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Revision 7716

mappings/VegCore.htm: Regenerated from wiki. Remapped organismNotes to be a synonym of occurrenceRemarks, since notes on an organism are more generally notes on an occurrence.

View differences:

inputs/CVS/taxonObservation_/VegBIEN.csv
13 13
interpretationDate,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
14 14
taxonFit,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
15 15
collectionDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
16
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
16
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
17 17
collectionNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
18 18
museumAccessionNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
19 19
collectionNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
inputs/MO/Specimen/new_terms.csv
1
convertednotes,organismNotes,,
1
convertednotes,occurrenceRemarks,,
mappings/VegCore.htm
6 6
<meta name="description" content="Redmine" />
7 7
<meta name="keywords" content="issue,bug,tracker" />
8 8
<meta content="authenticity_token" name="csrf-param" />
9
<meta content="7M6YE76M81IwyE9fgpn8kWs5FUVNy0X2cRi0P9Ve2pA=" name="csrf-token" />
9
<meta content="shzNu0PeoOYwJSxVAWk3gtNTWMlsEuEHuPRUfgCkyJk=" name="csrf-token" />
10 10
<link rel='shortcut icon' href='/nceas/favicon.ico?1347421715' />
11 11
<link href="/nceas/stylesheets/jquery/jquery-ui-1.8.21.css?1357775071" media="all" rel="stylesheet" type="text/css" />
12 12
<link href="/nceas/stylesheets/application.css?1357775071" media="all" rel="stylesheet" type="text/css" />
......
113 113
</li><li><a href="#Occurrence">Occurrence</a><ul><li><ul><li><a href="#Observation_VegCore">Observation_VegCore</a></li></ul>
114 114
</li><li><a href="#occurrenceID">occurrenceID</a><ul><li><a href="#globalUniqueIdentifier_DwC">globalUniqueIdentifier_DwC</a></li></ul>
115 115
</li><li><a href="#globalUniqueIdentifier">?globalUniqueIdentifier</a><ul><li><a href="#Alternative-globalUniqueIdentifier_DwC">Alternative: globalUniqueIdentifier_DwC</a></li><li><a href="#Alternative-globalUniqueIdentifier_SpeciesLink">Alternative: globalUniqueIdentifier_SpeciesLink</a></li></ul>
116
</li><li><a href="#basisOfRecord">basisOfRecord</a></li><li><a href="#occurrenceRemarks">occurrenceRemarks</a></li><li><a href="#recordedBy">recordedBy</a><ul><li><a href="#collector">collector</a></li></ul>
116
</li><li><a href="#basisOfRecord">basisOfRecord</a></li><li><a href="#occurrenceRemarks">occurrenceRemarks</a><ul><li><a href="#organismNotes">organismNotes</a></li><li><a href="#fieldNotes_DwC_curatorial">fieldNotes_DwC_curatorial</a></li><li><a href="#remarks">remarks</a></li><li><a href="#notes_SALVIAS">notes_SALVIAS</a></li></ul>
117
</li><li><a href="#fieldNotes">?fieldNotes</a><ul><li><a href="#Alternative-fieldNotes_DwC_curatorial">Alternative: fieldNotes_DwC_curatorial</a></li><li><a href="#Alternative-fieldNotes_DwC_terms">Alternative: fieldNotes_DwC_terms</a></li></ul>
118
</li><li><a href="#notes">?notes</a><ul><li><a href="#Alternative-notes_SALVIAS">Alternative: notes_SALVIAS</a></li><li><a href="#Alternative-notes_Madidi">Alternative: notes_Madidi</a></li></ul>
119
</li><li><a href="#recordedBy">recordedBy</a><ul><li><a href="#collector">collector</a></li></ul>
117 120
</li><li><a href="#recordedBy_givenName">recordedBy_givenName</a></li><li><a href="#recordedBy_middleName">recordedBy_middleName</a></li><li><a href="#recordedBy_surName">recordedBy_surName</a></li><li><a href="#associatedMedia">associatedMedia</a></li><li><a href="#associatedReferences">associatedReferences</a></li><li><a href="#associatedOccurrences">associatedOccurrences</a></li><li><a href="#associatedSequences">associatedSequences</a></li></ul>
118 121
</li><li><a href="#Observation">?Observation</a><ul><li><ul><li><a href="#Alternative-Observation_VegCore">Alternative: Observation_VegCore</a></li><li><a href="#Alternative-Observation_VegBank">Alternative: Observation_VegBank</a></li></ul>
119 122
</li></ul>
......
274 277
</li><li><a href="#canopyForm">canopyForm</a><ul><li><a href="#stemCanopyForm">stemCanopyForm</a></li></ul>
275 278
</li><li><a href="#canopyPosition">canopyPosition</a><ul><li><a href="#stemCanopyPosition">stemCanopyPosition</a></li></ul>
276 279
</li><li><a href="#lianaInfestation">lianaInfestation</a><ul><li><a href="#stemLianaInfestation">stemLianaInfestation</a></li></ul>
277
</li><li><a href="#organismNotes">organismNotes</a><ul><li><a href="#fieldNotes_DwC_curatorial">fieldNotes_DwC_curatorial</a></li><li><a href="#remarks">remarks</a></li><li><a href="#notes_SALVIAS">notes_SALVIAS</a></li></ul>
278
</li><li><a href="#fieldNotes">?fieldNotes</a><ul><li><a href="#Alternative-fieldNotes_DwC_curatorial">Alternative: fieldNotes_DwC_curatorial</a></li><li><a href="#Alternative-fieldNotes_DwC_terms">Alternative: fieldNotes_DwC_terms</a></li></ul>
279
</li><li><a href="#notes">?notes</a><ul><li><a href="#Alternative-notes_SALVIAS">Alternative: notes_SALVIAS</a></li><li><a href="#Alternative-notes_Madidi">Alternative: notes_Madidi</a></li></ul>
280 280
</li></ul>
281 281
</li><li><a href="#Stem">Stem</a><ul><li><ul><li><a href="#StemLocation">StemLocation</a></li></ul>
282 282
</li><li><a href="#stemID">stemID</a></li><li><a href="#stemTag">stemTag</a><ul><li><a href="#stemTag2">stemTag2</a></li></ul>
......
726 726
<h2  style="padding-left:2em;"><a href="#occurrenceRemarks" class="wiki-page">occurrenceRemarks</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/#occurrenceRemarks"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a><a href="#occurrenceRemarks" class="wiki-anchor">&para;</a></h2>
727 727

  
728 728

  
729
	<a name="organismNotes"></a>
730
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#organismNotes" class="wiki-page">organismNotes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/individualOrganismObservations/individualOrganismObservation/note"><img src="_" style="font-size: small;" title="VegX" alt="VegX" /></a><a href="#organismNotes" class="wiki-anchor">&para;</a></h3>
731

  
732

  
733
	<a name="fieldNotes_DwC_curatorial"></a>
734
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#fieldNotes_DwC_curatorial" class="wiki-page">fieldNotes_DwC_curatorial</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/history/index.htm#FieldNotes-2007-04-17"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#fieldNotes"><img src="_" style="font-size: small;" title="?fieldNotes" alt="?fieldNotes" /></a><a href="#fieldNotes_DwC_curatorial" class="wiki-anchor">&para;</a></h3>
735

  
736

  
737
	<a name="remarks"></a>
738
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#remarks" class="wiki-page">remarks</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/history/index.htm#Remarks-2003-06-17"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a><a href="#remarks" class="wiki-anchor">&para;</a></h3>
739

  
740

  
741
	<a name="notes_SALVIAS"></a>
742
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#notes_SALVIAS" class="wiki-page">notes_SALVIAS</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href=":http://salvias.net/Documents/salvias_data_dictionary.html#Plot_data/notes"><img src="_" style="font-size: small;" title="SALVIAS" alt="SALVIAS" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#notes"><img src="_" style="font-size: small;" title="?notes" alt="?notes" /></a><a href="#notes_SALVIAS" class="wiki-anchor">&para;</a></h3>
743

  
744

  
745
	<a name="fieldNotes"></a>
746
<h2  style="padding-left:2em;"><a href="#fieldNotes" class="wiki-page">?fieldNotes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="AMBIGUOUS" alt="AMBIGUOUS" /><a href="#fieldNotes" class="wiki-anchor">&para;</a></h2>
747

  
748

  
749
	<a name="Alternative-fieldNotes_DwC_curatorial"></a>
750
<h3  style="padding-left:5em;">Alternative: <a href="#fieldNotes_DwC_curatorial" class="wiki-page">fieldNotes_DwC_curatorial</a><a href="#Alternative-fieldNotes_DwC_curatorial" class="wiki-anchor">&para;</a></h3>
751

  
752

  
753
	<a name="Alternative-fieldNotes_DwC_terms"></a>
754
<h3  style="padding-left:5em;">Alternative: <a href="#fieldNotes_DwC_terms" class="wiki-page">fieldNotes_DwC_terms</a><a href="#Alternative-fieldNotes_DwC_terms" class="wiki-anchor">&para;</a></h3>
755

  
756

  
757
	<a name="notes"></a>
758
<h2  style="padding-left:2em;"><a href="#notes" class="wiki-page">?notes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="AMBIGUOUS" alt="AMBIGUOUS" /><a href="#notes" class="wiki-anchor">&para;</a></h2>
759

  
760

  
761
	<a name="Alternative-notes_SALVIAS"></a>
762
<h3  style="padding-left:5em;">Alternative: <a href="#notes_SALVIAS" class="wiki-page">notes_SALVIAS</a><a href="#Alternative-notes_SALVIAS" class="wiki-anchor">&para;</a></h3>
763

  
764

  
765
	<a name="Alternative-notes_Madidi"></a>
766
<h3  style="padding-left:5em;">Alternative: <a href="#notes_Madidi" class="wiki-page">notes_Madidi</a><a href="#Alternative-notes_Madidi" class="wiki-anchor">&para;</a></h3>
767

  
768

  
729 769
	<a name="recordedBy"></a>
730 770
<h2  style="padding-left:2em;"><a href="#recordedBy" class="wiki-page">recordedBy</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/#recordedBy"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a><a href="#recordedBy" class="wiki-anchor">&para;</a></h2>
731 771

  
......
3435 3475
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#stemLianaInfestation" class="wiki-page">stemLianaInfestation</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://salvias.net/Documents/salvias_data_dictionary.html#Plot_data/stem_liana_infestation"><img src="_" style="font-size: small;" title="SALVIAS" alt="SALVIAS" /></a><a href="#stemLianaInfestation" class="wiki-anchor">&para;</a></h3>
3436 3476

  
3437 3477

  
3438
	<a name="organismNotes"></a>
3439
<h2  style="padding-left:2em;"><a href="#organismNotes" class="wiki-page">organismNotes</a><a href="#organismNotes" class="wiki-anchor">&para;</a></h2>
3440

  
3441

  
3442
	<a name="fieldNotes_DwC_curatorial"></a>
3443
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#fieldNotes_DwC_curatorial" class="wiki-page">fieldNotes_DwC_curatorial</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/history/index.htm#FieldNotes-2007-04-17"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#fieldNotes"><img src="_" style="font-size: small;" title="?fieldNotes" alt="?fieldNotes" /></a><a href="#fieldNotes_DwC_curatorial" class="wiki-anchor">&para;</a></h3>
3444

  
3445

  
3446
	<a name="remarks"></a>
3447
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#remarks" class="wiki-page">remarks</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/history/index.htm#Remarks-2003-06-17"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a><a href="#remarks" class="wiki-anchor">&para;</a></h3>
3448

  
3449

  
3450
	<a name="notes_SALVIAS"></a>
3451
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#notes_SALVIAS" class="wiki-page">notes_SALVIAS</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href=":http://salvias.net/Documents/salvias_data_dictionary.html#Plot_data/notes"><img src="_" style="font-size: small;" title="SALVIAS" alt="SALVIAS" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#notes"><img src="_" style="font-size: small;" title="?notes" alt="?notes" /></a><a href="#notes_SALVIAS" class="wiki-anchor">&para;</a></h3>
3452

  
3453

  
3454
	<a name="fieldNotes"></a>
3455
<h2  style="padding-left:2em;"><a href="#fieldNotes" class="wiki-page">?fieldNotes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="AMBIGUOUS" alt="AMBIGUOUS" /><a href="#fieldNotes" class="wiki-anchor">&para;</a></h2>
3456

  
3457

  
3458
	<a name="Alternative-fieldNotes_DwC_curatorial"></a>
3459
<h3  style="padding-left:5em;">Alternative: <a href="#fieldNotes_DwC_curatorial" class="wiki-page">fieldNotes_DwC_curatorial</a><a href="#Alternative-fieldNotes_DwC_curatorial" class="wiki-anchor">&para;</a></h3>
3460

  
3461

  
3462
	<a name="Alternative-fieldNotes_DwC_terms"></a>
3463
<h3  style="padding-left:5em;">Alternative: <a href="#fieldNotes_DwC_terms" class="wiki-page">fieldNotes_DwC_terms</a><a href="#Alternative-fieldNotes_DwC_terms" class="wiki-anchor">&para;</a></h3>
3464

  
3465

  
3466
	<a name="notes"></a>
3467
<h2  style="padding-left:2em;"><a href="#notes" class="wiki-page">?notes</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="AMBIGUOUS" alt="AMBIGUOUS" /><a href="#notes" class="wiki-anchor">&para;</a></h2>
3468

  
3469

  
3470
	<a name="Alternative-notes_SALVIAS"></a>
3471
<h3  style="padding-left:5em;">Alternative: <a href="#notes_SALVIAS" class="wiki-page">notes_SALVIAS</a><a href="#Alternative-notes_SALVIAS" class="wiki-anchor">&para;</a></h3>
3472

  
3473

  
3474
	<a name="Alternative-notes_Madidi"></a>
3475
<h3  style="padding-left:5em;">Alternative: <a href="#notes_Madidi" class="wiki-page">notes_Madidi</a><a href="#Alternative-notes_Madidi" class="wiki-anchor">&para;</a></h3>
3476

  
3477

  
3478 3478
	<a name="Stem"></a>
3479 3479
<h1 ><a href="#Stem" class="wiki-page">Stem</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/CTFS#Stem"><img src="_" style="font-size: small;" title="CTFS" alt="CTFS" /></a><a href="#Stem" class="wiki-anchor">&para;</a></h1>
3480 3480

  
mappings/VegCore.thesaurus.csv
21 21
?distanceToStateProvince,"?distanceToStateProvince_m,distanceToStateProvince_km"
22 22
?elevation,"?elevationInMeters,verbatimElevation,verbatimElevation_m"
23 23
?exchangeCapacity,"?cationExchangeCapacity_cmol_kg,cationExchangeCapacity_meq_100g"
24
?fieldNotes,"?organismNotes,eventRemarks"
24
?fieldNotes,"?occurrenceRemarks,eventRemarks"
25 25
?fieldNumber,"?collectorNumber,authorEventCode"
26 26
?gentryDbh,"?diameterBreastHeightGentry_m,diameterBreastHeightGentry_cm,diameterBreastHeightGentry_in"
27 27
?globalUniqueIdentifier,"?occurrenceID,dataProviderRecordID"
......
38 38
?minimumElevation,"?minimumElevationInMeters,minimumElevation_verbatim"
39 39
?morphospecies,"?morphospeciesSuffix,speciesBinomialWithMorphospecies"
40 40
?nitrogen,"?nitrogen_fraction,nitrogen_percent"
41
?notes,"?organismNotes,locationRemarks"
41
?notes,"?occurrenceRemarks,locationRemarks"
42 42
?observationType,"?observationMeasure,observationGranularity"
43 43
?organic,"?organic_fraction,organic_percent"
44 44
?phosphorus,"?phosphorus_fraction,phosphorus_percent"
......
119 119
descriptionOfSite,locality
120 120
detType,voucherType
121 121
familyScore,matchedFamilyConfidence_fraction
122
fieldNotes_DwC_curatorial,organismNotes
122
fieldNotes_DwC_curatorial,occurrenceRemarks
123 123
fieldNotes_DwC_terms,eventRemarks
124 124
fieldNumber_DwC_classic,collectorNumber
125 125
fieldNumber_DwC_terms,authorEventCode
......
158 158
morphospecies_Brad_2,speciesBinomialWithMorphospecies
159 159
museumAccessionNumber,accessionNumber
160 160
notes_Madidi,locationRemarks
161
notes_SALVIAS,organismNotes
161
notes_SALVIAS,occurrenceRemarks
162 162
obsEndDate,endDate
163 163
obsStartDate,startDate
164 164
observationType_BIEN2,observationGranularity
165 165
observationType_SALVIAS,observationMeasure
166
organismNotes,occurrenceRemarks
166 167
overallScore,matchedTaxonConfidence_fraction
167 168
ownerInstitutionCode,specimenOwner
168 169
phenology,reproductiveCondition
......
191 192
references,distributors
192 193
relatedCatalogItem,relatedResourceID
193 194
relationshipType,relationshipOfResource
194
remarks,organismNotes
195
remarks,occurrenceRemarks
195 196
rightsHolder,dataOwners
196 197
scientificNameAuthor,scientificNameAuthorship
197 198
shapeOfSite,footprintWKT
inputs/NY/Ecatalog_all/VegBIEN.csv
20 20
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
21 21
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
22 22
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
23
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/1,
24
PlantFungDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/2/_label[label=""plant fungus""]/value",
23
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/1,
24
PlantFungDescription,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/2/_label[label=""plant fungus""]/value",
25 25
FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,Usage inconsistent with DwC definition
26 26
Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
27 27
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
inputs/Madidi/IndividualObservation/map.csv
49 49
SubplotX2,*SubplotX2,,
50 50
SubplotY2,*SubplotY2,,
51 51
HabitName,growthForm,,
52
TreeNotes,organismNotes,,
52
TreeNotes,occurrenceRemarks,,
53 53
DNASample,*DNASample,,
54 54
IsAlive,*IsAlive,,
55 55
CompoundLeaf,UNUSED,,
inputs/Madidi/IndividualObservation/new_terms.csv
22 22
Diameter,diameterBreastHeight_cm,,
23 23
TotalHeight,height_m,,
24 24
HabitName,growthForm,,
25
TreeNotes,organismNotes,,
25
TreeNotes,occurrenceRemarks,,
inputs/UNCC/Specimen/VegBIEN.csv
43 43
collday,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
44 44
collmonth,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
45 45
collyear,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
46
comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/1,
47
comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/2,
48
comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/3,
49
comment4,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/4,
50
campus,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/5/_label[label=""campus""]/value",
51
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/6/_label[label=""loaned to""]/value",
52
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2/_join/7/_label[label=""in or out""]/value",
46
comment1,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/1,
47
comment2,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/2,
48
comment3,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/3,
49
comment4,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/4,
50
campus,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/5/_label[label=""campus""]/value",
51
loanto,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/6/_label[label=""loaned to""]/value",
52
inorout,"/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_join/7/_label[label=""in or out""]/value",
53 53
collectno,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
54 54
flower,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
55 55
fruit,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
inputs/CVS/taxonObservation_/map.csv
39 39
museum_ID,*museum_ID,,
40 40
museumAccessionNumber,accessionNumber,,
41 41
groupType,*groupType,,
42
notes,organismNotes,,
42
notes,occurrenceRemarks,,
43 43
notesPublic,*notesPublic,,
44 44
notesMgt,*notesMgt,,
45 45
revisions,*revisions,,
inputs/MO/Specimen/VegBIEN.csv
14 14
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
15 15
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
16 16
IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
17
convertednotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
18
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
17
convertednotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
18
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
19 19
CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
20 20
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
21 21
CollectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
inputs/VegBank/taxonobservation_/VegBIEN.csv
13 13
interpretationdate,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/determinationdate/_alt/1/_dateRangeStart/value",
14 14
taxonfit,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
15 15
collectiondate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
16
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
16
notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
17 17
collectionnumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
18 18
museumaccessionnumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
19 19
collectionnumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/else",
mappings/VegCore-VegBIEN.csv
165 165
intercept_m,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m,
166 166
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m/_cm_to_m/value,
167 167
occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
168
organismNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
169 168
individualCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1,
170 169
collectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
171 170
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
inputs/HVAA/Specimen/map.csv
29 29
endDayOfYear,endDayOfYear,,
30 30
verbatimEventDate,verbatimEventDate,,
31 31
habitat,habitat,,
32
fieldNotes,organismNotes,,
32
fieldNotes,occurrenceRemarks,,
33 33
fieldNumber,collectorNumber,,
34 34
occurrenceRemarks,occurrenceRemarks,/_merge/1,
35 35
dynamicProperties,occurrenceRemarks,/_merge/2,Contains occurrenceRemarks data
inputs/HVAA/Specimen/VegBIEN.csv
29 29
taxonRemarks,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/notes",
30 30
identificationQualifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
31 31
individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
32
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
32 33
occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_merge/1,
33 34
dynamicProperties,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1/_merge/2,Contains occurrenceRemarks data
34
fieldNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
35 35
fieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
36 36
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
37 37
sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
inputs/XAL/Specimen/map.csv
45 45
darwin:PreviousCatalogNumber,otherCatalogNumbers,,
46 46
darwin:RelationshipType,relationshipOfResource,,
47 47
darwin:RelatedCatalogItem,relatedResourceID,,
48
darwin:Notes,organismNotes,,
48
darwin:Notes,occurrenceRemarks,,
inputs/XAL/Specimen/VegBIEN.csv
17 17
darwin:MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
18 18
darwin:YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
19 19
darwin:IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
20
darwin:Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
20
darwin:Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
21 21
darwin:CollectorNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
22 22
darwin:Sex,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]:[@fkey=tablerecord_id]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
23 23
darwin:CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
inputs/XAL/Specimen/new_terms.csv
42 42
darwin:PreviousCatalogNumber,otherCatalogNumbers,,
43 43
darwin:RelationshipType,relationshipOfResource,,
44 44
darwin:RelatedCatalogItem,relatedResourceID,,
45
darwin:Notes,organismNotes,,
45
darwin:Notes,occurrenceRemarks,,
inputs/NCU/Specimen/map.csv
14 14
BarCode,OMIT,,"Omitted because this isn't specified on all rows, but SpecimenPK is"
15 15
CatalogNumber,accessionNumber,,
16 16
CatalogSeriesPrefix,specimenHolders,/_alt/1,
17
Description,organismNotes,,
17
Description,occurrenceRemarks,,
18 18
LandOwner,*LandOwner,,
19 19
BlockLocationReason,*BlockLocationReason,,
20 20
BlockSpecificLocation,*BlockSpecificLocation,,
inputs/NCU/Specimen/VegBIEN.csv
17 17
VerbatimLocality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/2/_alt/1,
18 18
CityLocality,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/2/_alt/2,
19 19
CollectionDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
20
Description,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
20
Description,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
21 21
firstCollectorRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,"Actually the collector's number, not remarks"
22 22
CatalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
23 23
CollectionGUID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/2,
inputs/NCU/Specimen/new_terms.csv
6 6
CurrentScientificNameWithAuthor,scientificName,,
7 7
CollectionDate,dateCollected,,
8 8
CatalogSeriesPrefix,specimenHolders,/_alt/1,
9
Description,organismNotes,,
9
Description,occurrenceRemarks,,
10 10
CityLocality,verbatimLocality,/_alt/2,
11 11
Latitude1,decimalLatitude,,
12 12
Longitude1,decimalLongitude,,
inputs/TEX/Specimen/map.csv
30 30
ELEVATION,verbatimElevation,,
31 31
ECOLOGICAL INFORMATION,habitat,,
32 32
UTM,*UTM,,
33
SPECIMEN NOTES,organismNotes,,
33
SPECIMEN NOTES,occurrenceRemarks,,
34 34
DET NOTES,identificationRemarks,,
35 35
DATA ENTRY BY,*DATA ENTRY BY,,
36 36
DATA ENTRY DATE,*DATA ENTRY DATE,,
inputs/TEX/Specimen/VegBIEN.csv
10 10
ECOLOGICAL INFORMATION,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3,
11 11
COLL. DATE (EXACT),/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/1,
12 12
COLL. DATE (GENERAL),/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/2,
13
SPECIMEN NOTES,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
13
SPECIMEN NOTES,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
14 14
COLLECTOR NUMBER,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
15 15
PHENOLOGY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
16 16
ACCESSION NO.,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
inputs/TEX/Specimen/new_terms.csv
16 16
LONG SECONDS,longitude_sec,,
17 17
LOCATION,locality,,
18 18
ECOLOGICAL INFORMATION,habitat,,
19
SPECIMEN NOTES,organismNotes,,
19
SPECIMEN NOTES,occurrenceRemarks,,
20 20
DET NOTES,identificationRemarks,,
21 21
DATA EDITED DATE,modified,,
inputs/TEX/Specimen2/map.csv
13 13
COUNTY,county,,
14 14
LOCALITY,locality,,
15 15
VEGETATION,habitat,,
16
PLANT DATA,organismNotes,,
16
PLANT DATA,occurrenceRemarks,,
17 17
ELEVATION,verbatimElevation,,
18 18
LATITUDE,latitude_DMS,,
19 19
LONGITUDE,longitude_DMS,,
inputs/TEX/Specimen2/VegBIEN.csv
8 8
EXACT DATE,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/1,
9 9
GENERAL DATE,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_alt/2,
10 10
MISC NOTES,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
11
PLANT DATA,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
11
PLANT DATA,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
12 12
COLLECTOR NUMBER,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
13 13
PHENOLOGY,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
14 14
HERBARIUM,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_alt/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
inputs/TEX/Specimen2/new_terms.csv
1 1
HERBARIUM,collection,,
2 2
SPECIES AUTHORITY,scientificNameAuthorship,,
3 3
VEGETATION,habitat,,
4
PLANT DATA,organismNotes,,
4
PLANT DATA,occurrenceRemarks,,
5 5
EXACT DATE,dateCollected,/_alt/1,
6 6
GENERAL DATE,dateCollected,/_alt/2,
7 7
COLLECTOR 1 FIRST NAME,recordedBy,/_join/1/_join_words/1,
inputs/BRIT/specimen_flat/map.csv
36 36
Habitat_Description,habitat,/_join/1,
37 37
Habitat_Summary,habitat,/_join/2,
38 38
Soil_Description,*Soil_Description,,
39
Notes_Plant,organismNotes,,
39
Notes_Plant,occurrenceRemarks,,
40 40
Phenology_Stage,reproductiveCondition,,
41 41
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values
42 42
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values
inputs/BRIT/specimen_flat/VegBIEN.csv
26 26
Day_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
27 27
Month_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
28 28
Year_Collected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
29
Notes_Plant,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
29
Notes_Plant,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
30 30
Collection_Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
31 31
Phenology_Stage,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
32 32
Catalog_Number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
inputs/BRIT/specimen_flat/new_terms.csv
21 21
Locality_Site_Specific,locality,/_join/3,
22 22
Habitat_Description,habitat,/_join/1,
23 23
Habitat_Summary,habitat,/_join/2,
24
Notes_Plant,organismNotes,,
24
Notes_Plant,occurrenceRemarks,,
25 25
Phenology_Stage,reproductiveCondition,,
26 26
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values
27 27
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values
inputs/SALVIAS/plotObservations/map.csv
64 64
canopy_position,canopyPosition,,
65 65
canopy_form,canopyForm,,
66 66
liana_infestation,lianaInfestation,,
67
Notes,organismNotes,,
67
Notes,occurrenceRemarks,,
68 68
tmp_PlotObsID,*tmp_PlotObsID,,
69 69
temp_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"
70 70
temp_liandbh,*temp_liandbh,,
inputs/SALVIAS/plotObservations/VegBIEN.csv
60 60
cover_percent,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
61 61
census_no,"/location/locationevent/taxonoccurrence/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=censusNo]]:[@fkey=tablerecord_id]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
62 62
intercept_cm,/location/locationevent/taxonoccurrence/aggregateoccurrence/linecover_m/_cm_to_m/value,"Brad: This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
63
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
63
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
64 64
Ind,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
65 65
coll_number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/1,Brad: Map instead as for voucher_string
66 66
SourceVoucher,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
inputs/U/Specimen/map.csv
29 29
Alt2,*Alt2,,What is this?
30 30
Ecology,habitat,,
31 31
Phenology,reproductiveCondition,,
32
Notes,organismNotes,,
32
Notes,occurrenceRemarks,,
inputs/U/Specimen/VegBIEN.csv
16 16
Colldd,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
17 17
Collmm,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
18 18
Collyy,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
19
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
19
Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
20 20
Number,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
21 21
Phenology,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/reproductivecondition,
22 22
Barcode,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
inputs/SpeciesLink/Specimen/map.csv
143 143
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,
144 144
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,
145 145
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,
146
conceptual_darwin_2003_1_0_Notes,organismNotes,,
146
conceptual_darwin_2003_1_0_Notes,occurrenceRemarks,,
inputs/SpeciesLink/Specimen/VegBIEN.csv
63 63
conceptual_darwin_2003_1_0_IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
64 64
dwc_curatorial_IndividualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
65 65
dwc_terms_individualCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count,
66
conceptual_darwin_2003_1_0_Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
66 67
dwc_terms_occurrenceRemarks,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
67
conceptual_darwin_2003_1_0_Notes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
68 68
dwc_terms_recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/1,
69 69
conceptual_darwin_2003_1_0_FieldNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
70 70
-----
inputs/SpeciesLink/Specimen/new_terms.csv
142 142
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,
143 143
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,
144 144
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,
145
conceptual_darwin_2003_1_0_Notes,organismNotes,,
145
conceptual_darwin_2003_1_0_Notes,occurrenceRemarks,,
inputs/NY/Ecatalog_all/map.csv
48 48
PreviousCatalogNumber,otherCatalogNumbers,,
49 49
RelationshipType,relationshipOfResource,,
50 50
RelatedCatalogItem,relatedResourceID,,
51
Notes,organismNotes,/_join/1,
51
Notes,occurrenceRemarks,/_join/1,
52 52
Habitat,habitat,,
53
PlantFungDescription,organismNotes,"/_join/2/_label[label=""plant fungus""]/value",
53
PlantFungDescription,occurrenceRemarks,"/_join/2/_label[label=""plant fungus""]/value",
54 54
Substrate,locality,"/_join/2/_label[label=""substrate""]/value",
55 55
Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value",
56 56
UniqueNYInternalRecordNumber,OMIT,,Sometimes duplicated. Omitted to avoid confusion since this is an internal-only ID.
inputs/NY/Ecatalog_all/new_terms.csv
1 1
pkey,OMIT,,"CatalogNumber, etc. is a better pkey"
2 2
key,OMIT,,"CatalogNumber, etc. is a better pkey"
3
PlantFungDescription,organismNotes,"/_join/2/_label[label=""plant fungus""]/value",
3
PlantFungDescription,occurrenceRemarks,"/_join/2/_label[label=""plant fungus""]/value",
4 4
Substrate,locality,"/_join/2/_label[label=""substrate""]/value",
5 5
Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value",
6 6
UniqueNYInternalRecordNumber,OMIT,,Sometimes duplicated. Omitted to avoid confusion since this is an internal-only ID.
inputs/Madidi/IndividualObservation/VegBIEN.csv
23 23
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then",
24 24
PlotInventoryName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/authoreventcode",
25 25
CurrentDetQualifier,"/location/locationevent/taxonoccurrence/_if[@name=""if has accepted name""]/then/taxondetermination:[determinationtype=accepted]/taxonfit",
26
TreeNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/2,
26
TreeNotes,/location/locationevent/taxonoccurrence/aggregateoccurrence/notes/_join/1,
27 27
Tree,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/1,
28 28
CollectionNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode/_first/2,
29 29
SpecimenID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
inputs/UNCC/Specimen/map.csv
28 28
country,country,,
29 29
state,stateProvince,,
30 30
county,county,,
31
campus,organismNotes,"/_join/5/_label[label=""campus""]/value",
31
campus,occurrenceRemarks,"/_join/5/_label[label=""campus""]/value",
32 32
leaves,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
33 33
flower,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
34 34
fruit,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
35 35
root,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
36 36
locality,locality,,
37 37
habitat,habitat,,
38
comment1,organismNotes,/_join/1,
39
comment2,organismNotes,/_join/2,
40
comment3,organismNotes,/_join/3,
41
comment4,organismNotes,/_join/4,
42
loanto,organismNotes,"/_join/6/_label[label=""loaned to""]/value",
43
inorout,organismNotes,"/_join/7/_label[label=""in or out""]/value",
38
comment1,occurrenceRemarks,/_join/1,
39
comment2,occurrenceRemarks,/_join/2,
40
comment3,occurrenceRemarks,/_join/3,
41
comment4,occurrenceRemarks,/_join/4,
42
loanto,occurrenceRemarks,"/_join/6/_label[label=""loaned to""]/value",
43
inorout,occurrenceRemarks,"/_join/7/_label[label=""in or out""]/value",
44 44
sheetno,associatedMedia,,?
45 45
cultivated,cultivated,,Ignore other values
46 46
filler,*filler,,"Where used, same as family"
inputs/UNCC/Specimen/new_terms.csv
10 10
collmonth,monthCollected,,
11 11
collday,dayCollected,,
12 12
collyear,yearCollected,,
13
campus,organismNotes,"/_join/5/_label[label=""campus""]/value",
13
campus,occurrenceRemarks,"/_join/5/_label[label=""campus""]/value",
14 14
leaves,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
15 15
flower,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
16 16
fruit,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
17 17
root,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
18
comment1,organismNotes,/_join/1,
19
comment2,organismNotes,/_join/2,
20
comment3,organismNotes,/_join/3,
21
comment4,organismNotes,/_join/4,
22
loanto,organismNotes,"/_join/6/_label[label=""loaned to""]/value",
23
inorout,organismNotes,"/_join/7/_label[label=""in or out""]/value",
18
comment1,occurrenceRemarks,/_join/1,
19
comment2,occurrenceRemarks,/_join/2,
20
comment3,occurrenceRemarks,/_join/3,
21
comment4,occurrenceRemarks,/_join/4,
22
loanto,occurrenceRemarks,"/_join/6/_label[label=""loaned to""]/value",
23
inorout,occurrenceRemarks,"/_join/7/_label[label=""in or out""]/value",
24 24
sheetno,associatedMedia,,?
inputs/MO/Specimen/map.csv
28 28
MinimumElevation,minimumElevationInMeters,,
29 29
MaximumElevation,maximumElevationInMeters,,
30 30
IndividualCount,individualCount,,
31
notes,organismNotes,,
32
convertednotes,organismNotes,,
31
notes,occurrenceRemarks,,
32
convertednotes,occurrenceRemarks,,
inputs/VegBank/taxonobservation_/map.csv
33 33
museum_id,*museum_id,,
34 34
museumaccessionnumber,accessionNumber,,
35 35
grouptype,*grouptype,,
36
notes,organismNotes,,
36
notes,occurrenceRemarks,,
37 37
notespublic,*notespublic,,
38 38
notesmgt,*notesmgt,,
39 39
revisions,*revisions,,
mappings/VegX-VegCore.csv
6 6
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/abioticObservation[*ID]/potassium,"?potassium_fraction,potassium_percent"
7 7
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,communityID
8 8
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/communityDetermination[*ID]/*s/communityConcept/name,communityName
9
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,organismNotes
9
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,occurrenceRemarks
10 10
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept->/*s/aggregateOrganismObservation[*ID]/*/aggregateValue/value,individualCount
11 11
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*ID->/*s/taxonNameUsageConcept/note/text,stemNotes
12 12
/*s/plot->/*s/plotObservation[*UniqueIdentifierID]->/*s/individualOrganismObservation[*ID]->/*s/individualOrganismObservation[relatedIndividual/relatedItem[itemRelationship=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel[@id=1],tag
mappings/for_review/VegCore-VegBIEN.csv
165 165
intercept_m,//aggregateoccurrence/linecover_m,
166 166
intercept_cm,//aggregateoccurrence/linecover_m/_cm_to_m/value,
167 167
occurrenceRemarks,//aggregateoccurrence/notes,
168
organismNotes,//aggregateoccurrence/notes,
169 168
individualCode,//plantobservation/authorplantcode,
170 169
collectorNumber,//plantobservation/authorplantcode,
171 170
sex,"//plantobservation/definedvalue[*_id/userdefined[tablename=plantobservation,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"

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