Revision 7696
Added by Aaron Marcuse-Kubitza almost 12 years ago
| inputs/BRIT/MySQL.schema.sql | ||
|---|---|---|
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SET standard_conforming_strings = off; |
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SET escape_string_warning = off; |
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SET standard_conforming_strings = off; |
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SET escape_string_warning = off; |
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-- MySQL dump 10.13 Distrib 5.5.29, for debian-linux-gnu (x86_64) |
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-- |
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-- Host: localhost Database: BRIT |
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-- ------------------------------------------------------ |
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-- Server version 5.5.29-0ubuntu0.12.04.1 |
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|
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/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */; |
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/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */; |
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/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */; |
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SET NAMES 'latin1'; |
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/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */; |
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/*!40103 SET TIME_ZONE='+00:00' */; |
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/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */; |
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/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */; |
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| 19 |
/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO,POSTGRESQL' */; |
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/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */; |
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-- |
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-- Table structure for table "specimen_flat" |
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-- |
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DROP TABLE IF EXISTS "specimen_flat"; |
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/*!40101 SET @saved_cs_client = @@character_set_client */; |
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/*!40101 SET character_set_client = utf8 */; |
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CREATE TABLE "specimen_flat" ( |
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"specimen_id" integer NOT NULL DEFAULT '0', |
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"Institution_Code" varchar(4) NOT NULL DEFAULT '', |
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"Global_Unique_Identifier" bytea DEFAULT NULL, |
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| 33 |
"Collector_Abbrev_Name" varchar(60) DEFAULT NULL, |
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| 34 |
"Collection_Team" varchar(120) DEFAULT NULL, |
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| 35 |
"Collection_Number" varchar(20) DEFAULT NULL, |
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| 36 |
"Date_of_Collection" varchar(60) DEFAULT NULL, |
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| 37 |
"Year_Collected" integer DEFAULT NULL, |
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| 38 |
"Month_Collected" integer DEFAULT NULL, |
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"Day_Collected" integer DEFAULT NULL, |
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"Catalog_Number" varchar(81) DEFAULT NULL, |
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"Scientific_Name" varchar(255) DEFAULT NULL, |
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| 42 |
"Kingdom_Name" varchar(60) DEFAULT NULL, |
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| 43 |
"Division_Name" varchar(60) DEFAULT NULL, |
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| 44 |
"Class_Name" varchar(60) DEFAULT NULL, |
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| 45 |
"Subclass_Name" varchar(60) DEFAULT NULL, |
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| 46 |
"Order_Name" varchar(60) DEFAULT NULL, |
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| 47 |
"Family_Name" varchar(60) DEFAULT NULL, |
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| 48 |
"Genus_Name" varchar(60) DEFAULT NULL, |
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| 49 |
"Specific_Epithet" varchar(60) DEFAULT NULL, |
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| 50 |
"Sp_Authority" varchar(255) DEFAULT NULL, |
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| 51 |
"Infra_Rank" varchar(100) DEFAULT NULL, |
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| 52 |
"Infra_Epithet" varchar(60) DEFAULT NULL, |
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| 53 |
"Local_Name" varchar(60) DEFAULT NULL, |
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| 54 |
"Continent_Name" varchar(60) DEFAULT NULL, |
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| 55 |
"Country_Name" varchar(60) DEFAULT '', |
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| 56 |
"Region_Name" varchar(60) DEFAULT '', |
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| 57 |
"Subregion_Name" varchar(60) DEFAULT NULL, |
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| 58 |
"Closest_Town" varchar(60) DEFAULT NULL, |
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| 59 |
"Research_Site_Name" varchar(60) DEFAULT NULL, |
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| 60 |
"Project_Name" varchar(60) DEFAULT NULL, |
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| 61 |
"Locality_Summary" varchar(60) DEFAULT NULL, |
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| 62 |
"Locality_Description" text, |
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| 63 |
"Locality_Site_Specific" varchar(120) DEFAULT NULL, |
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"Habitat_Description" text, |
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"Habitat_Summary" varchar(200) DEFAULT NULL, |
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| 66 |
"Soil_Description" text, |
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"Notes_Plant" text, |
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"Phenology_Stage" char NOT NULL DEFAULT '', |
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"Height_Min" float DEFAULT NULL, |
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"Height_Max" float DEFAULT NULL, |
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"DBH_Min" float DEFAULT NULL, |
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"DBH_Max" float DEFAULT NULL, |
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"Latitude" float DEFAULT NULL, |
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"Longitude" float DEFAULT NULL, |
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"Coordinate_Uncertainity" varchar(60) DEFAULT NULL, |
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"Elevation_Min" float DEFAULT NULL, |
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"Elevation_Max" float DEFAULT NULL, |
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"Basis_Of_Specimen" varchar(1) NOT NULL DEFAULT '', |
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"Auxilirary_Collections" char NOT NULL DEFAULT '', |
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"Collection_Method" varchar(5) NOT NULL DEFAULT '', |
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"Dubpliate_Herbarium" char NOT NULL DEFAULT '', |
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"Duplicates" bigint DEFAULT NULL, |
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"Type_Specimen" char NOT NULL DEFAULT '', |
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"Updated_date" varchar(60) DEFAULT NULL, |
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"Determined_By_Name" varchar(200) DEFAULT NULL, |
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"Determined_By_Date" varchar(30) DEFAULT NULL, |
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"Year_Identified" integer DEFAULT NULL, |
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"Month_Identified" integer DEFAULT NULL, |
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"Day_Identified" integer DEFAULT NULL |
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); |
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/*!40101 SET character_set_client = @saved_cs_client */; |
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/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */; |
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/*!40101 SET SQL_MODE=@OLD_SQL_MODE */; |
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/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */; |
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/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */; |
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/*!40101 SET CHARACTER_SET_CLIENT=@OLD_CHARACTER_SET_CLIENT */; |
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/*!40101 SET CHARACTER_SET_RESULTS=@OLD_CHARACTER_SET_RESULTS */; |
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/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */; |
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/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */; |
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|
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-- Dump completed on 2013-02-26 14:30:43 |
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| inputs/BRIT/_MySQL/MySQL.schema.sql | ||
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| 1 |
-- MySQL dump 10.13 Distrib 5.5.29, for debian-linux-gnu (x86_64) |
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-- |
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-- Host: localhost Database: BRIT |
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-- ------------------------------------------------------ |
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-- Server version 5.5.29-0ubuntu0.12.04.1 |
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|
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/*!40101 SET @OLD_CHARACTER_SET_CLIENT=@@CHARACTER_SET_CLIENT */; |
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/*!40101 SET @OLD_CHARACTER_SET_RESULTS=@@CHARACTER_SET_RESULTS */; |
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| 9 |
/*!40101 SET @OLD_COLLATION_CONNECTION=@@COLLATION_CONNECTION */; |
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| 10 |
/*!40101 SET NAMES latin1 */; |
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/*!40103 SET @OLD_TIME_ZONE=@@TIME_ZONE */; |
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/*!40103 SET TIME_ZONE='+00:00' */; |
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/*!40014 SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0 */; |
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/*!40014 SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0 */; |
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| 15 |
/*!40101 SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='NO_AUTO_VALUE_ON_ZERO,POSTGRESQL' */; |
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| 16 |
/*!40111 SET @OLD_SQL_NOTES=@@SQL_NOTES, SQL_NOTES=0 */; |
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|
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-- |
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-- Table structure for table "specimen_flat" |
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-- |
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|
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DROP TABLE IF EXISTS "specimen_flat"; |
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/*!40101 SET @saved_cs_client = @@character_set_client */; |
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/*!40101 SET character_set_client = utf8 */; |
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CREATE TABLE "specimen_flat" ( |
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"specimen_id" int(11) NOT NULL DEFAULT '0', |
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"Institution_Code" varchar(4) NOT NULL DEFAULT '', |
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| 28 |
"Global_Unique_Identifier" binary(0) DEFAULT NULL, |
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| 29 |
"Collector_Abbrev_Name" varchar(60) DEFAULT NULL, |
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| 30 |
"Collection_Team" varchar(120) DEFAULT NULL, |
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| 31 |
"Collection_Number" varchar(20) DEFAULT NULL, |
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| 32 |
"Date_of_Collection" varchar(60) DEFAULT NULL, |
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| 33 |
"Year_Collected" int(4) DEFAULT NULL, |
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| 34 |
"Month_Collected" int(2) DEFAULT NULL, |
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| 35 |
"Day_Collected" int(2) DEFAULT NULL, |
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| 36 |
"Catalog_Number" varchar(81) DEFAULT NULL, |
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| 37 |
"Scientific_Name" varchar(255) DEFAULT NULL, |
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| 38 |
"Kingdom_Name" varchar(60) CHARACTER SET utf8 DEFAULT NULL, |
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| 39 |
"Division_Name" varchar(60) CHARACTER SET utf8 DEFAULT NULL, |
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| 40 |
"Class_Name" varchar(60) CHARACTER SET utf8 DEFAULT NULL, |
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| 41 |
"Subclass_Name" varchar(60) CHARACTER SET utf8 DEFAULT NULL, |
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| 42 |
"Order_Name" varchar(60) CHARACTER SET utf8 DEFAULT NULL, |
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| 43 |
"Family_Name" varchar(60) CHARACTER SET utf8 DEFAULT NULL, |
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| 44 |
"Genus_Name" varchar(60) CHARACTER SET utf8 DEFAULT NULL, |
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| 45 |
"Specific_Epithet" varchar(60) CHARACTER SET utf8 DEFAULT NULL, |
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| 46 |
"Sp_Authority" varchar(255) DEFAULT NULL, |
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| 47 |
"Infra_Rank" varchar(100) DEFAULT NULL, |
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| 48 |
"Infra_Epithet" varchar(60) DEFAULT NULL, |
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| 49 |
"Local_Name" varchar(60) DEFAULT NULL, |
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| 50 |
"Continent_Name" varchar(60) DEFAULT NULL, |
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| 51 |
"Country_Name" varchar(60) DEFAULT '', |
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| 52 |
"Region_Name" varchar(60) DEFAULT '', |
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| 53 |
"Subregion_Name" varchar(60) DEFAULT NULL, |
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| 54 |
"Closest_Town" varchar(60) DEFAULT NULL, |
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| 55 |
"Research_Site_Name" varchar(60) DEFAULT NULL, |
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| 56 |
"Project_Name" varchar(60) DEFAULT NULL, |
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| 57 |
"Locality_Summary" varchar(60) DEFAULT NULL, |
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| 58 |
"Locality_Description" text, |
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| 59 |
"Locality_Site_Specific" varchar(120) DEFAULT NULL, |
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| 60 |
"Habitat_Description" text, |
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| 61 |
"Habitat_Summary" varchar(200) DEFAULT NULL, |
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| 62 |
"Soil_Description" text, |
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| 63 |
"Notes_Plant" text, |
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| 64 |
"Phenology_Stage" char(0) NOT NULL DEFAULT '', |
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| 65 |
"Height_Min" float DEFAULT NULL, |
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| 66 |
"Height_Max" float DEFAULT NULL, |
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| 67 |
"DBH_Min" float DEFAULT NULL, |
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| 68 |
"DBH_Max" float DEFAULT NULL, |
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| 69 |
"Latitude" float DEFAULT NULL, |
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| 70 |
"Longitude" float DEFAULT NULL, |
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| 71 |
"Coordinate_Uncertainity" varchar(60) DEFAULT NULL, |
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| 72 |
"Elevation_Min" float DEFAULT NULL, |
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| 73 |
"Elevation_Max" float DEFAULT NULL, |
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| 74 |
"Basis_Of_Specimen" varchar(1) NOT NULL DEFAULT '', |
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| 75 |
"Auxilirary_Collections" char(0) NOT NULL DEFAULT '', |
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| 76 |
"Collection_Method" varchar(5) NOT NULL DEFAULT '', |
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| 77 |
"Dubpliate_Herbarium" char(0) NOT NULL DEFAULT '', |
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| 78 |
"Duplicates" bigint(21) DEFAULT NULL, |
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| 79 |
"Type_Specimen" char(0) NOT NULL DEFAULT '', |
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| 80 |
"Updated_date" varchar(60) DEFAULT NULL, |
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| 81 |
"Determined_By_Name" varchar(200) DEFAULT NULL, |
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| 82 |
"Determined_By_Date" varchar(30) DEFAULT NULL, |
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| 83 |
"Year_Identified" int(4) DEFAULT NULL, |
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| 84 |
"Month_Identified" int(2) DEFAULT NULL, |
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| 85 |
"Day_Identified" int(2) DEFAULT NULL |
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| 86 |
); |
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| 87 |
/*!40101 SET character_set_client = @saved_cs_client */; |
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| 88 |
/*!40103 SET TIME_ZONE=@OLD_TIME_ZONE */; |
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| 89 |
|
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| 90 |
/*!40101 SET SQL_MODE=@OLD_SQL_MODE */; |
|
| 91 |
/*!40014 SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS */; |
|
| 92 |
/*!40014 SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS */; |
|
| 93 |
/*!40101 SET CHARACTER_SET_CLIENT=@OLD_CHARACTER_SET_CLIENT */; |
|
| 94 |
/*!40101 SET CHARACTER_SET_RESULTS=@OLD_CHARACTER_SET_RESULTS */; |
|
| 95 |
/*!40101 SET COLLATION_CONNECTION=@OLD_COLLATION_CONNECTION */; |
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| 96 |
/*!40111 SET SQL_NOTES=@OLD_SQL_NOTES */; |
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| 97 |
|
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| 98 |
-- Dump completed on 2013-02-26 14:30:43 |
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| inputs/BRIT/specimen_flat/header.csv | ||
|---|---|---|
| 1 |
specimen_id,Institution_Code,Global_Unique_Identifier,Collector_Abbrev_Name,Collection_Team,Collection_Number,Date_of_Collection,Year_Collected,Month_Collected,Day_Collected,Catalog_Number,Scientific_Name,Kingdom_Name,Division_Name,Class_Name,Subclass_Name,Order_Name,Family_Name,Genus_Name,Specific_Epithet,Sp_Authority,Infra_Rank,Infra_Epithet,Local_Name,Continent_Name,Country_Name,Region_Name,Subregion_Name,Closest_Town,Research_Site_Name,Project_Name,Locality_Summary,Locality_Description,Locality_Site_Specific,Habitat_Description,Habitat_Summary,Soil_Description,Notes_Plant,Phenology_Stage,Height_Min,Height_Max,DBH_Min,DBH_Max,Latitude,Longitude,Coordinate_Uncertainity,Elevation_Min,Elevation_Max,Basis_Of_Specimen,Auxilirary_Collections,Collection_Method,Dubpliate_Herbarium,Duplicates,Type_Specimen,Updated_date,Determined_By_Name,Determined_By_Date,Year_Identified,Month_Identified,Day_Identified |
|
| inputs/BRIT/specimen_flat/map.csv | ||
|---|---|---|
| 1 |
BRIT,VegCore,Filter,Comments |
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| 2 |
specimen_id,dataProviderRecordID,, |
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Institution_Code,specimenHolders,, |
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| 4 |
Global_Unique_Identifier,UNUSED,, |
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| 5 |
Collector_Abbrev_Name,recordedBy,/_join/1, |
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| 6 |
Collection_Team,recordedBy,/_join/2, |
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| 7 |
Collection_Number,collectorNumber,, |
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| 8 |
Date_of_Collection,dateCollected,, |
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| 9 |
Year_Collected,yearCollected,, |
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| 10 |
Month_Collected,monthCollected,, |
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| 11 |
Day_Collected,dayCollected,, |
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| 12 |
Catalog_Number,accessionNumber,, |
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| 13 |
Scientific_Name,scientificName,, |
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| 14 |
Kingdom_Name,kingdom,, |
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| 15 |
Division_Name,phylum,, |
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| 16 |
Class_Name,class,, |
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| 17 |
Subclass_Name,*subclass,, |
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| 18 |
Order_Name,order,, |
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| 19 |
Family_Name,family,, |
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| 20 |
Genus_Name,genus,, |
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| 21 |
Specific_Epithet,specificEpithet,, |
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| 22 |
Sp_Authority,scientificNameAuthorship,, |
|
| 23 |
Infra_Rank,infraspecificRank,, |
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| 24 |
Infra_Epithet,infraspecificEpithet,, |
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| 25 |
Local_Name,vernacularName,, |
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| 26 |
Continent_Name,continent,, |
|
| 27 |
Country_Name,country,, |
|
| 28 |
Region_Name,stateProvince,, |
|
| 29 |
Subregion_Name,county,, |
|
| 30 |
Closest_Town,UNUSED,, |
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| 31 |
Research_Site_Name,*Research_Site_Name,, |
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| 32 |
Project_Name,projectName,, |
|
| 33 |
Locality_Summary,locality,/_join/1, |
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| 34 |
Locality_Description,locality,/_join/2, |
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| 35 |
Locality_Site_Specific,locality,/_join/3, |
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| 36 |
Habitat_Description,habitat,/_join/1, |
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| 37 |
Habitat_Summary,habitat,/_join/2, |
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| 38 |
Soil_Description,*Soil_Description,, |
|
| 39 |
Notes_Plant,organismNotes,, |
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| 40 |
Phenology_Stage,reproductiveCondition,, |
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| 41 |
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values |
|
| 42 |
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values |
|
| 43 |
DBH_Min,diameterBreastHeight_cm,/_avg/1,Assuming units based on the range and precision of values |
|
| 44 |
DBH_Max,diameterBreastHeight_cm,/_avg/2,Assuming units based on the range and precision of values |
|
| 45 |
Latitude,decimalLatitude,, |
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| 46 |
Longitude,decimalLongitude,, |
|
| 47 |
Coordinate_Uncertainity,coordinateUncertaintyInMeters,,Assuming units based on the range and precision of values |
|
| 48 |
Elevation_Min,minimumElevationInMeters,,Assuming units based on the range and precision of values |
|
| 49 |
Elevation_Max,maximumElevationInMeters,,Assuming units based on the range and precision of values |
|
| 50 |
Basis_Of_Specimen,basisOfRecord,, |
|
| 51 |
Auxilirary_Collections,UNUSED,, |
|
| 52 |
Collection_Method,samplingProtocol,, |
|
| 53 |
Dubpliate_Herbarium,UNUSED,, |
|
| 54 |
Duplicates,*Duplicates,,# of duplicates |
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| 55 |
Type_Specimen,UNUSED,, |
|
| 56 |
Updated_date,modified,, |
|
| 57 |
Determined_By_Name,identifiedBy,, |
|
| 58 |
Determined_By_Date,dateIdentified,, |
|
| 59 |
Year_Identified,yearIdentified,, |
|
| 60 |
Month_Identified,monthIdentified,, |
|
| 61 |
Day_Identified,dayIdentified,, |
|
| inputs/BRIT/specimen_flat/VegBIEN.csv | ||
|---|---|---|
| 1 |
BRIT,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
|
| 2 |
Catalog_Number,"/_if[@name=""if specimen""]/cond/_exists", |
|
| 3 |
specimen_id,"/_if[@name=""if specimen""]/cond/_exists", |
|
| 4 |
Institution_Code,"/_if[@name=""if specimen""]/else/source/shortname/_first/1", |
|
| 5 |
specimen_id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1", |
|
| 6 |
Catalog_Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists", |
|
| 7 |
Catalog_Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
|
| 8 |
specimen_id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
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| 9 |
Institution_Code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2", |
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| 10 |
Catalog_Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
|
| 11 |
Elevation_Max,/location/elevation_m/_alt/2/_avg/max,Assuming units based on the range and precision of values |
|
| 12 |
Elevation_Min,/location/elevation_m/_alt/2/_avg/min,Assuming units based on the range and precision of values |
|
| 13 |
Collection_Number,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
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| 14 |
Locality_Summary,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1/_join/1, |
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| 15 |
Locality_Description,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1/_join/2, |
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| 16 |
Locality_Site_Specific,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1/_join/3, |
|
| 17 |
Habitat_Description,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3/_join/1, |
|
| 18 |
Habitat_Summary,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3/_join/2, |
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| 19 |
Collection_Method,/location/locationevent/*_id/method/name, |
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| 20 |
Project_Name,/location/locationevent/*_id/project/projectname, |
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| 21 |
Determined_By_Date,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value", |
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| 22 |
Day_Identified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
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| 23 |
Month_Identified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
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| 24 |
Year_Identified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 25 |
Date_of_Collection,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
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| 26 |
Day_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 27 |
Month_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 28 |
Year_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 29 |
Notes_Plant,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes, |
|
| 30 |
Collection_Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
|
| 31 |
Phenology_Stage,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition, |
|
| 32 |
Catalog_Number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
|
| 33 |
Collection_Number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else", |
|
| 34 |
Catalog_Number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
|
| 35 |
specimen_id,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
|
| 36 |
Institution_Code,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2", |
|
| 37 |
Institution_Code,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value", |
|
| 38 |
specimen_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
|
| 39 |
DBH_Min,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value/_avg/1,Assuming units based on the range and precision of values |
|
| 40 |
DBH_Max,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value/_avg/2,Assuming units based on the range and precision of values |
|
| 41 |
Height_Min,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m/_avg/1,Assuming units based on the range and precision of values |
|
| 42 |
Height_Max,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m/_avg/2,Assuming units based on the range and precision of values |
|
| 43 |
Collection_Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
|
| 44 |
Scientific_Name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2", |
|
| 45 |
Collector_Abbrev_Name,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/1, |
|
| 46 |
Collection_Team,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/2, |
|
| 47 |
Collection_Number,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 48 |
specimen_id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
|
| 49 |
specimen_id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
|
| 50 |
Determined_By_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
|
| 51 |
Specific_Epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 52 |
Genus_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 53 |
Family_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 54 |
Order_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet", |
|
| 55 |
Class_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet", |
|
| 56 |
Division_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet", |
|
| 57 |
Kingdom_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
|
| 58 |
Infra_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet, |
|
| 59 |
Family_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family, |
|
| 60 |
Scientific_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1, |
|
| 61 |
Genus_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 62 |
Specific_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 63 |
Infra_Epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 64 |
Infra_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 65 |
Sp_Authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2, |
|
| 66 |
Sp_Authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
|
| 67 |
Family_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 68 |
Genus_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 69 |
Specific_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
|
| 70 |
Scientific_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
|
| 71 |
Determined_By_Date,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value, |
|
| 72 |
Day_Identified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 73 |
Month_Identified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 74 |
Year_Identified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 75 |
Catalog_Number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
|
| 76 |
Collection_Number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then", |
|
| 77 |
Locality_Summary,/location/locationnarrative/_merge/1/_join/1, |
|
| 78 |
Locality_Description,/location/locationnarrative/_merge/1/_join/2, |
|
| 79 |
Locality_Site_Specific,/location/locationnarrative/_merge/1/_join/3, |
|
| 80 |
Habitat_Description,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value/_join/1","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
|
| 81 |
Habitat_Summary,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value/_join/2","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
|
| 82 |
Coordinate_Uncertainity,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,Assuming units based on the range and precision of values |
|
| 83 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 84 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 85 |
Continent_Name,/location/locationplace/*_id/place/continent, |
|
| 86 |
Country_Name,/location/locationplace/*_id/place/country, |
|
| 87 |
Subregion_Name,/location/locationplace/*_id/place/county, |
|
| 88 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
|
| 89 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
|
| 90 |
Country_Name,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2, |
|
| 91 |
Subregion_Name,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2, |
|
| 92 |
Region_Name,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2, |
|
| 93 |
Region_Name,/location/locationplace/*_id/place/stateprovince, |
|
| 94 |
Auxilirary_Collections,,** No non-empty join mapping for UNUSED ** |
|
| 95 |
Basis_Of_Specimen,,** No join mapping for basisOfRecord ** |
|
| 96 |
Closest_Town,,** No non-empty join mapping for UNUSED ** |
|
| 97 |
Dubpliate_Herbarium,,** No non-empty join mapping for UNUSED ** |
|
| 98 |
Duplicates,,** No join mapping for *Duplicates ** # of duplicates |
|
| 99 |
Global_Unique_Identifier,,** No non-empty join mapping for UNUSED ** |
|
| 100 |
Infra_Rank,,** No join mapping for infraspecificRank ** |
|
| 101 |
Local_Name,,** No join mapping for vernacularName ** |
|
| 102 |
Research_Site_Name,,** No join mapping for *Research_Site_Name ** |
|
| 103 |
Soil_Description,,** No join mapping for *Soil_Description ** |
|
| 104 |
Subclass_Name,,** No join mapping for *subclass ** |
|
| 105 |
Type_Specimen,,** No non-empty join mapping for UNUSED ** |
|
| 106 |
Updated_date,,** No join mapping for modified ** |
|
| inputs/BRIT/specimen_flat/test.xml.ref | ||
|---|---|---|
| 1 |
Put template: |
|
| 2 |
<VegBIEN> |
|
| 3 |
<_setDefault id="-1"> |
|
| 4 |
<source_id><source><shortname>BRIT</shortname></source></source_id> |
|
| 5 |
<path> |
|
| 6 |
<_simplifyPath> |
|
| 7 |
<next>parent_id</next> |
|
| 8 |
<path> |
|
| 9 |
<location> |
|
| 10 |
<authorlocationcode> |
|
| 11 |
<_alt> |
|
| 12 |
<1>$specimen_id</1> |
|
| 13 |
<2> |
|
| 14 |
<_join> |
|
| 15 |
<1>$Institution_Code</1> |
|
| 16 |
<3>$Catalog_Number</3> |
|
| 17 |
</_join> |
|
| 18 |
</2> |
|
| 19 |
</_alt> |
|
| 20 |
</authorlocationcode> |
|
| 21 |
<elevation_m> |
|
| 22 |
<_avg> |
|
| 23 |
<max>$Elevation_Max</max> |
|
| 24 |
<min>$Elevation_Min</min> |
|
| 25 |
</_avg> |
|
| 26 |
</elevation_m> |
|
| 27 |
<iscultivated> |
|
| 28 |
<_locationnarrative_is_cultivated> |
|
| 29 |
<locationnarrative> |
|
| 30 |
<_join> |
|
| 31 |
<1> |
|
| 32 |
<_join> |
|
| 33 |
<1>$Locality_Summary</1> |
|
| 34 |
<2>$Locality_Description</2> |
|
| 35 |
<3>$Locality_Site_Specific</3> |
|
| 36 |
</_join> |
|
| 37 |
</1> |
|
| 38 |
<3> |
|
| 39 |
<_join> |
|
| 40 |
<1>$Habitat_Description</1> |
|
| 41 |
<2>$Habitat_Summary</2> |
|
| 42 |
</_join> |
|
| 43 |
</3> |
|
| 44 |
</_join> |
|
| 45 |
</locationnarrative> |
|
| 46 |
</_locationnarrative_is_cultivated> |
|
| 47 |
</iscultivated> |
|
| 48 |
<locationevent> |
|
| 49 |
<method_id><method><name>$Collection_Method</name></method></method_id> |
|
| 50 |
<project_id><project><projectname>$Project_Name</projectname></project></project_id> |
|
| 51 |
<taxonoccurrence> |
|
| 52 |
<aggregateoccurrence> |
|
| 53 |
<collectiondate> |
|
| 54 |
<_alt> |
|
| 55 |
<1>$Date_of_Collection</1> |
|
| 56 |
<2> |
|
| 57 |
<_date> |
|
| 58 |
<day> |
|
| 59 |
<_nullIf> |
|
| 60 |
<null>0</null> |
|
| 61 |
<type>float</type> |
|
| 62 |
<value>$Day_Collected</value> |
|
| 63 |
</_nullIf> |
|
| 64 |
</day> |
|
| 65 |
<month> |
|
| 66 |
<_nullIf> |
|
| 67 |
<null>0</null> |
|
| 68 |
<type>float</type> |
|
| 69 |
<value>$Month_Collected</value> |
|
| 70 |
</_nullIf> |
|
| 71 |
</month> |
|
| 72 |
<year> |
|
| 73 |
<_nullIf> |
|
| 74 |
<null>0</null> |
|
| 75 |
<type>float</type> |
|
| 76 |
<value>$Year_Collected</value> |
|
| 77 |
</_nullIf> |
|
| 78 |
</year> |
|
| 79 |
</_date> |
|
| 80 |
</2> |
|
| 81 |
</_alt> |
|
| 82 |
</collectiondate> |
|
| 83 |
<notes>$Notes_Plant</notes> |
|
| 84 |
<plantobservation> |
|
| 85 |
<authorplantcode>$Collection_Number</authorplantcode> |
|
| 86 |
<reproductivecondition>$Phenology_Stage</reproductivecondition> |
|
| 87 |
<specimenreplicate> |
|
| 88 |
<catalognumber_dwc>$Catalog_Number</catalognumber_dwc> |
|
| 89 |
<collectionnumber>$Collection_Number</collectionnumber> |
|
| 90 |
<institution_id> |
|
| 91 |
<sourcelist> |
|
| 92 |
<name>$Institution_Code</name> |
|
| 93 |
<sourcename> |
|
| 94 |
<name> |
|
| 95 |
<_split> |
|
| 96 |
<separator>[,;] *</separator> |
|
| 97 |
<value>$Institution_Code</value> |
|
| 98 |
</_split> |
|
| 99 |
</name> |
|
| 100 |
</sourcename> |
|
| 101 |
</sourcelist> |
|
| 102 |
</institution_id> |
|
| 103 |
<sourceaccessioncode>$specimen_id</sourceaccessioncode> |
|
| 104 |
</specimenreplicate> |
|
| 105 |
<stemobservation> |
|
| 106 |
<diameterbreastheight_m> |
|
| 107 |
<_cm_to_m> |
|
| 108 |
<value> |
|
| 109 |
<_avg> |
|
| 110 |
<1>$DBH_Min</1> |
|
| 111 |
<2>$DBH_Max</2> |
|
| 112 |
</_avg> |
|
| 113 |
</value> |
|
| 114 |
</_cm_to_m> |
|
| 115 |
</diameterbreastheight_m> |
|
| 116 |
<height_m> |
|
| 117 |
<_avg> |
|
| 118 |
<1>$Height_Min</1> |
|
| 119 |
<2>$Height_Max</2> |
|
| 120 |
</_avg> |
|
| 121 |
</height_m> |
|
| 122 |
</stemobservation> |
|
| 123 |
</plantobservation> |
|
| 124 |
</aggregateoccurrence> |
|
| 125 |
<collector_id> |
|
| 126 |
<party> |
|
| 127 |
<fullname> |
|
| 128 |
<_join> |
|
| 129 |
<1>$Collector_Abbrev_Name</1> |
|
| 130 |
<2>$Collection_Team</2> |
|
| 131 |
</_join> |
|
| 132 |
</fullname> |
|
| 133 |
</party> |
|
| 134 |
</collector_id> |
|
| 135 |
<sourceaccessioncode>$specimen_id</sourceaccessioncode> |
|
| 136 |
<taxondetermination> |
|
| 137 |
<party_id><party><fullname>$Determined_By_Name</fullname></party></party_id> |
|
| 138 |
<taxonverbatim_id> |
|
| 139 |
<taxonverbatim> |
|
| 140 |
<taxonlabel_id> |
|
| 141 |
<taxonlabel> |
|
| 142 |
<parent_id> |
|
| 143 |
<taxonlabel> |
|
| 144 |
<parent_id> |
|
| 145 |
<taxonlabel> |
|
| 146 |
<rank>cultivar</rank> |
|
| 147 |
<parent_id> |
|
| 148 |
<taxonlabel> |
|
| 149 |
<rank>forma</rank> |
|
| 150 |
<parent_id> |
|
| 151 |
<taxonlabel> |
|
| 152 |
<rank>variety</rank> |
|
| 153 |
<parent_id> |
|
| 154 |
<taxonlabel> |
|
| 155 |
<rank>subspecies</rank> |
|
| 156 |
<parent_id> |
|
| 157 |
<taxonlabel> |
|
| 158 |
<rank>species</rank> |
|
| 159 |
<taxonepithet>$Specific_Epithet</taxonepithet> |
|
| 160 |
<parent_id> |
|
| 161 |
<taxonlabel> |
|
| 162 |
<rank>genus</rank> |
|
| 163 |
<taxonepithet>$Genus_Name</taxonepithet> |
|
| 164 |
<parent_id> |
|
| 165 |
<taxonlabel> |
|
| 166 |
<rank>family</rank> |
|
| 167 |
<taxonepithet>$Family_Name</taxonepithet> |
|
| 168 |
<parent_id> |
|
| 169 |
<taxonlabel> |
|
| 170 |
<rank>order</rank> |
|
| 171 |
<taxonepithet>$Order_Name</taxonepithet> |
|
| 172 |
<parent_id> |
|
| 173 |
<taxonlabel> |
|
| 174 |
<rank>class</rank> |
|
| 175 |
<taxonepithet>$Class_Name</taxonepithet> |
|
| 176 |
<parent_id> |
|
| 177 |
<taxonlabel> |
|
| 178 |
<rank>phylum</rank> |
|
| 179 |
<taxonepithet>$Division_Name</taxonepithet> |
|
| 180 |
<parent_id> |
|
| 181 |
<taxonlabel> |
|
| 182 |
<rank>kingdom</rank> |
|
| 183 |
<taxonepithet>$Kingdom_Name</taxonepithet> |
|
| 184 |
</taxonlabel> |
|
| 185 |
</parent_id> |
|
| 186 |
</taxonlabel> |
|
| 187 |
</parent_id> |
|
| 188 |
</taxonlabel> |
|
| 189 |
</parent_id> |
|
| 190 |
</taxonlabel> |
|
| 191 |
</parent_id> |
|
| 192 |
</taxonlabel> |
|
| 193 |
</parent_id> |
|
| 194 |
</taxonlabel> |
|
| 195 |
</parent_id> |
|
| 196 |
</taxonlabel> |
|
| 197 |
</parent_id> |
|
| 198 |
</taxonlabel> |
|
| 199 |
</parent_id> |
|
| 200 |
</taxonlabel> |
|
| 201 |
</parent_id> |
|
| 202 |
</taxonlabel> |
|
| 203 |
</parent_id> |
|
| 204 |
</taxonlabel> |
|
| 205 |
</parent_id> |
|
| 206 |
<taxonepithet>$Infra_Epithet</taxonepithet> |
|
| 207 |
</taxonlabel> |
|
| 208 |
</parent_id> |
|
| 209 |
<taxonomicname> |
|
| 210 |
<_merge_prefix> |
|
| 211 |
<prefix><_taxon_family_require_std><family>$Family_Name</family></_taxon_family_require_std></prefix> |
|
| 212 |
<value> |
|
| 213 |
<_alt> |
|
| 214 |
<1>$Scientific_Name</1> |
|
| 215 |
<2> |
|
| 216 |
<_join_words> |
|
| 217 |
<1> |
|
| 218 |
<_join_words> |
|
| 219 |
<2>$Genus_Name</2> |
|
| 220 |
<3>$Specific_Epithet</3> |
|
| 221 |
<5>$Infra_Epithet</5> |
|
| 222 |
</_join_words> |
|
| 223 |
</1> |
|
| 224 |
<2>$Sp_Authority</2> |
|
| 225 |
</_join_words> |
|
| 226 |
</2> |
|
| 227 |
</_alt> |
|
| 228 |
</value> |
|
| 229 |
</_merge_prefix> |
|
| 230 |
</taxonomicname> |
|
| 231 |
</taxonlabel> |
|
| 232 |
</taxonlabel_id> |
|
| 233 |
<author>$Sp_Authority</author> |
|
| 234 |
<family>$Family_Name</family> |
|
| 235 |
<genus>$Genus_Name</genus> |
|
| 236 |
<specific_epithet>$Specific_Epithet</specific_epithet> |
|
| 237 |
<taxonomicname>$Scientific_Name</taxonomicname> |
|
| 238 |
</taxonverbatim> |
|
| 239 |
</taxonverbatim_id> |
|
| 240 |
<determinationdate> |
|
| 241 |
<_alt> |
|
| 242 |
<1><_dateRangeStart><value>$Determined_By_Date</value></_dateRangeStart></1> |
|
| 243 |
<2> |
|
| 244 |
<_date> |
|
| 245 |
<day> |
|
| 246 |
<_nullIf> |
|
| 247 |
<null>0</null> |
|
| 248 |
<type>float</type> |
|
| 249 |
<value>$Day_Identified</value> |
|
| 250 |
</_nullIf> |
|
| 251 |
</day> |
|
| 252 |
<month> |
|
| 253 |
<_nullIf> |
|
| 254 |
<null>0</null> |
|
| 255 |
<type>float</type> |
|
| 256 |
<value>$Month_Identified</value> |
|
| 257 |
</_nullIf> |
|
| 258 |
</month> |
|
| 259 |
<year> |
|
| 260 |
<_nullIf> |
|
| 261 |
<null>0</null> |
|
| 262 |
<type>float</type> |
|
| 263 |
<value>$Year_Identified</value> |
|
| 264 |
</_nullIf> |
|
| 265 |
</year> |
|
| 266 |
</_date> |
|
| 267 |
</2> |
|
| 268 |
</_alt> |
|
| 269 |
</determinationdate> |
|
| 270 |
</taxondetermination> |
|
| 271 |
</taxonoccurrence> |
|
| 272 |
</locationevent> |
|
| 273 |
<locationnarrative> |
|
| 274 |
<_merge> |
|
| 275 |
<1> |
|
| 276 |
<_join> |
|
| 277 |
<1>$Locality_Summary</1> |
|
| 278 |
<2>$Locality_Description</2> |
|
| 279 |
<3>$Locality_Site_Specific</3> |
|
| 280 |
</_join> |
|
| 281 |
</1> |
|
| 282 |
<3> |
|
| 283 |
<_label> |
|
| 284 |
<label>habitat</label> |
|
| 285 |
<value> |
|
| 286 |
<_join> |
|
| 287 |
<1>$Habitat_Description</1> |
|
| 288 |
<2>$Habitat_Summary</2> |
|
| 289 |
</_join> |
|
| 290 |
</value> |
|
| 291 |
</_label> |
|
| 292 |
</3> |
|
| 293 |
</_merge> |
|
| 294 |
</locationnarrative> |
|
| 295 |
<locationplace> |
|
| 296 |
<place_id> |
|
| 297 |
<place> |
|
| 298 |
<coordinates_id> |
|
| 299 |
<coordinates> |
|
| 300 |
<coordsaccuracy_m><_noCV><value>$Coordinate_Uncertainity</value></_noCV></coordsaccuracy_m> |
|
| 301 |
<latitude_deg> |
|
| 302 |
<_nullIf> |
|
| 303 |
<null>0</null> |
|
| 304 |
<type>float</type> |
|
| 305 |
<value>$Latitude</value> |
|
| 306 |
</_nullIf> |
|
| 307 |
</latitude_deg> |
|
| 308 |
<longitude_deg> |
|
| 309 |
<_nullIf> |
|
| 310 |
<null>0</null> |
|
| 311 |
<type>float</type> |
|
| 312 |
<value>$Longitude</value> |
|
| 313 |
</_nullIf> |
|
| 314 |
</longitude_deg> |
|
| 315 |
</coordinates> |
|
| 316 |
</coordinates_id> |
|
| 317 |
<continent>$Continent_Name</continent> |
|
| 318 |
<country>$Country_Name</country> |
|
| 319 |
<county>$Subregion_Name</county> |
|
| 320 |
<matched_place_id> |
|
| 321 |
<place> |
|
| 322 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 323 |
<coordinates_id> |
|
| 324 |
<coordinates> |
|
| 325 |
<source_id><source><shortname>geoscrub</shortname></source></source_id> |
|
| 326 |
<latitude_deg> |
|
| 327 |
<_nullIf> |
|
| 328 |
<null>0</null> |
|
| 329 |
<type>float</type> |
|
| 330 |
<value>$Latitude</value> |
|
| 331 |
</_nullIf> |
|
| 332 |
</latitude_deg> |
|
| 333 |
<longitude_deg> |
|
| 334 |
<_nullIf> |
|
| 335 |
<null>0</null> |
|
| 336 |
<type>float</type> |
|
| 337 |
<value>$Longitude</value> |
|
| 338 |
</_nullIf> |
|
| 339 |
</longitude_deg> |
|
| 340 |
</coordinates> |
|
| 341 |
</coordinates_id> |
|
| 342 |
<country>$Country_Name</country> |
|
| 343 |
<county>$Subregion_Name</county> |
|
| 344 |
<stateprovince>$Region_Name</stateprovince> |
|
| 345 |
</place> |
|
| 346 |
</matched_place_id> |
|
| 347 |
<stateprovince>$Region_Name</stateprovince> |
|
| 348 |
</place> |
|
| 349 |
</place_id> |
|
| 350 |
</locationplace> |
|
| 351 |
</location> |
|
| 352 |
</path> |
|
| 353 |
</_simplifyPath> |
|
| 354 |
</path> |
|
| 355 |
</_setDefault> |
|
| 356 |
</VegBIEN> |
|
| 357 |
Inserted 34 new rows into database |
|
| inputs/BRIT/specimen_flat/new_terms.csv | ||
|---|---|---|
| 1 |
specimen_id,dataProviderRecordID,, |
|
| 2 |
Collector_Abbrev_Name,recordedBy,/_join/1, |
|
| 3 |
Collection_Team,recordedBy,/_join/2, |
|
| 4 |
Date_of_Collection,dateCollected,, |
|
| 5 |
Kingdom_Name,kingdom,, |
|
| 6 |
Division_Name,phylum,, |
|
| 7 |
Class_Name,class,, |
|
| 8 |
Subclass_Name,*subclass,, |
|
| 9 |
Order_Name,order,, |
|
| 10 |
Family_Name,family,, |
|
| 11 |
Genus_Name,genus,, |
|
| 12 |
Sp_Authority,scientificNameAuthorship,, |
|
| 13 |
Infra_Rank,infraspecificRank,, |
|
| 14 |
Infra_Epithet,infraspecificEpithet,, |
|
| 15 |
Local_Name,vernacularName,, |
|
| 16 |
Continent_Name,continent,, |
|
| 17 |
Region_Name,stateProvince,, |
|
| 18 |
Subregion_Name,county,, |
|
| 19 |
Locality_Summary,locality,/_join/1, |
|
| 20 |
Locality_Description,locality,/_join/2, |
|
| 21 |
Locality_Site_Specific,locality,/_join/3, |
|
| 22 |
Habitat_Description,habitat,/_join/1, |
|
| 23 |
Habitat_Summary,habitat,/_join/2, |
|
| 24 |
Notes_Plant,organismNotes,, |
|
| 25 |
Phenology_Stage,reproductiveCondition,, |
|
| 26 |
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values |
|
| 27 |
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values |
|
| 28 |
DBH_Min,diameterBreastHeight_cm,/_avg/1,Assuming units based on the range and precision of values |
|
| 29 |
DBH_Max,diameterBreastHeight_cm,/_avg/2,Assuming units based on the range and precision of values |
|
| 30 |
Coordinate_Uncertainity,coordinateUncertaintyInMeters,,Assuming units based on the range and precision of values |
|
| 31 |
Elevation_Min,minimumElevationInMeters,,Assuming units based on the range and precision of values |
|
| 32 |
Elevation_Max,maximumElevationInMeters,,Assuming units based on the range and precision of values |
|
| 33 |
Basis_Of_Specimen,basisOfRecord,, |
|
| 34 |
Collection_Method,samplingProtocol,, |
|
| 35 |
Updated_date,modified,, |
|
| 36 |
Determined_By_Name,identifiedBy,, |
|
| 37 |
Determined_By_Date,dateIdentified,, |
|
| inputs/BRIT/specimen_flat/unmapped_terms.csv | ||
|---|---|---|
| 1 |
*subclass |
|
| 2 |
infraspecificRank |
|
| 3 |
vernacularName |
|
| 4 |
*Research_Site_Name |
|
| 5 |
*Soil_Description |
|
| 6 |
basisOfRecord |
|
| 7 |
*Duplicates |
|
| 8 |
modified |
|
Also available in: Unified diff
Mapped inputs/BRIT/