Revision 7716
Added by Aaron Marcuse-Kubitza almost 12 years ago
inputs/CVS/taxonObservation_/VegBIEN.csv | ||
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13 | 13 |
interpretationDate,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value", |
14 | 14 |
taxonFit,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit", |
15 | 15 |
collectionDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
16 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
16 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
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|
17 | 17 |
collectionNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
18 | 18 |
museumAccessionNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
19 | 19 |
collectionNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else", |
inputs/MO/Specimen/new_terms.csv | ||
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1 |
convertednotes,organismNotes,, |
|
1 |
convertednotes,occurrenceRemarks,, |
mappings/VegCore.htm | ||
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6 | 6 |
<meta name="description" content="Redmine" /> |
7 | 7 |
<meta name="keywords" content="issue,bug,tracker" /> |
8 | 8 |
<meta content="authenticity_token" name="csrf-param" /> |
9 |
<meta content="7M6YE76M81IwyE9fgpn8kWs5FUVNy0X2cRi0P9Ve2pA=" name="csrf-token" />
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9 |
<meta content="shzNu0PeoOYwJSxVAWk3gtNTWMlsEuEHuPRUfgCkyJk=" name="csrf-token" />
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|
10 | 10 |
<link rel='shortcut icon' href='/nceas/favicon.ico?1347421715' /> |
11 | 11 |
<link href="/nceas/stylesheets/jquery/jquery-ui-1.8.21.css?1357775071" media="all" rel="stylesheet" type="text/css" /> |
12 | 12 |
<link href="/nceas/stylesheets/application.css?1357775071" media="all" rel="stylesheet" type="text/css" /> |
... | ... | |
113 | 113 |
</li><li><a href="#Occurrence">Occurrence</a><ul><li><ul><li><a href="#Observation_VegCore">Observation_VegCore</a></li></ul> |
114 | 114 |
</li><li><a href="#occurrenceID">occurrenceID</a><ul><li><a href="#globalUniqueIdentifier_DwC">globalUniqueIdentifier_DwC</a></li></ul> |
115 | 115 |
</li><li><a href="#globalUniqueIdentifier">?globalUniqueIdentifier</a><ul><li><a href="#Alternative-globalUniqueIdentifier_DwC">Alternative: globalUniqueIdentifier_DwC</a></li><li><a href="#Alternative-globalUniqueIdentifier_SpeciesLink">Alternative: globalUniqueIdentifier_SpeciesLink</a></li></ul> |
116 |
</li><li><a href="#basisOfRecord">basisOfRecord</a></li><li><a href="#occurrenceRemarks">occurrenceRemarks</a></li><li><a href="#recordedBy">recordedBy</a><ul><li><a href="#collector">collector</a></li></ul> |
|
116 |
</li><li><a href="#basisOfRecord">basisOfRecord</a></li><li><a href="#occurrenceRemarks">occurrenceRemarks</a><ul><li><a href="#organismNotes">organismNotes</a></li><li><a href="#fieldNotes_DwC_curatorial">fieldNotes_DwC_curatorial</a></li><li><a href="#remarks">remarks</a></li><li><a href="#notes_SALVIAS">notes_SALVIAS</a></li></ul> |
|
117 |
</li><li><a href="#fieldNotes">?fieldNotes</a><ul><li><a href="#Alternative-fieldNotes_DwC_curatorial">Alternative: fieldNotes_DwC_curatorial</a></li><li><a href="#Alternative-fieldNotes_DwC_terms">Alternative: fieldNotes_DwC_terms</a></li></ul> |
|
118 |
</li><li><a href="#notes">?notes</a><ul><li><a href="#Alternative-notes_SALVIAS">Alternative: notes_SALVIAS</a></li><li><a href="#Alternative-notes_Madidi">Alternative: notes_Madidi</a></li></ul> |
|
119 |
</li><li><a href="#recordedBy">recordedBy</a><ul><li><a href="#collector">collector</a></li></ul> |
|
117 | 120 |
</li><li><a href="#recordedBy_givenName">recordedBy_givenName</a></li><li><a href="#recordedBy_middleName">recordedBy_middleName</a></li><li><a href="#recordedBy_surName">recordedBy_surName</a></li><li><a href="#associatedMedia">associatedMedia</a></li><li><a href="#associatedReferences">associatedReferences</a></li><li><a href="#associatedOccurrences">associatedOccurrences</a></li><li><a href="#associatedSequences">associatedSequences</a></li></ul> |
118 | 121 |
</li><li><a href="#Observation">?Observation</a><ul><li><ul><li><a href="#Alternative-Observation_VegCore">Alternative: Observation_VegCore</a></li><li><a href="#Alternative-Observation_VegBank">Alternative: Observation_VegBank</a></li></ul> |
119 | 122 |
</li></ul> |
... | ... | |
274 | 277 |
</li><li><a href="#canopyForm">canopyForm</a><ul><li><a href="#stemCanopyForm">stemCanopyForm</a></li></ul> |
275 | 278 |
</li><li><a href="#canopyPosition">canopyPosition</a><ul><li><a href="#stemCanopyPosition">stemCanopyPosition</a></li></ul> |
276 | 279 |
</li><li><a href="#lianaInfestation">lianaInfestation</a><ul><li><a href="#stemLianaInfestation">stemLianaInfestation</a></li></ul> |
277 |
</li><li><a href="#organismNotes">organismNotes</a><ul><li><a href="#fieldNotes_DwC_curatorial">fieldNotes_DwC_curatorial</a></li><li><a href="#remarks">remarks</a></li><li><a href="#notes_SALVIAS">notes_SALVIAS</a></li></ul> |
|
278 |
</li><li><a href="#fieldNotes">?fieldNotes</a><ul><li><a href="#Alternative-fieldNotes_DwC_curatorial">Alternative: fieldNotes_DwC_curatorial</a></li><li><a href="#Alternative-fieldNotes_DwC_terms">Alternative: fieldNotes_DwC_terms</a></li></ul> |
|
279 |
</li><li><a href="#notes">?notes</a><ul><li><a href="#Alternative-notes_SALVIAS">Alternative: notes_SALVIAS</a></li><li><a href="#Alternative-notes_Madidi">Alternative: notes_Madidi</a></li></ul> |
|
280 | 280 |
</li></ul> |
281 | 281 |
</li><li><a href="#Stem">Stem</a><ul><li><ul><li><a href="#StemLocation">StemLocation</a></li></ul> |
282 | 282 |
</li><li><a href="#stemID">stemID</a></li><li><a href="#stemTag">stemTag</a><ul><li><a href="#stemTag2">stemTag2</a></li></ul> |
... | ... | |
726 | 726 |
<h2 style="padding-left:2em;"><a href="#occurrenceRemarks" class="wiki-page">occurrenceRemarks</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/#occurrenceRemarks"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a><a href="#occurrenceRemarks" class="wiki-anchor">¶</a></h2> |
727 | 727 |
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728 | 728 |
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729 |
<a name="organismNotes"></a> |
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730 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#organismNotes" class="wiki-page">organismNotes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/note"><img src="_" style="font-size: small;" title="VegX" alt="VegX" /></a><a href="#organismNotes" class="wiki-anchor">¶</a></h3> |
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733 |
<a name="fieldNotes_DwC_curatorial"></a> |
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734 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#fieldNotes_DwC_curatorial" class="wiki-page">fieldNotes_DwC_curatorial</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/history/index.htm#FieldNotes-2007-04-17"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#fieldNotes"><img src="_" style="font-size: small;" title="?fieldNotes" alt="?fieldNotes" /></a><a href="#fieldNotes_DwC_curatorial" class="wiki-anchor">¶</a></h3> |
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735 |
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736 |
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737 |
<a name="remarks"></a> |
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738 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#remarks" class="wiki-page">remarks</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/history/index.htm#Remarks-2003-06-17"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a><a href="#remarks" class="wiki-anchor">¶</a></h3> |
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739 |
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741 |
<a name="notes_SALVIAS"></a> |
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742 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#notes_SALVIAS" class="wiki-page">notes_SALVIAS</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href=":http://salvias.net/Documents/salvias_data_dictionary.html#Plot_data/notes"><img src="_" style="font-size: small;" title="SALVIAS" alt="SALVIAS" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#notes"><img src="_" style="font-size: small;" title="?notes" alt="?notes" /></a><a href="#notes_SALVIAS" class="wiki-anchor">¶</a></h3> |
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743 |
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744 |
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745 |
<a name="fieldNotes"></a> |
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746 |
<h2 style="padding-left:2em;"><a href="#fieldNotes" class="wiki-page">?fieldNotes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="AMBIGUOUS" alt="AMBIGUOUS" /><a href="#fieldNotes" class="wiki-anchor">¶</a></h2> |
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747 |
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748 |
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749 |
<a name="Alternative-fieldNotes_DwC_curatorial"></a> |
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750 |
<h3 style="padding-left:5em;">Alternative: <a href="#fieldNotes_DwC_curatorial" class="wiki-page">fieldNotes_DwC_curatorial</a><a href="#Alternative-fieldNotes_DwC_curatorial" class="wiki-anchor">¶</a></h3> |
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751 |
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752 |
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753 |
<a name="Alternative-fieldNotes_DwC_terms"></a> |
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754 |
<h3 style="padding-left:5em;">Alternative: <a href="#fieldNotes_DwC_terms" class="wiki-page">fieldNotes_DwC_terms</a><a href="#Alternative-fieldNotes_DwC_terms" class="wiki-anchor">¶</a></h3> |
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755 |
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756 |
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757 |
<a name="notes"></a> |
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758 |
<h2 style="padding-left:2em;"><a href="#notes" class="wiki-page">?notes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="AMBIGUOUS" alt="AMBIGUOUS" /><a href="#notes" class="wiki-anchor">¶</a></h2> |
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759 |
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760 |
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761 |
<a name="Alternative-notes_SALVIAS"></a> |
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762 |
<h3 style="padding-left:5em;">Alternative: <a href="#notes_SALVIAS" class="wiki-page">notes_SALVIAS</a><a href="#Alternative-notes_SALVIAS" class="wiki-anchor">¶</a></h3> |
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763 |
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764 |
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765 |
<a name="Alternative-notes_Madidi"></a> |
|
766 |
<h3 style="padding-left:5em;">Alternative: <a href="#notes_Madidi" class="wiki-page">notes_Madidi</a><a href="#Alternative-notes_Madidi" class="wiki-anchor">¶</a></h3> |
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767 |
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768 |
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729 | 769 |
<a name="recordedBy"></a> |
730 | 770 |
<h2 style="padding-left:2em;"><a href="#recordedBy" class="wiki-page">recordedBy</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/#recordedBy"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a><a href="#recordedBy" class="wiki-anchor">¶</a></h2> |
731 | 771 |
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... | ... | |
3435 | 3475 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#stemLianaInfestation" class="wiki-page">stemLianaInfestation</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://salvias.net/Documents/salvias_data_dictionary.html#Plot_data/stem_liana_infestation"><img src="_" style="font-size: small;" title="SALVIAS" alt="SALVIAS" /></a><a href="#stemLianaInfestation" class="wiki-anchor">¶</a></h3> |
3436 | 3476 |
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3437 | 3477 |
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3438 |
<a name="organismNotes"></a> |
|
3439 |
<h2 style="padding-left:2em;"><a href="#organismNotes" class="wiki-page">organismNotes</a><a href="#organismNotes" class="wiki-anchor">¶</a></h2> |
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3440 |
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3441 |
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3442 |
<a name="fieldNotes_DwC_curatorial"></a> |
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3443 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#fieldNotes_DwC_curatorial" class="wiki-page">fieldNotes_DwC_curatorial</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/history/index.htm#FieldNotes-2007-04-17"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#fieldNotes"><img src="_" style="font-size: small;" title="?fieldNotes" alt="?fieldNotes" /></a><a href="#fieldNotes_DwC_curatorial" class="wiki-anchor">¶</a></h3> |
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3444 |
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3445 |
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3446 |
<a name="remarks"></a> |
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3447 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#remarks" class="wiki-page">remarks</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/history/index.htm#Remarks-2003-06-17"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a><a href="#remarks" class="wiki-anchor">¶</a></h3> |
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3448 |
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3449 |
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3450 |
<a name="notes_SALVIAS"></a> |
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3451 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#notes_SALVIAS" class="wiki-page">notes_SALVIAS</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href=":http://salvias.net/Documents/salvias_data_dictionary.html#Plot_data/notes"><img src="_" style="font-size: small;" title="SALVIAS" alt="SALVIAS" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#notes"><img src="_" style="font-size: small;" title="?notes" alt="?notes" /></a><a href="#notes_SALVIAS" class="wiki-anchor">¶</a></h3> |
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3452 |
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3453 |
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3454 |
<a name="fieldNotes"></a> |
|
3455 |
<h2 style="padding-left:2em;"><a href="#fieldNotes" class="wiki-page">?fieldNotes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="AMBIGUOUS" alt="AMBIGUOUS" /><a href="#fieldNotes" class="wiki-anchor">¶</a></h2> |
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3456 |
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3457 |
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3458 |
<a name="Alternative-fieldNotes_DwC_curatorial"></a> |
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3459 |
<h3 style="padding-left:5em;">Alternative: <a href="#fieldNotes_DwC_curatorial" class="wiki-page">fieldNotes_DwC_curatorial</a><a href="#Alternative-fieldNotes_DwC_curatorial" class="wiki-anchor">¶</a></h3> |
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3460 |
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3461 |
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3462 |
<a name="Alternative-fieldNotes_DwC_terms"></a> |
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3463 |
<h3 style="padding-left:5em;">Alternative: <a href="#fieldNotes_DwC_terms" class="wiki-page">fieldNotes_DwC_terms</a><a href="#Alternative-fieldNotes_DwC_terms" class="wiki-anchor">¶</a></h3> |
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3464 |
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3465 |
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3466 |
<a name="notes"></a> |
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3467 |
<h2 style="padding-left:2em;"><a href="#notes" class="wiki-page">?notes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="AMBIGUOUS" alt="AMBIGUOUS" /><a href="#notes" class="wiki-anchor">¶</a></h2> |
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3468 |
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3469 |
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3470 |
<a name="Alternative-notes_SALVIAS"></a> |
|
3471 |
<h3 style="padding-left:5em;">Alternative: <a href="#notes_SALVIAS" class="wiki-page">notes_SALVIAS</a><a href="#Alternative-notes_SALVIAS" class="wiki-anchor">¶</a></h3> |
|
3472 |
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3473 |
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3474 |
<a name="Alternative-notes_Madidi"></a> |
|
3475 |
<h3 style="padding-left:5em;">Alternative: <a href="#notes_Madidi" class="wiki-page">notes_Madidi</a><a href="#Alternative-notes_Madidi" class="wiki-anchor">¶</a></h3> |
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3476 |
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3477 |
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3478 | 3478 |
<a name="Stem"></a> |
3479 | 3479 |
<h1 ><a href="#Stem" class="wiki-page">Stem</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/CTFS#Stem"><img src="_" style="font-size: small;" title="CTFS" alt="CTFS" /></a><a href="#Stem" class="wiki-anchor">¶</a></h1> |
3480 | 3480 |
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mappings/VegCore.thesaurus.csv | ||
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21 | 21 |
?distanceToStateProvince,"?distanceToStateProvince_m,distanceToStateProvince_km" |
22 | 22 |
?elevation,"?elevationInMeters,verbatimElevation,verbatimElevation_m" |
23 | 23 |
?exchangeCapacity,"?cationExchangeCapacity_cmol_kg,cationExchangeCapacity_meq_100g" |
24 |
?fieldNotes,"?organismNotes,eventRemarks"
|
|
24 |
?fieldNotes,"?occurrenceRemarks,eventRemarks"
|
|
25 | 25 |
?fieldNumber,"?collectorNumber,authorEventCode" |
26 | 26 |
?gentryDbh,"?diameterBreastHeightGentry_m,diameterBreastHeightGentry_cm,diameterBreastHeightGentry_in" |
27 | 27 |
?globalUniqueIdentifier,"?occurrenceID,dataProviderRecordID" |
... | ... | |
38 | 38 |
?minimumElevation,"?minimumElevationInMeters,minimumElevation_verbatim" |
39 | 39 |
?morphospecies,"?morphospeciesSuffix,speciesBinomialWithMorphospecies" |
40 | 40 |
?nitrogen,"?nitrogen_fraction,nitrogen_percent" |
41 |
?notes,"?organismNotes,locationRemarks"
|
|
41 |
?notes,"?occurrenceRemarks,locationRemarks"
|
|
42 | 42 |
?observationType,"?observationMeasure,observationGranularity" |
43 | 43 |
?organic,"?organic_fraction,organic_percent" |
44 | 44 |
?phosphorus,"?phosphorus_fraction,phosphorus_percent" |
... | ... | |
119 | 119 |
descriptionOfSite,locality |
120 | 120 |
detType,voucherType |
121 | 121 |
familyScore,matchedFamilyConfidence_fraction |
122 |
fieldNotes_DwC_curatorial,organismNotes
|
|
122 |
fieldNotes_DwC_curatorial,occurrenceRemarks
|
|
123 | 123 |
fieldNotes_DwC_terms,eventRemarks |
124 | 124 |
fieldNumber_DwC_classic,collectorNumber |
125 | 125 |
fieldNumber_DwC_terms,authorEventCode |
... | ... | |
158 | 158 |
morphospecies_Brad_2,speciesBinomialWithMorphospecies |
159 | 159 |
museumAccessionNumber,accessionNumber |
160 | 160 |
notes_Madidi,locationRemarks |
161 |
notes_SALVIAS,organismNotes
|
|
161 |
notes_SALVIAS,occurrenceRemarks
|
|
162 | 162 |
obsEndDate,endDate |
163 | 163 |
obsStartDate,startDate |
164 | 164 |
observationType_BIEN2,observationGranularity |
165 | 165 |
observationType_SALVIAS,observationMeasure |
166 |
organismNotes,occurrenceRemarks |
|
166 | 167 |
overallScore,matchedTaxonConfidence_fraction |
167 | 168 |
ownerInstitutionCode,specimenOwner |
168 | 169 |
phenology,reproductiveCondition |
... | ... | |
191 | 192 |
references,distributors |
192 | 193 |
relatedCatalogItem,relatedResourceID |
193 | 194 |
relationshipType,relationshipOfResource |
194 |
remarks,organismNotes
|
|
195 |
remarks,occurrenceRemarks
|
|
195 | 196 |
rightsHolder,dataOwners |
196 | 197 |
scientificNameAuthor,scientificNameAuthorship |
197 | 198 |
shapeOfSite,footprintWKT |
inputs/NY/Ecatalog_all/VegBIEN.csv | ||
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20 | 20 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
21 | 21 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
22 | 22 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
23 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/1,
|
|
24 |
PlantFungDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/2/_label[label=""plant fungus""]/value",
|
|
23 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/1,
|
|
24 |
PlantFungDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/2/_label[label=""plant fungus""]/value",
|
|
25 | 25 |
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,Usage inconsistent with DwC definition |
26 | 26 |
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
27 | 27 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
inputs/Madidi/IndividualObservation/map.csv | ||
---|---|---|
49 | 49 |
SubplotX2,*SubplotX2,, |
50 | 50 |
SubplotY2,*SubplotY2,, |
51 | 51 |
HabitName,growthForm,, |
52 |
TreeNotes,organismNotes,,
|
|
52 |
TreeNotes,occurrenceRemarks,,
|
|
53 | 53 |
DNASample,*DNASample,, |
54 | 54 |
IsAlive,*IsAlive,, |
55 | 55 |
CompoundLeaf,UNUSED,, |
inputs/Madidi/IndividualObservation/new_terms.csv | ||
---|---|---|
22 | 22 |
Diameter,diameterBreastHeight_cm,, |
23 | 23 |
TotalHeight,height_m,, |
24 | 24 |
HabitName,growthForm,, |
25 |
TreeNotes,organismNotes,, |
|
25 |
TreeNotes,occurrenceRemarks,, |
inputs/UNCC/Specimen/VegBIEN.csv | ||
---|---|---|
43 | 43 |
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
44 | 44 |
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
45 | 45 |
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
46 |
comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/1,
|
|
47 |
comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/2,
|
|
48 |
comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/3,
|
|
49 |
comment4,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/4,
|
|
50 |
campus,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/5/_label[label=""campus""]/value",
|
|
51 |
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/6/_label[label=""loaned to""]/value",
|
|
52 |
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/7/_label[label=""in or out""]/value",
|
|
46 |
comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/1,
|
|
47 |
comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/2,
|
|
48 |
comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/3,
|
|
49 |
comment4,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/4,
|
|
50 |
campus,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/5/_label[label=""campus""]/value",
|
|
51 |
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/6/_label[label=""loaned to""]/value",
|
|
52 |
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/7/_label[label=""in or out""]/value",
|
|
53 | 53 |
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
54 | 54 |
flower,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
55 | 55 |
fruit,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
inputs/CVS/taxonObservation_/map.csv | ||
---|---|---|
39 | 39 |
museum_ID,*museum_ID,, |
40 | 40 |
museumAccessionNumber,accessionNumber,, |
41 | 41 |
groupType,*groupType,, |
42 |
notes,organismNotes,,
|
|
42 |
notes,occurrenceRemarks,,
|
|
43 | 43 |
notesPublic,*notesPublic,, |
44 | 44 |
notesMgt,*notesMgt,, |
45 | 45 |
revisions,*revisions,, |
inputs/MO/Specimen/VegBIEN.csv | ||
---|---|---|
14 | 14 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
15 | 15 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
16 | 16 |
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
17 |
convertednotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
18 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
17 |
convertednotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
18 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
19 | 19 |
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
20 | 20 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
21 | 21 |
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
inputs/VegBank/taxonobservation_/VegBIEN.csv | ||
---|---|---|
13 | 13 |
interpretationdate,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value", |
14 | 14 |
taxonfit,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit", |
15 | 15 |
collectiondate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
16 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
16 |
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
17 | 17 |
collectionnumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
18 | 18 |
museumaccessionnumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
19 | 19 |
collectionnumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else", |
mappings/VegCore-VegBIEN.csv | ||
---|---|---|
165 | 165 |
intercept_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m, |
166 | 166 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m/_cm_to_m/value, |
167 | 167 |
occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1, |
168 |
organismNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2, |
|
169 | 168 |
individualCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1, |
170 | 169 |
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
171 | 170 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
inputs/HVAA/Specimen/map.csv | ||
---|---|---|
29 | 29 |
endDayOfYear,endDayOfYear,, |
30 | 30 |
verbatimEventDate,verbatimEventDate,, |
31 | 31 |
habitat,habitat,, |
32 |
fieldNotes,organismNotes,,
|
|
32 |
fieldNotes,occurrenceRemarks,,
|
|
33 | 33 |
fieldNumber,collectorNumber,, |
34 | 34 |
occurrenceRemarks,occurrenceRemarks,/_merge/1, |
35 | 35 |
dynamicProperties,occurrenceRemarks,/_merge/2,Contains occurrenceRemarks data |
inputs/HVAA/Specimen/VegBIEN.csv | ||
---|---|---|
29 | 29 |
taxonRemarks,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/notes", |
30 | 30 |
identificationQualifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit", |
31 | 31 |
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
32 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1, |
|
32 | 33 |
occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_merge/1, |
33 | 34 |
dynamicProperties,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_merge/2,Contains occurrenceRemarks data |
34 |
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2, |
|
35 | 35 |
fieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
36 | 36 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
37 | 37 |
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
inputs/XAL/Specimen/map.csv | ||
---|---|---|
45 | 45 |
darwin:PreviousCatalogNumber,otherCatalogNumbers,, |
46 | 46 |
darwin:RelationshipType,relationshipOfResource,, |
47 | 47 |
darwin:RelatedCatalogItem,relatedResourceID,, |
48 |
darwin:Notes,organismNotes,, |
|
48 |
darwin:Notes,occurrenceRemarks,, |
inputs/XAL/Specimen/VegBIEN.csv | ||
---|---|---|
17 | 17 |
darwin:MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
18 | 18 |
darwin:YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
19 | 19 |
darwin:IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
20 |
darwin:Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
20 |
darwin:Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
21 | 21 |
darwin:CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
22 | 22 |
darwin:Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
23 | 23 |
darwin:CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
inputs/XAL/Specimen/new_terms.csv | ||
---|---|---|
42 | 42 |
darwin:PreviousCatalogNumber,otherCatalogNumbers,, |
43 | 43 |
darwin:RelationshipType,relationshipOfResource,, |
44 | 44 |
darwin:RelatedCatalogItem,relatedResourceID,, |
45 |
darwin:Notes,organismNotes,, |
|
45 |
darwin:Notes,occurrenceRemarks,, |
inputs/NCU/Specimen/map.csv | ||
---|---|---|
14 | 14 |
BarCode,OMIT,,"Omitted because this isn't specified on all rows, but SpecimenPK is" |
15 | 15 |
CatalogNumber,accessionNumber,, |
16 | 16 |
CatalogSeriesPrefix,specimenHolders,/_alt/1, |
17 |
Description,organismNotes,,
|
|
17 |
Description,occurrenceRemarks,,
|
|
18 | 18 |
LandOwner,*LandOwner,, |
19 | 19 |
BlockLocationReason,*BlockLocationReason,, |
20 | 20 |
BlockSpecificLocation,*BlockSpecificLocation,, |
inputs/NCU/Specimen/VegBIEN.csv | ||
---|---|---|
17 | 17 |
VerbatimLocality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/2/_alt/1, |
18 | 18 |
CityLocality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/2/_alt/2, |
19 | 19 |
CollectionDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1, |
20 |
Description,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
20 |
Description,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
21 | 21 |
firstCollectorRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,"Actually the collector's number, not remarks" |
22 | 22 |
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
23 | 23 |
CollectionGUID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2, |
inputs/NCU/Specimen/new_terms.csv | ||
---|---|---|
6 | 6 |
CurrentScientificNameWithAuthor,scientificName,, |
7 | 7 |
CollectionDate,dateCollected,, |
8 | 8 |
CatalogSeriesPrefix,specimenHolders,/_alt/1, |
9 |
Description,organismNotes,,
|
|
9 |
Description,occurrenceRemarks,,
|
|
10 | 10 |
CityLocality,verbatimLocality,/_alt/2, |
11 | 11 |
Latitude1,decimalLatitude,, |
12 | 12 |
Longitude1,decimalLongitude,, |
inputs/TEX/Specimen/map.csv | ||
---|---|---|
30 | 30 |
ELEVATION,verbatimElevation,, |
31 | 31 |
ECOLOGICAL INFORMATION,habitat,, |
32 | 32 |
UTM,*UTM,, |
33 |
SPECIMEN NOTES,organismNotes,,
|
|
33 |
SPECIMEN NOTES,occurrenceRemarks,,
|
|
34 | 34 |
DET NOTES,identificationRemarks,, |
35 | 35 |
DATA ENTRY BY,*DATA ENTRY BY,, |
36 | 36 |
DATA ENTRY DATE,*DATA ENTRY DATE,, |
inputs/TEX/Specimen/VegBIEN.csv | ||
---|---|---|
10 | 10 |
ECOLOGICAL INFORMATION,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3, |
11 | 11 |
COLL. DATE (EXACT),/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/1, |
12 | 12 |
COLL. DATE (GENERAL),/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/2, |
13 |
SPECIMEN NOTES,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
13 |
SPECIMEN NOTES,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
14 | 14 |
COLLECTOR NUMBER,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
15 | 15 |
PHENOLOGY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition, |
16 | 16 |
ACCESSION NO.,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
inputs/TEX/Specimen/new_terms.csv | ||
---|---|---|
16 | 16 |
LONG SECONDS,longitude_sec,, |
17 | 17 |
LOCATION,locality,, |
18 | 18 |
ECOLOGICAL INFORMATION,habitat,, |
19 |
SPECIMEN NOTES,organismNotes,,
|
|
19 |
SPECIMEN NOTES,occurrenceRemarks,,
|
|
20 | 20 |
DET NOTES,identificationRemarks,, |
21 | 21 |
DATA EDITED DATE,modified,, |
inputs/TEX/Specimen2/map.csv | ||
---|---|---|
13 | 13 |
COUNTY,county,, |
14 | 14 |
LOCALITY,locality,, |
15 | 15 |
VEGETATION,habitat,, |
16 |
PLANT DATA,organismNotes,,
|
|
16 |
PLANT DATA,occurrenceRemarks,,
|
|
17 | 17 |
ELEVATION,verbatimElevation,, |
18 | 18 |
LATITUDE,latitude_DMS,, |
19 | 19 |
LONGITUDE,longitude_DMS,, |
inputs/TEX/Specimen2/VegBIEN.csv | ||
---|---|---|
8 | 8 |
EXACT DATE,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/1, |
9 | 9 |
GENERAL DATE,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/2, |
10 | 10 |
MISC NOTES,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1, |
11 |
PLANT DATA,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
11 |
PLANT DATA,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
12 | 12 |
COLLECTOR NUMBER,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
13 | 13 |
PHENOLOGY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition, |
14 | 14 |
HERBARIUM,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
inputs/TEX/Specimen2/new_terms.csv | ||
---|---|---|
1 | 1 |
HERBARIUM,collection,, |
2 | 2 |
SPECIES AUTHORITY,scientificNameAuthorship,, |
3 | 3 |
VEGETATION,habitat,, |
4 |
PLANT DATA,organismNotes,,
|
|
4 |
PLANT DATA,occurrenceRemarks,,
|
|
5 | 5 |
EXACT DATE,dateCollected,/_alt/1, |
6 | 6 |
GENERAL DATE,dateCollected,/_alt/2, |
7 | 7 |
COLLECTOR 1 FIRST NAME,recordedBy,/_join/1/_join_words/1, |
inputs/BRIT/specimen_flat/map.csv | ||
---|---|---|
36 | 36 |
Habitat_Description,habitat,/_join/1, |
37 | 37 |
Habitat_Summary,habitat,/_join/2, |
38 | 38 |
Soil_Description,*Soil_Description,, |
39 |
Notes_Plant,organismNotes,,
|
|
39 |
Notes_Plant,occurrenceRemarks,,
|
|
40 | 40 |
Phenology_Stage,reproductiveCondition,, |
41 | 41 |
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values |
42 | 42 |
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values |
inputs/BRIT/specimen_flat/VegBIEN.csv | ||
---|---|---|
26 | 26 |
Day_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
27 | 27 |
Month_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
28 | 28 |
Year_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
29 |
Notes_Plant,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
29 |
Notes_Plant,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
30 | 30 |
Collection_Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
31 | 31 |
Phenology_Stage,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition, |
32 | 32 |
Catalog_Number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
inputs/BRIT/specimen_flat/new_terms.csv | ||
---|---|---|
21 | 21 |
Locality_Site_Specific,locality,/_join/3, |
22 | 22 |
Habitat_Description,habitat,/_join/1, |
23 | 23 |
Habitat_Summary,habitat,/_join/2, |
24 |
Notes_Plant,organismNotes,,
|
|
24 |
Notes_Plant,occurrenceRemarks,,
|
|
25 | 25 |
Phenology_Stage,reproductiveCondition,, |
26 | 26 |
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values |
27 | 27 |
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values |
inputs/SALVIAS/plotObservations/map.csv | ||
---|---|---|
64 | 64 |
canopy_position,canopyPosition,, |
65 | 65 |
canopy_form,canopyForm,, |
66 | 66 |
liana_infestation,lianaInfestation,, |
67 |
Notes,organismNotes,,
|
|
67 |
Notes,occurrenceRemarks,,
|
|
68 | 68 |
tmp_PlotObsID,*tmp_PlotObsID,, |
69 | 69 |
temp_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension" |
70 | 70 |
temp_liandbh,*temp_liandbh,, |
inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
---|---|---|
60 | 60 |
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value, |
61 | 61 |
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not." |
62 | 62 |
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m/_cm_to_m/value,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance." |
63 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
63 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
64 | 64 |
Ind,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
65 | 65 |
coll_number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/1,Brad: Map instead as for voucher_string |
66 | 66 |
SourceVoucher,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
inputs/U/Specimen/map.csv | ||
---|---|---|
29 | 29 |
Alt2,*Alt2,,What is this? |
30 | 30 |
Ecology,habitat,, |
31 | 31 |
Phenology,reproductiveCondition,, |
32 |
Notes,organismNotes,, |
|
32 |
Notes,occurrenceRemarks,, |
inputs/U/Specimen/VegBIEN.csv | ||
---|---|---|
16 | 16 |
Colldd,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
17 | 17 |
Collmm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
18 | 18 |
Collyy,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
19 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
19 |
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
20 | 20 |
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
21 | 21 |
Phenology,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition, |
22 | 22 |
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
inputs/SpeciesLink/Specimen/map.csv | ||
---|---|---|
143 | 143 |
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,, |
144 | 144 |
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,, |
145 | 145 |
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,, |
146 |
conceptual_darwin_2003_1_0_Notes,organismNotes,, |
|
146 |
conceptual_darwin_2003_1_0_Notes,occurrenceRemarks,, |
inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
---|---|---|
63 | 63 |
conceptual_darwin_2003_1_0_IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
64 | 64 |
dwc_curatorial_IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
65 | 65 |
dwc_terms_individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
66 |
conceptual_darwin_2003_1_0_Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1, |
|
66 | 67 |
dwc_terms_occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1, |
67 |
conceptual_darwin_2003_1_0_Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2, |
|
68 | 68 |
dwc_terms_recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/1, |
69 | 69 |
conceptual_darwin_2003_1_0_FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec) |
70 | 70 |
----- |
inputs/SpeciesLink/Specimen/new_terms.csv | ||
---|---|---|
142 | 142 |
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,, |
143 | 143 |
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,, |
144 | 144 |
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,, |
145 |
conceptual_darwin_2003_1_0_Notes,organismNotes,, |
|
145 |
conceptual_darwin_2003_1_0_Notes,occurrenceRemarks,, |
inputs/NY/Ecatalog_all/map.csv | ||
---|---|---|
48 | 48 |
PreviousCatalogNumber,otherCatalogNumbers,, |
49 | 49 |
RelationshipType,relationshipOfResource,, |
50 | 50 |
RelatedCatalogItem,relatedResourceID,, |
51 |
Notes,organismNotes,/_join/1,
|
|
51 |
Notes,occurrenceRemarks,/_join/1,
|
|
52 | 52 |
Habitat,habitat,, |
53 |
PlantFungDescription,organismNotes,"/_join/2/_label[label=""plant fungus""]/value",
|
|
53 |
PlantFungDescription,occurrenceRemarks,"/_join/2/_label[label=""plant fungus""]/value",
|
|
54 | 54 |
Substrate,locality,"/_join/2/_label[label=""substrate""]/value", |
55 | 55 |
Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value", |
56 | 56 |
UniqueNYInternalRecordNumber,OMIT,,Sometimes duplicated. Omitted to avoid confusion since this is an internal-only ID. |
inputs/NY/Ecatalog_all/new_terms.csv | ||
---|---|---|
1 | 1 |
pkey,OMIT,,"CatalogNumber, etc. is a better pkey" |
2 | 2 |
key,OMIT,,"CatalogNumber, etc. is a better pkey" |
3 |
PlantFungDescription,organismNotes,"/_join/2/_label[label=""plant fungus""]/value",
|
|
3 |
PlantFungDescription,occurrenceRemarks,"/_join/2/_label[label=""plant fungus""]/value",
|
|
4 | 4 |
Substrate,locality,"/_join/2/_label[label=""substrate""]/value", |
5 | 5 |
Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value", |
6 | 6 |
UniqueNYInternalRecordNumber,OMIT,,Sometimes duplicated. Omitted to avoid confusion since this is an internal-only ID. |
inputs/Madidi/IndividualObservation/VegBIEN.csv | ||
---|---|---|
23 | 23 |
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
24 | 24 |
PlotInventoryName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authoreventcode", |
25 | 25 |
CurrentDetQualifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit", |
26 |
TreeNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
|
|
26 |
TreeNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
|
|
27 | 27 |
Tree,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1, |
28 | 28 |
CollectionNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2, |
29 | 29 |
SpecimenID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else", |
inputs/UNCC/Specimen/map.csv | ||
---|---|---|
28 | 28 |
country,country,, |
29 | 29 |
state,stateProvince,, |
30 | 30 |
county,county,, |
31 |
campus,organismNotes,"/_join/5/_label[label=""campus""]/value",
|
|
31 |
campus,occurrenceRemarks,"/_join/5/_label[label=""campus""]/value",
|
|
32 | 32 |
leaves,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
33 | 33 |
flower,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
34 | 34 |
fruit,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
35 | 35 |
root,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
36 | 36 |
locality,locality,, |
37 | 37 |
habitat,habitat,, |
38 |
comment1,organismNotes,/_join/1,
|
|
39 |
comment2,organismNotes,/_join/2,
|
|
40 |
comment3,organismNotes,/_join/3,
|
|
41 |
comment4,organismNotes,/_join/4,
|
|
42 |
loanto,organismNotes,"/_join/6/_label[label=""loaned to""]/value",
|
|
43 |
inorout,organismNotes,"/_join/7/_label[label=""in or out""]/value",
|
|
38 |
comment1,occurrenceRemarks,/_join/1,
|
|
39 |
comment2,occurrenceRemarks,/_join/2,
|
|
40 |
comment3,occurrenceRemarks,/_join/3,
|
|
41 |
comment4,occurrenceRemarks,/_join/4,
|
|
42 |
loanto,occurrenceRemarks,"/_join/6/_label[label=""loaned to""]/value",
|
|
43 |
inorout,occurrenceRemarks,"/_join/7/_label[label=""in or out""]/value",
|
|
44 | 44 |
sheetno,associatedMedia,,? |
45 | 45 |
cultivated,cultivated,,Ignore other values |
46 | 46 |
filler,*filler,,"Where used, same as family" |
inputs/UNCC/Specimen/new_terms.csv | ||
---|---|---|
10 | 10 |
collmonth,monthCollected,, |
11 | 11 |
collday,dayCollected,, |
12 | 12 |
collyear,yearCollected,, |
13 |
campus,organismNotes,"/_join/5/_label[label=""campus""]/value",
|
|
13 |
campus,occurrenceRemarks,"/_join/5/_label[label=""campus""]/value",
|
|
14 | 14 |
leaves,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
15 | 15 |
flower,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
16 | 16 |
fruit,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
17 | 17 |
root,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?" |
18 |
comment1,organismNotes,/_join/1,
|
|
19 |
comment2,organismNotes,/_join/2,
|
|
20 |
comment3,organismNotes,/_join/3,
|
|
21 |
comment4,organismNotes,/_join/4,
|
|
22 |
loanto,organismNotes,"/_join/6/_label[label=""loaned to""]/value",
|
|
23 |
inorout,organismNotes,"/_join/7/_label[label=""in or out""]/value",
|
|
18 |
comment1,occurrenceRemarks,/_join/1,
|
|
19 |
comment2,occurrenceRemarks,/_join/2,
|
|
20 |
comment3,occurrenceRemarks,/_join/3,
|
|
21 |
comment4,occurrenceRemarks,/_join/4,
|
|
22 |
loanto,occurrenceRemarks,"/_join/6/_label[label=""loaned to""]/value",
|
|
23 |
inorout,occurrenceRemarks,"/_join/7/_label[label=""in or out""]/value",
|
|
24 | 24 |
sheetno,associatedMedia,,? |
inputs/MO/Specimen/map.csv | ||
---|---|---|
28 | 28 |
MinimumElevation,minimumElevationInMeters,, |
29 | 29 |
MaximumElevation,maximumElevationInMeters,, |
30 | 30 |
IndividualCount,individualCount,, |
31 |
notes,organismNotes,, |
|
32 |
convertednotes,organismNotes,, |
|
31 |
notes,occurrenceRemarks,, |
|
32 |
convertednotes,occurrenceRemarks,, |
inputs/VegBank/taxonobservation_/map.csv | ||
---|---|---|
33 | 33 |
museum_id,*museum_id,, |
34 | 34 |
museumaccessionnumber,accessionNumber,, |
35 | 35 |
grouptype,*grouptype,, |
36 |
notes,organismNotes,,
|
|
36 |
notes,occurrenceRemarks,,
|
|
37 | 37 |
notespublic,*notespublic,, |
38 | 38 |
notesmgt,*notesmgt,, |
39 | 39 |
revisions,*revisions,, |
mappings/VegX-VegCore.csv | ||
---|---|---|
6 | 6 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium,"?potassium_fraction,potassium_percent" |
7 | 7 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,communityID |
8 | 8 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,communityName |
9 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,organismNotes
|
|
9 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,occurrenceRemarks
|
|
10 | 10 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,individualCount |
11 | 11 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,stemNotes |
12 | 12 |
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],tag |
mappings/for_review/VegCore-VegBIEN.csv | ||
---|---|---|
165 | 165 |
intercept_m,//aggregateoccurrence/linecover_m, |
166 | 166 |
intercept_cm,//aggregateoccurrence/linecover_m/_cm_to_m/value, |
167 | 167 |
occurrenceRemarks,//aggregateoccurrence/notes, |
168 |
organismNotes,//aggregateoccurrence/notes, |
|
169 | 168 |
individualCode,//plantobservation/authorplantcode, |
170 | 169 |
collectorNumber,//plantobservation/authorplantcode, |
171 | 170 |
sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
Also available in: Unified diff
mappings/VegCore.htm: Regenerated from wiki. Remapped organismNotes to be a synonym of occurrenceRemarks, since notes on an organism are more generally notes on an occurrence.