOLOGICAL INFORMATION,habitat,, |
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| 32 |
UTM,*UTM,, |
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| 33 |
SPECIMEN NOTES,organismNotes,, |
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| 34 |
DET NOTES,identificationRemarks,, |
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| 35 |
DATA ENTRY BY,*DATA ENTRY BY,, |
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| 36 |
DATA ENTRY DATE,*DATA ENTRY DATE,, |
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| 37 |
DATA EDITED DATE,modified,, |
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| inputs/TEX/Specimen/TEX-LL_Texas_latlong_Final.tab.url | ||
|---|---|---|
| 1 |
https://dl.dropbox.com/s/wtndcc84gti0j37/TEX-LL%20Texas%20latlong%20Final.tab |
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| inputs/TEX/Specimen/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
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| 2 |
<VegBIEN> |
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| 3 |
<_setDefault id="-1"> |
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| 4 |
<source_id><source><shortname>TEX</shortname></source></source_id> |
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| 5 |
<path> |
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| 6 |
<_simplifyPath> |
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| 7 |
<next>parent_id</next> |
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| 8 |
<path> |
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| 9 |
<location> |
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| 10 |
<authorlocationcode> |
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| 11 |
<_join> |
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| 12 |
<2>$HERBARIUM</2> |
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| 13 |
<3>$ACCESSION NO.</3> |
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| 14 |
</_join> |
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| 15 |
</authorlocationcode> |
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| 16 |
<elevation_m> |
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| 17 |
<_units> |
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| 18 |
<to>m</to> |
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| 19 |
<to></to> |
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| 20 |
<value>$ELEVATION</value> |
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| 21 |
</_units> |
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| 22 |
</elevation_m> |
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| 23 |
<iscultivated> |
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| 24 |
<_locationnarrative_is_cultivated> |
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| 25 |
<locationnarrative> |
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| 26 |
<_join> |
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| 27 |
<1>$LOCATION</1> |
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| 28 |
<3>$ECOLOGICAL INFORMATION</3> |
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| 29 |
</_join> |
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| 30 |
</locationnarrative> |
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| 31 |
</_locationnarrative_is_cultivated> |
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| 32 |
</iscultivated> |
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| 33 |
<locationevent> |
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| 34 |
<taxonoccurrence> |
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| 35 |
<aggregateoccurrence> |
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| 36 |
<collectiondate> |
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| 37 |
<_alt> |
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| 38 |
<1>$COLL. DATE (EXACT)</1> |
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| 39 |
<2>$COLL. DATE (GENERAL)</2> |
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| 40 |
</_alt> |
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| 41 |
</collectiondate> |
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| 42 |
<notes>$SPECIMEN NOTES</notes> |
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| 43 |
<plantobservation> |
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| 44 |
<authorplantcode>$COLLECTOR NUMBER</authorplantcode> |
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| 45 |
<reproductivecondition>$PHENOLOGY</reproductivecondition> |
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| 46 |
<specimenreplicate> |
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| 47 |
<catalognumber_dwc>$ACCESSION NO.</catalognumber_dwc> |
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| 48 |
<collectioncode_dwc>$HERBARIUM</collectioncode_dwc> |
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| 49 |
<collectionnumber>$COLLECTOR NUMBER</collectionnumber> |
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| 50 |
</specimenreplicate> |
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| 51 |
</plantobservation> |
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| 52 |
</aggregateoccurrence> |
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| 53 |
<collector_id><party><fullname>$COLLECTOR NAME(S)</fullname></party></collector_id> |
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| 54 |
<iscultivated> |
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| 55 |
<_map> |
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| 56 |
<cultivated>t</cultivated> |
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| 57 |
<wild>f</wild> |
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| 58 |
<*></*> |
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| 59 |
<value>$ORIGIN</value> |
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| 60 |
</_map> |
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| 61 |
</iscultivated> |
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| 62 |
<isnative> |
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| 63 |
<_map> |
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| 64 |
<native>t</native> |
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| 65 |
<exotic>f</exotic> |
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| 66 |
<*></*> |
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| 67 |
<value>$ORIGIN</value> |
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| 68 |
</_map> |
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| 69 |
</isnative> |
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| 70 |
<taxondetermination> |
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| 71 |
<party_id><party><fullname>$DETERMINED BY</fullname></party></party_id> |
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| 72 |
<taxonverbatim_id> |
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| 73 |
<taxonverbatim> |
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| 74 |
<taxonlabel_id> |
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| 75 |
<taxonlabel> |
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| 76 |
<parent_id> |
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| 77 |
<taxonlabel> |
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| 78 |
<parent_id> |
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| 79 |
<taxonlabel> |
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| 80 |
<rank>cultivar</rank> |
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| 81 |
<parent_id> |
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| 82 |
<taxonlabel> |
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| 83 |
<rank>forma</rank> |
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| 84 |
<parent_id> |
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| 85 |
<taxonlabel> |
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| 86 |
<rank>variety</rank> |
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| 87 |
<parent_id> |
|
| 88 |
<taxonlabel> |
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| 89 |
<rank>subspecies</rank> |
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| 90 |
<parent_id> |
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| 91 |
<taxonlabel> |
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| 92 |
<rank>species</rank> |
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| 93 |
<taxonepithet>$SPECIES</taxonepithet> |
|
| 94 |
<parent_id> |
|
| 95 |
<taxonlabel> |
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| 96 |
<rank>genus</rank> |
|
| 97 |
<taxonepithet>$GENUS</taxonepithet> |
|
| 98 |
<parent_id> |
|
| 99 |
<taxonlabel> |
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| 100 |
<rank>family</rank> |
|
| 101 |
<taxonepithet>$FAMILY</taxonepithet> |
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| 102 |
</taxonlabel> |
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| 103 |
</parent_id> |
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| 104 |
</taxonlabel> |
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| 105 |
</parent_id> |
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| 106 |
</taxonlabel> |
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| 107 |
</parent_id> |
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| 108 |
</taxonlabel> |
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| 109 |
</parent_id> |
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| 110 |
</taxonlabel> |
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| 111 |
</parent_id> |
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| 112 |
</taxonlabel> |
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| 113 |
</parent_id> |
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| 114 |
</taxonlabel> |
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| 115 |
</parent_id> |
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| 116 |
<taxonepithet>$INFRA NAME</taxonepithet> |
|
| 117 |
</taxonlabel> |
|
| 118 |
</parent_id> |
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| 119 |
<taxonomicname> |
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| 120 |
<_merge_prefix> |
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| 121 |
<prefix><_taxon_family_require_std><family>$FAMILY</family></_taxon_family_require_std></prefix> |
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| 122 |
<value> |
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| 123 |
<_join_words> |
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| 124 |
<1> |
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| 125 |
<_join_words> |
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| 126 |
<2>$GENUS</2> |
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| 127 |
<3>$SPECIES</3> |
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| 128 |
<5>$INFRA NAME</5> |
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| 129 |
</_join_words> |
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| 130 |
</1> |
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| 131 |
<2>$AUTHORITY</2> |
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| 132 |
</_join_words> |
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| 133 |
</value> |
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| 134 |
</_merge_prefix> |
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| 135 |
</taxonomicname> |
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| 136 |
</taxonlabel> |
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| 137 |
</taxonlabel_id> |
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| 138 |
<author>$AUTHORITY</author> |
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| 139 |
<family>$FAMILY</family> |
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| 140 |
<genus>$GENUS</genus> |
|
| 141 |
<specific_epithet>$SPECIES</specific_epithet> |
|
| 142 |
</taxonverbatim> |
|
| 143 |
</taxonverbatim_id> |
|
| 144 |
</taxondetermination> |
|
| 145 |
</taxonoccurrence> |
|
| 146 |
</locationevent> |
|
| 147 |
<locationnarrative> |
|
| 148 |
<_merge> |
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| 149 |
<1>$LOCATION</1> |
|
| 150 |
<3> |
|
| 151 |
<_label> |
|
| 152 |
<label>habitat</label> |
|
| 153 |
<value>$ECOLOGICAL INFORMATION</value> |
|
| 154 |
</_label> |
|
| 155 |
</3> |
|
| 156 |
</_merge> |
|
| 157 |
</locationnarrative> |
|
| 158 |
<locationplace> |
|
| 159 |
<place_id> |
|
| 160 |
<place> |
|
| 161 |
<coordinates_id> |
|
| 162 |
<coordinates> |
|
| 163 |
<latitude_deg> |
|
| 164 |
<_nullIf> |
|
| 165 |
<null>0</null> |
|
| 166 |
<type>float</type> |
|
| 167 |
<value>$LAT DEGREES</value> |
|
| 168 |
</_nullIf> |
|
| 169 |
</latitude_deg> |
|
| 170 |
<longitude_deg> |
|
| 171 |
<_nullIf> |
|
| 172 |
<null>0</null> |
|
| 173 |
<type>float</type> |
|
| 174 |
<value>$LONG DEGREES</value> |
|
| 175 |
</_nullIf> |
|
| 176 |
</longitude_deg> |
|
| 177 |
</coordinates> |
|
| 178 |
</coordinates_id> |
|
| 179 |
<county>$COUNTY</county> |
|
| 180 |
<matched_place_id> |
|
| 181 |
<place> |
|
| 182 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 183 |
<coordinates_id> |
|
| 184 |
<coordinates> |
|
| 185 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 186 |
<latitude_deg> |
|
| 187 |
<_nullIf> |
|
| 188 |
<null>0</null> |
|
| 189 |
<type>float</type> |
|
| 190 |
<value>$LAT DEGREES</value> |
|
| 191 |
</_nullIf> |
|
| 192 |
</latitude_deg> |
|
| 193 |
<longitude_deg> |
|
| 194 |
<_nullIf> |
|
| 195 |
<null>0</null> |
|
| 196 |
<type>float</type> |
|
| 197 |
<value>$LONG DEGREES</value> |
|
| 198 |
</_nullIf> |
|
| 199 |
</longitude_deg> |
|
| 200 |
</coordinates> |
|
| 201 |
</coordinates_id> |
|
| 202 |
<county>$COUNTY</county> |
|
| 203 |
<stateprovince>$STATE</stateprovince> |
|
| 204 |
</place> |
|
| 205 |
</matched_place_id> |
|
| 206 |
<stateprovince>$STATE</stateprovince> |
|
| 207 |
</place> |
|
| 208 |
</place_id> |
|
| 209 |
</locationplace> |
|
| 210 |
<verbatimelevation>$ELEVATION</verbatimelevation> |
|
| 211 |
</location> |
|
| 212 |
</path> |
|
| 213 |
</_simplifyPath> |
|
| 214 |
</path> |
|
| 215 |
</_setDefault> |
|
| 216 |
</VegBIEN> |
|
| 217 |
Inserted 38 new rows into database |
|
| inputs/TEX/Specimen/VegBIEN.csv | ||
|---|---|---|
| 1 |
TEX,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
|
| 2 |
ACCESSION NO.,"/_if[@name=""if specimen""]/cond/_exists", |
|
| 3 |
ACCESSION NO.,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists", |
|
| 4 |
ACCESSION NO.,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
|
| 5 |
HERBARIUM,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1", |
|
| 6 |
ACCESSION NO.,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
|
| 7 |
ELEVATION,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value", |
|
| 8 |
COLLECTOR NUMBER,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 9 |
LOCATION,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1, |
|
| 10 |
ECOLOGICAL INFORMATION,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3, |
|
| 11 |
COLL. DATE (EXACT),/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/1, |
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| 12 |
COLL. DATE (GENERAL),/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/2, |
|
| 13 |
SPECIMEN NOTES,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
|
| 14 |
COLLECTOR NUMBER,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
|
| 15 |
PHENOLOGY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition, |
|
| 16 |
ACCESSION NO.,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
| 17 |
HERBARIUM,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
|
| 18 |
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else", |
|
| 19 |
ACCESSION NO.,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
|
| 20 |
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
|
| 21 |
COLLECTOR NAME(S),/location/locationevent/taxonoccurrence/collector_id/party/fullname, |
|
| 22 |
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 23 |
ORIGIN,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value", |
|
| 24 |
ORIGIN,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
|
| 25 |
DETERMINED BY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
|
| 26 |
SPECIES,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 27 |
GENUS,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 28 |
FAMILY,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 29 |
INFRA NAME,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet, |
|
| 30 |
FAMILY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
|
| 31 |
GENUS,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 32 |
SPECIES,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 33 |
INFRA NAME,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 34 |
INFRA NAME,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 35 |
AUTHORITY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2, |
|
| 36 |
AUTHORITY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
|
| 37 |
FAMILY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 38 |
GENUS,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 39 |
SPECIES,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
|
| 40 |
ACCESSION NO.,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
| 41 |
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then", |
|
| 42 |
LOCATION,/location/locationnarrative/_merge/1, |
|
| 43 |
ECOLOGICAL INFORMATION,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
|
| 44 |
LAT DEGREES,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 45 |
LONG DEGREES,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 46 |
COUNTY,/location/locationplace/*_id/place/county, |
|
| 47 |
LAT DEGREES,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
|
| 48 |
LONG DEGREES,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
|
| 49 |
COUNTY,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2, |
|
| 50 |
STATE,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2, |
|
| 51 |
STATE,/location/locationplace/*_id/place/stateprovince, |
|
| 52 |
ELEVATION,/location/verbatimelevation, |
|
| 53 |
DATA EDITED DATE,,** No join mapping for modified ** |
|
| 54 |
DATA ENTRY BY,,** No join mapping for *DATA ENTRY BY ** |
|
| 55 |
DATA ENTRY DATE,,** No join mapping for *DATA ENTRY DATE ** |
|
| 56 |
DET NOTES,,** No join mapping for identificationRemarks ** |
|
| 57 |
INFRA AUTHORITY,,** No join mapping for *INFRA AUTHORITY ** |
|
| 58 |
INFRA RANK,,** No join mapping for infraspecificRank ** |
|
| 59 |
LAT MINUTES,,** No join mapping for *LAT MINUTES ** |
|
| 60 |
LAT NS,,** No join mapping for *LAT NS ** |
|
| 61 |
LAT SECONDS,,** No join mapping for *LAT SECONDS ** |
|
| 62 |
LONG EW,,** No join mapping for *LONG EW ** |
|
| 63 |
LONG MINUTES,,** No join mapping for *LONG MINUTES ** |
|
| 64 |
LONG SECONDS,,** No join mapping for *LONG SECONDS ** |
|
| 65 |
SOURCE OF LATLONG,,** No join mapping for *SOURCE OF LATLONG ** |
|
| 66 |
UTM,,** No join mapping for *UTM ** |
|
| inputs/TEX/Specimen/TEX-LL_Texas_latlong_Final.tab.md5 | ||
|---|---|---|
| 1 |
60a66d9a2bec79ec94e4918ac7c39c44 |
|
| inputs/TEX/Specimen/unmapped_terms.csv | ||
|---|---|---|
| 1 |
infraspecificRank |
|
| 2 |
*INFRA AUTHORITY |
|
| 3 |
*LAT MINUTES |
|
| 4 |
*LAT SECONDS |
|
| 5 |
*LAT NS |
|
| 6 |
*LONG MINUTES |
|
| 7 |
*LONG SECONDS |
|
| 8 |
*LONG EW |
|
| 9 |
*SOURCE OF LATLONG |
|
| 10 |
*UTM |
|
| 11 |
identificationRemarks |
|
| 12 |
*DATA ENTRY BY |
|
| 13 |
*DATA ENTRY DATE |
|
| 14 |
modified |
|
| inputs/TEX/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
HERBARIUM,collection,, |
|
| 2 |
ACCESSION NO.,accessionNumber,, |
|
| 3 |
COLLECTOR NAME(S),recordedBy,, |
|
| 4 |
COLL. DATE (EXACT),dateCollected,/_alt/1, |
|
| 5 |
COLL. DATE (GENERAL),dateCollected,/_alt/2, |
|
| 6 |
ORIGIN,establishmentMeans,, |
|
| 7 |
AUTHORITY,scientificNameAuthorship,, |
|
| 8 |
INFRA RANK,infraspecificRank,, |
|
| 9 |
INFRA NAME,infraspecificEpithet,, |
|
| 10 |
DETERMINED BY,identifiedBy,, |
|
| 11 |
LAT DEGREES,decimalLatitude,, |
|
| 12 |
LONG DEGREES,decimalLongitude,, |
|
| 13 |
LOCATION,locality,, |
|
| 14 |
ECOLOGICAL INFORMATION,habitat,, |
|
| 15 |
SPECIMEN NOTES,organismNotes,, |
|
| 16 |
DET NOTES,identificationRemarks,, |
|
| 17 |
DATA EDITED DATE,modified,, |
|
| inputs/TEX/Specimen2/map.csv | ||
|---|---|---|
| 1 |
TEX,VegCore,Filter,Comments |
|
| 2 |
HERBARIUM,collection,, |
|
| 3 |
BARCODE,barcode,, |
|
| 4 |
FAMILY,family,, |
|
| 5 |
GENUS,genus,, |
|
| 6 |
SPECIES,specificEpithet,, |
|
| 7 |
SPECIES AUTHORITY,scientificNameAuthorship,, |
|
| 8 |
SUBSPECIES,subspecies,, |
|
| 9 |
SUBSPECIES AUTHOR,*SUBSPECIES AUTHOR,, |
|
| 10 |
VARIETY,variety,, |
|
| 11 |
VARIETY AUTHOR,*VARIETY AUTHOR,, |
|
| 12 |
STATE,stateProvince,, |
|
| 13 |
COUNTY,county,, |
|
| 14 |
LOCALITY,locality,, |
|
| 15 |
VEGETATION,habitat,, |
|
| 16 |
PLANT DATA,organismNotes,, |
|
| 17 |
ELEVATION,verbatimElevation,, |
|
| 18 |
LATITUDE,latitude_DMS,, |
|
| 19 |
LONGITUDE,longitude_DMS,, |
|
| 20 |
EXACT DATE,dateCollected,/_alt/1, |
|
| 21 |
END DATE,UNUSED,, |
|
| 22 |
GENERAL DATE,dateCollected,/_alt/2, |
|
| 23 |
COLLECTOR 1 FIRST NAME,recordedBy,/_join/1/_join_words/1, |
|
| 24 |
COLLECTOR 1 LAST NAME,recordedBy,/_join/1/_join_words/2, |
|
| 25 |
COLLECTOR NUMBER,collectorNumber,, |
|
| 26 |
COLLECTOR 2 FIRST NAME,recordedBy,/_join/2/_join_words/1, |
|
| 27 |
COLLECTOR 2 LAST NAME,recordedBy,/_join/2/_join_words/2, |
|
| 28 |
COLLECTOR 3 FIRST NAME,recordedBy,/_join/3/_join_words/1, |
|
| 29 |
COLLECTOR 3 LAST NAME,recordedBy,/_join/3/_join_words/2, |
|
| 30 |
COLLECTOR 4 FIRST NAME,recordedBy,/_join/4/_join_words/1, |
|
| 31 |
COLLECTOR 4 LAST NAME,recordedBy,/_join/4/_join_words/2, |
|
| 32 |
COLLECTOR 5 FIRST NAME,recordedBy,/_join/5/_join_words/1, |
|
| 33 |
COLLECTOR 5 LAST NAME,recordedBy,/_join/5/_join_words/2, |
|
| 34 |
LATLONG SOURCE,*LATLONG SOURCE,, |
|
| 35 |
LATLONG DATUM,*LATLONG DATUM,, |
|
| 36 |
DATABASED BY,*DATABASED BY,, |
|
| 37 |
MISC NOTES,occurrenceRemarks,, |
|
| 38 |
UTM,*UTM,, |
|
| 39 |
ORIGIN,establishmentMeans,, |
|
| 40 |
PHENOLOGY,reproductiveCondition,, |
|
| 41 |
DETERMINER FIRST NAME,identifiedBy,, |
|
| 42 |
DETERMINER LAST NAME,identifiedBy,, |
|
| 43 |
DET DATE,dateIdentified,, |
|
| 44 |
DETERMINER INSTITUTION,*DETERMINER INSTITUTION,, |
|
| 45 |
DET NOTES,identificationRemarks,, |
|
| inputs/TEX/Specimen2/VegBIEN.csv | ||
|---|---|---|
| 1 |
TEX,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
|
| 2 |
HERBARIUM,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1", |
|
| 3 |
ELEVATION,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value", |
|
| 4 |
COLLECTOR NUMBER,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 5 |
LOCALITY,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1, |
|
| 6 |
VEGETATION,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3, |
|
| 7 |
DET DATE,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value", |
|
| 8 |
EXACT DATE,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/1, |
|
| 9 |
GENERAL DATE,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/2, |
|
| 10 |
PLANT DATA,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
|
| 11 |
COLLECTOR NUMBER,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
|
| 12 |
PHENOLOGY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition, |
|
| 13 |
HERBARIUM,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
|
| 14 |
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else", |
|
| 15 |
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
|
| 16 |
COLLECTOR 1 FIRST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/1/_join_words/1, |
|
| 17 |
COLLECTOR 1 LAST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/1/_join_words/2, |
|
| 18 |
COLLECTOR 2 FIRST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/2/_join_words/1, |
|
| 19 |
COLLECTOR 2 LAST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/2/_join_words/2, |
|
| 20 |
COLLECTOR 3 FIRST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/3/_join_words/1, |
|
| 21 |
COLLECTOR 3 LAST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/3/_join_words/2, |
|
| 22 |
COLLECTOR 4 FIRST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/4/_join_words/1, |
|
| 23 |
COLLECTOR 4 LAST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/4/_join_words/2, |
|
| 24 |
COLLECTOR 5 FIRST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/5/_join_words/1, |
|
| 25 |
COLLECTOR 5 LAST NAME,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/5/_join_words/2, |
|
| 26 |
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 27 |
ORIGIN,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value", |
|
| 28 |
ORIGIN,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
|
| 29 |
DETERMINER FIRST NAME,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
|
| 30 |
DETERMINER LAST NAME,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
|
| 31 |
VARIETY,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=variety]/taxonepithet", |
|
| 32 |
SUBSPECIES,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
|
| 33 |
SPECIES,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 34 |
GENUS,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 35 |
FAMILY,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 36 |
FAMILY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
|
| 37 |
GENUS,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 38 |
SPECIES,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 39 |
SUBSPECIES,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 40 |
VARIETY,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/6/_join_words:[1=""var. ""]/2", |
|
| 41 |
SPECIES AUTHORITY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2, |
|
| 42 |
SPECIES AUTHORITY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
|
| 43 |
FAMILY,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 44 |
GENUS,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 45 |
SPECIES,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
|
| 46 |
DET DATE,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
|
| 47 |
COLLECTOR NUMBER,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then", |
|
| 48 |
LOCALITY,/location/locationnarrative/_merge/1, |
|
| 49 |
VEGETATION,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
|
| 50 |
LATITUDE,/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude, |
|
| 51 |
LONGITUDE,/location/locationplace/*_id/place/*_id/coordinates/verbatimlongitude, |
|
| 52 |
COUNTY,/location/locationplace/*_id/place/county, |
|
| 53 |
COUNTY,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2, |
|
| 54 |
STATE,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2, |
|
| 55 |
STATE,/location/locationplace/*_id/place/stateprovince, |
|
| 56 |
ELEVATION,/location/verbatimelevation, |
|
| 57 |
BARCODE,,** No join mapping for barcode ** |
|
| 58 |
DATABASED BY,,** No join mapping for *DATABASED BY ** |
|
| 59 |
DET NOTES,,** No join mapping for identificationRemarks ** |
|
| 60 |
DETERMINER INSTITUTION,,** No join mapping for *DETERMINER INSTITUTION ** |
|
| 61 |
END DATE,,** No non-empty join mapping for UNUSED ** |
|
| 62 |
LATLONG DATUM,,** No join mapping for *LATLONG DATUM ** |
|
| 63 |
LATLONG SOURCE,,** No join mapping for *LATLONG SOURCE ** |
|
| 64 |
MISC NOTES,,** No join mapping for occurrenceRemarks ** |
|
| 65 |
SUBSPECIES AUTHOR,,** No join mapping for *SUBSPECIES AUTHOR ** |
|
| 66 |
UTM,,** No join mapping for *UTM ** |
|
| 67 |
VARIETY AUTHOR,,** No join mapping for *VARIETY AUTHOR ** |
|
| inputs/TEX/Specimen2/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
|
| 2 |
<VegBIEN> |
|
| 3 |
<_setDefault id="-1"> |
|
| 4 |
<source_id><source><shortname>TEX</shortname></source></source_id> |
|
| 5 |
<path> |
|
| 6 |
<_simplifyPath> |
|
| 7 |
<next>parent_id</next> |
|
| 8 |
<path> |
|
| 9 |
<location> |
|
| 10 |
<elevation_m> |
|
| 11 |
<_units> |
|
| 12 |
<to>m</to> |
|
| 13 |
<to></to> |
|
| 14 |
<value>$ELEVATION</value> |
|
| 15 |
</_units> |
|
| 16 |
</elevation_m> |
|
| 17 |
<iscultivated> |
|
| 18 |
<_locationnarrative_is_cultivated> |
|
| 19 |
<locationnarrative> |
|
| 20 |
<_join> |
|
| 21 |
<1>$LOCALITY</1> |
|
| 22 |
<3>$VEGETATION</3> |
|
| 23 |
</_join> |
|
| 24 |
</locationnarrative> |
|
| 25 |
</_locationnarrative_is_cultivated> |
|
| 26 |
</iscultivated> |
|
| 27 |
<locationevent> |
|
| 28 |
<taxonoccurrence> |
|
| 29 |
<aggregateoccurrence> |
|
| 30 |
<collectiondate> |
|
| 31 |
<_alt> |
|
| 32 |
<1>$EXACT DATE</1> |
|
| 33 |
<2>$GENERAL DATE</2> |
|
| 34 |
</_alt> |
|
| 35 |
</collectiondate> |
|
| 36 |
<notes>$PLANT DATA</notes> |
|
| 37 |
<plantobservation> |
|
| 38 |
<authorplantcode>$COLLECTOR NUMBER</authorplantcode> |
|
| 39 |
<reproductivecondition>$PHENOLOGY</reproductivecondition> |
|
| 40 |
<specimenreplicate> |
|
| 41 |
<collectioncode_dwc>$HERBARIUM</collectioncode_dwc> |
|
| 42 |
<collectionnumber>$COLLECTOR NUMBER</collectionnumber> |
|
| 43 |
</specimenreplicate> |
|
| 44 |
</plantobservation> |
|
| 45 |
</aggregateoccurrence> |
|
| 46 |
<collector_id> |
|
| 47 |
<party> |
|
| 48 |
<fullname> |
|
| 49 |
<_join> |
|
| 50 |
<1> |
|
| 51 |
<_join_words> |
|
| 52 |
<1>$COLLECTOR 1 FIRST NAME</1> |
|
| 53 |
<2>$COLLECTOR 1 LAST NAME</2> |
|
| 54 |
</_join_words> |
|
| 55 |
</1> |
|
| 56 |
<2> |
|
| 57 |
<_join_words> |
|
| 58 |
<1>$COLLECTOR 2 FIRST NAME</1> |
|
| 59 |
<2>$COLLECTOR 2 LAST NAME</2> |
|
| 60 |
</_join_words> |
|
| 61 |
</2> |
|
| 62 |
<3> |
|
| 63 |
<_join_words> |
|
| 64 |
<1>$COLLECTOR 3 FIRST NAME</1> |
|
| 65 |
<2>$COLLECTOR 3 LAST NAME</2> |
|
| 66 |
</_join_words> |
|
| 67 |
</3> |
|
| 68 |
<4> |
|
| 69 |
<_join_words> |
|
| 70 |
<1>$COLLECTOR 4 FIRST NAME</1> |
|
| 71 |
<2>$COLLECTOR 4 LAST NAME</2> |
|
| 72 |
</_join_words> |
|
| 73 |
</4> |
|
| 74 |
<5> |
|
| 75 |
<_join_words> |
|
| 76 |
<1>$COLLECTOR 5 FIRST NAME</1> |
|
| 77 |
<2>$COLLECTOR 5 LAST NAME</2> |
|
| 78 |
</_join_words> |
|
| 79 |
</5> |
|
| 80 |
</_join> |
|
| 81 |
</fullname> |
|
| 82 |
</party> |
|
| 83 |
</collector_id> |
|
| 84 |
<iscultivated> |
|
| 85 |
<_map> |
|
| 86 |
<cultivated>t</cultivated> |
|
| 87 |
<wild>f</wild> |
|
| 88 |
<*></*> |
|
| 89 |
<value>$ORIGIN</value> |
|
| 90 |
</_map> |
|
| 91 |
</iscultivated> |
|
| 92 |
<isnative> |
|
| 93 |
<_map> |
|
| 94 |
<native>t</native> |
|
| 95 |
<exotic>f</exotic> |
|
| 96 |
<*></*> |
|
| 97 |
<value>$ORIGIN</value> |
|
| 98 |
</_map> |
|
| 99 |
</isnative> |
|
| 100 |
<taxondetermination> |
|
| 101 |
<party_id> |
|
| 102 |
<party> |
|
| 103 |
<fullname> |
|
| 104 |
<_alt> |
|
| 105 |
<0>$DETERMINER FIRST NAME</0> |
|
| 106 |
<1>$DETERMINER LAST NAME</1> |
|
| 107 |
</_alt> |
|
| 108 |
</fullname> |
|
| 109 |
</party> |
|
| 110 |
</party_id> |
|
| 111 |
<taxonverbatim_id> |
|
| 112 |
<taxonverbatim> |
|
| 113 |
<taxonlabel_id> |
|
| 114 |
<taxonlabel> |
|
| 115 |
<parent_id> |
|
| 116 |
<taxonlabel> |
|
| 117 |
<parent_id> |
|
| 118 |
<taxonlabel> |
|
| 119 |
<rank>cultivar</rank> |
|
| 120 |
<parent_id> |
|
| 121 |
<taxonlabel> |
|
| 122 |
<rank>forma</rank> |
|
| 123 |
<parent_id> |
|
| 124 |
<taxonlabel> |
|
| 125 |
<rank>variety</rank> |
|
| 126 |
<taxonepithet>$VARIETY</taxonepithet> |
|
| 127 |
<parent_id> |
|
| 128 |
<taxonlabel> |
|
| 129 |
<rank>subspecies</rank> |
|
| 130 |
<taxonepithet>$SUBSPECIES</taxonepithet> |
|
| 131 |
<parent_id> |
|
| 132 |
<taxonlabel> |
|
| 133 |
<rank>species</rank> |
|
| 134 |
<taxonepithet>$SPECIES</taxonepithet> |
|
| 135 |
<parent_id> |
|
| 136 |
<taxonlabel> |
|
| 137 |
<rank>genus</rank> |
|
| 138 |
<taxonepithet>$GENUS</taxonepithet> |
|
| 139 |
<parent_id> |
|
| 140 |
<taxonlabel> |
|
| 141 |
<rank>family</rank> |
|
| 142 |
<taxonepithet>$FAMILY</taxonepithet> |
|
| 143 |
</taxonlabel> |
|
| 144 |
</parent_id> |
|
| 145 |
</taxonlabel> |
|
| 146 |
</parent_id> |
|
| 147 |
</taxonlabel> |
|
| 148 |
</parent_id> |
|
| 149 |
</taxonlabel> |
|
| 150 |
</parent_id> |
|
| 151 |
</taxonlabel> |
|
| 152 |
</parent_id> |
|
| 153 |
</taxonlabel> |
|
| 154 |
</parent_id> |
|
| 155 |
</taxonlabel> |
|
| 156 |
</parent_id> |
|
| 157 |
</taxonlabel> |
|
| 158 |
</parent_id> |
|
| 159 |
<taxonomicname> |
|
| 160 |
<_merge_prefix> |
|
| 161 |
<prefix><_taxon_family_require_std><family>$FAMILY</family></_taxon_family_require_std></prefix> |
|
| 162 |
<value> |
|
| 163 |
<_join_words> |
|
| 164 |
<1> |
|
| 165 |
<_join_words> |
|
| 166 |
<2>$GENUS</2> |
|
| 167 |
<3>$SPECIES</3> |
|
| 168 |
<4>$SUBSPECIES</4> |
|
| 169 |
<6> |
|
| 170 |
<_join_words> |
|
| 171 |
<1>var. </1> |
|
| 172 |
<2>$VARIETY</2> |
|
| 173 |
</_join_words> |
|
| 174 |
</6> |
|
| 175 |
</_join_words> |
|
| 176 |
</1> |
|
| 177 |
<2>$SPECIES AUTHORITY</2> |
|
| 178 |
</_join_words> |
|
| 179 |
</value> |
|
| 180 |
</_merge_prefix> |
|
| 181 |
</taxonomicname> |
|
| 182 |
</taxonlabel> |
|
| 183 |
</taxonlabel_id> |
|
| 184 |
<author>$SPECIES AUTHORITY</author> |
|
| 185 |
<family>$FAMILY</family> |
|
| 186 |
<genus>$GENUS</genus> |
|
| 187 |
<specific_epithet>$SPECIES</specific_epithet> |
|
| 188 |
</taxonverbatim> |
|
| 189 |
</taxonverbatim_id> |
|
| 190 |
<determinationdate><_dateRangeStart><value>$DET DATE</value></_dateRangeStart></determinationdate> |
|
| 191 |
</taxondetermination> |
|
| 192 |
</taxonoccurrence> |
|
| 193 |
</locationevent> |
|
| 194 |
<locationnarrative> |
|
| 195 |
<_merge> |
|
| 196 |
<1>$LOCALITY</1> |
|
| 197 |
<3> |
|
| 198 |
<_label> |
|
| 199 |
<label>habitat</label> |
|
| 200 |
<value>$VEGETATION</value> |
|
| 201 |
</_label> |
|
| 202 |
</3> |
|
| 203 |
</_merge> |
|
| 204 |
</locationnarrative> |
|
| 205 |
<locationplace> |
|
| 206 |
<place_id> |
|
| 207 |
<place> |
|
| 208 |
<coordinates_id> |
|
| 209 |
<coordinates> |
|
| 210 |
<verbatimlatitude>$LATITUDE</verbatimlatitude> |
|
| 211 |
<verbatimlongitude>$LONGITUDE</verbatimlongitude> |
|
| 212 |
</coordinates> |
|
| 213 |
</coordinates_id> |
|
| 214 |
<county>$COUNTY</county> |
|
| 215 |
<matched_place_id> |
|
| 216 |
<place> |
|
| 217 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 218 |
<county>$COUNTY</county> |
|
| 219 |
<stateprovince>$STATE</stateprovince> |
|
| 220 |
</place> |
|
| 221 |
</matched_place_id> |
|
| 222 |
<stateprovince>$STATE</stateprovince> |
|
| 223 |
</place> |
|
| 224 |
</place_id> |
|
| 225 |
</locationplace> |
|
| 226 |
<verbatimelevation>$ELEVATION</verbatimelevation> |
|
| 227 |
</location> |
|
| 228 |
</path> |
|
| 229 |
</_simplifyPath> |
|
| 230 |
</path> |
|
| 231 |
</_setDefault> |
|
| 232 |
</VegBIEN> |
|
| 233 |
Inserted 11 new rows into database |
|
| inputs/TEX/Specimen2/new_terms.csv | ||
|---|---|---|
| 1 |
HERBARIUM,collection,, |
|
| 2 |
SPECIES AUTHORITY,scientificNameAuthorship,, |
|
| 3 |
VEGETATION,habitat,, |
|
| 4 |
PLANT DATA,organismNotes,, |
|
| 5 |
EXACT DATE,dateCollected,/_alt/1, |
|
| 6 |
GENERAL DATE,dateCollected,/_alt/2, |
|
| 7 |
COLLECTOR 1 FIRST NAME,recordedBy,/_join/1/_join_words/1, |
|
| 8 |
COLLECTOR 1 LAST NAME,recordedBy,/_join/1/_join_words/2, |
|
| 9 |
COLLECTOR 2 FIRST NAME,recordedBy,/_join/2/_join_words/1, |
|
| 10 |
COLLECTOR 2 LAST NAME,recordedBy,/_join/2/_join_words/2, |
|
| 11 |
COLLECTOR 3 FIRST NAME,recordedBy,/_join/3/_join_words/1, |
|
| 12 |
COLLECTOR 3 LAST NAME,recordedBy,/_join/3/_join_words/2, |
|
| 13 |
COLLECTOR 4 FIRST NAME,recordedBy,/_join/4/_join_words/1, |
|
| 14 |
COLLECTOR 4 LAST NAME,recordedBy,/_join/4/_join_words/2, |
|
| 15 |
COLLECTOR 5 FIRST NAME,recordedBy,/_join/5/_join_words/1, |
|
| 16 |
COLLECTOR 5 LAST NAME,recordedBy,/_join/5/_join_words/2, |
|
| 17 |
MISC NOTES,occurrenceRemarks,, |
|
| 18 |
ORIGIN,establishmentMeans,, |
|
| 19 |
DETERMINER FIRST NAME,identifiedBy,, |
|
| 20 |
DETERMINER LAST NAME,identifiedBy,, |
|
| 21 |
DET DATE,dateIdentified,, |
|
| 22 |
DET NOTES,identificationRemarks,, |
|
| inputs/TEX/Specimen2/TEX-LL_Texas_latlong_Final2.tab.md5 | ||
|---|---|---|
| 1 |
5cfa94c31b99246e2a76153e2a9b8eb1 |
|
| inputs/TEX/Specimen2/unmapped_terms.csv | ||
|---|---|---|
| 1 |
barcode |
|
| 2 |
*SUBSPECIES AUTHOR |
|
| 3 |
*VARIETY AUTHOR |
|
| 4 |
*LATLONG SOURCE |
|
| 5 |
*LATLONG DATUM |
|
| 6 |
*DATABASED BY |
|
| 7 |
occurrenceRemarks |
|
| 8 |
*UTM |
|
| 9 |
*DETERMINER INSTITUTION |
|
| 10 |
identificationRemarks |
|
Also available in: Unified diff
Added inputs/TEX/