1 |
7696
|
aaronmk
|
BRIT,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
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2 |
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Catalog_Number,"/_if[@name=""if specimen""]/cond/_exists",
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3 |
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specimen_id,"/_if[@name=""if specimen""]/cond/_exists",
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4 |
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Institution_Code,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
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5 |
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specimen_id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1",
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6 |
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Catalog_Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
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7 |
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Catalog_Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
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8 |
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specimen_id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
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9 |
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Institution_Code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",
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10 |
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Catalog_Number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
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11 |
7703
|
aaronmk
|
Elevation_Min,/location/elevation_m/_alt/2/_avg/1,Assuming units based on the range and precision of values
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12 |
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Elevation_Max,/location/elevation_m/_alt/2/_avg/2,Assuming units based on the range and precision of values
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13 |
7696
|
aaronmk
|
Collection_Number,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
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14 |
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Locality_Summary,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1/_join/1,
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15 |
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Locality_Description,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1/_join/2,
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16 |
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Locality_Site_Specific,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1/_join/3,
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17 |
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Habitat_Description,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3/_join/1,
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18 |
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Habitat_Summary,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3/_join/2,
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19 |
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Collection_Method,/location/locationevent/*_id/method/name,
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20 |
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Project_Name,/location/locationevent/*_id/project/projectname,
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21 |
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Determined_By_Date,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
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22 |
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Day_Identified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
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23 |
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Month_Identified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
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24 |
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Year_Identified,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
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25 |
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Date_of_Collection,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
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26 |
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Day_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
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27 |
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Month_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
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28 |
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Year_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
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29 |
7713
|
aaronmk
|
Notes_Plant,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
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30 |
7696
|
aaronmk
|
Collection_Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
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31 |
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Phenology_Stage,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
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32 |
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Catalog_Number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
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33 |
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Collection_Number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
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34 |
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Catalog_Number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
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35 |
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specimen_id,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
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36 |
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Institution_Code,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",
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37 |
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Institution_Code,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",
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38 |
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specimen_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
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39 |
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DBH_Min,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value/_avg/1,Assuming units based on the range and precision of values
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40 |
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DBH_Max,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value/_avg/2,Assuming units based on the range and precision of values
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41 |
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Height_Min,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m/_avg/1,Assuming units based on the range and precision of values
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42 |
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Height_Max,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m/_avg/2,Assuming units based on the range and precision of values
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43 |
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Collection_Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3",
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44 |
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Scientific_Name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
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45 |
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Collector_Abbrev_Name,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/1,
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46 |
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Collection_Team,/location/locationevent/taxonoccurrence/collector_id/party/fullname/_join/2,
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47 |
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Collection_Number,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
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48 |
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specimen_id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
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49 |
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specimen_id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
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50 |
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Determined_By_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
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51 |
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Specific_Epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
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52 |
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Genus_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
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53 |
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Family_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
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54 |
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Order_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
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55 |
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Class_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
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56 |
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Division_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
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57 |
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Kingdom_Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
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58 |
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Infra_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
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59 |
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Family_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
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60 |
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Scientific_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
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61 |
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Genus_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2,
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62 |
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Specific_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
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63 |
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Infra_Epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
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64 |
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Infra_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
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65 |
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Sp_Authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
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66 |
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Sp_Authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
67 |
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Family_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
68 |
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Genus_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
69 |
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Specific_Epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
70 |
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Scientific_Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
|
71 |
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Determined_By_Date,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
|
72 |
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Day_Identified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
73 |
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Month_Identified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
74 |
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Year_Identified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
75 |
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Catalog_Number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
|
76 |
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Collection_Number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then",
|
77 |
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Locality_Summary,/location/locationnarrative/_merge/1/_join/1,
|
78 |
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Locality_Description,/location/locationnarrative/_merge/1/_join/2,
|
79 |
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Locality_Site_Specific,/location/locationnarrative/_merge/1/_join/3,
|
80 |
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Habitat_Description,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value/_join/1","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
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81 |
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Habitat_Summary,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value/_join/2","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
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82 |
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Coordinate_Uncertainity,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,Assuming units based on the range and precision of values
|
83 |
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Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
|
84 |
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Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
|
85 |
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Continent_Name,/location/locationplace/*_id/place/continent,
|
86 |
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Country_Name,/location/locationplace/*_id/place/country,
|
87 |
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Subregion_Name,/location/locationplace/*_id/place/county,
|
88 |
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Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
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89 |
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Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
90 |
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Country_Name,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
91 |
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Subregion_Name,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
92 |
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Region_Name,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
93 |
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Region_Name,/location/locationplace/*_id/place/stateprovince,
|
94 |
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Auxilirary_Collections,,** No non-empty join mapping for UNUSED **
|
95 |
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Basis_Of_Specimen,,** No join mapping for basisOfRecord **
|
96 |
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Closest_Town,,** No non-empty join mapping for UNUSED **
|
97 |
|
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Dubpliate_Herbarium,,** No non-empty join mapping for UNUSED **
|
98 |
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Duplicates,,** No join mapping for *Duplicates ** # of duplicates
|
99 |
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Global_Unique_Identifier,,** No non-empty join mapping for UNUSED **
|
100 |
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Infra_Rank,,** No join mapping for infraspecificRank **
|
101 |
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Local_Name,,** No join mapping for vernacularName **
|
102 |
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Research_Site_Name,,** No join mapping for *Research_Site_Name **
|
103 |
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Soil_Description,,** No join mapping for *Soil_Description **
|
104 |
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Subclass_Name,,** No join mapping for *subclass **
|
105 |
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Type_Specimen,,** No non-empty join mapping for UNUSED **
|
106 |
|
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Updated_date,,** No join mapping for modified **
|