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1
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REMIB,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
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2
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accession_number,"/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
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3
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4
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[1] Using the following query:
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5
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-----
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6
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SELECT acronym, accession_number, count(*)
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7
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FROM ""REMIB"".""Specimen""
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8
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GROUP BY acronym, accession_number
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9
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HAVING count(*) > 1
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10
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-----"
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11
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acronym,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
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12
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accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
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13
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14
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[1] Using the following query:
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15
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-----
|
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16
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SELECT acronym, accession_number, count(*)
|
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17
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FROM ""REMIB"".""Specimen""
|
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18
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GROUP BY acronym, accession_number
|
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19
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HAVING count(*) > 1
|
|
20
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-----"
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21
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accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
|
22
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|
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23
|
[1] Using the following query:
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|
24
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-----
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25
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SELECT acronym, accession_number, count(*)
|
|
26
|
FROM ""REMIB"".""Specimen""
|
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27
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GROUP BY acronym, accession_number
|
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28
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HAVING count(*) > 1
|
|
29
|
-----"
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30
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acronym,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",
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31
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accession_number,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
|
32
|
|
|
33
|
[1] Using the following query:
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|
34
|
-----
|
|
35
|
SELECT acronym, accession_number, count(*)
|
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36
|
FROM ""REMIB"".""Specimen""
|
|
37
|
GROUP BY acronym, accession_number
|
|
38
|
HAVING count(*) > 1
|
|
39
|
-----"
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40
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locality,"/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
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41
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habitat,"/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/3/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
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42
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coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
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43
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coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
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44
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coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
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45
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accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
|
46
|
|
|
47
|
[1] Using the following query:
|
|
48
|
-----
|
|
49
|
SELECT acronym, accession_number, count(*)
|
|
50
|
FROM ""REMIB"".""Specimen""
|
|
51
|
GROUP BY acronym, accession_number
|
|
52
|
HAVING count(*) > 1
|
|
53
|
-----"
|
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54
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accession_number,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
|
55
|
|
|
56
|
[1] Using the following query:
|
|
57
|
-----
|
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58
|
SELECT acronym, accession_number, count(*)
|
|
59
|
FROM ""REMIB"".""Specimen""
|
|
60
|
GROUP BY acronym, accession_number
|
|
61
|
HAVING count(*) > 1
|
|
62
|
-----"
|
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63
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acronym,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",
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64
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acronym,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",
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65
|
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
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66
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
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67
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genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
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68
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family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
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69
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family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
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70
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genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2,
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71
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specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
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72
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family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
|
73
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genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
|
74
|
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
75
|
accession_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
|
76
|
|
|
77
|
[1] Using the following query:
|
|
78
|
-----
|
|
79
|
SELECT acronym, accession_number, count(*)
|
|
80
|
FROM ""REMIB"".""Specimen""
|
|
81
|
GROUP BY acronym, accession_number
|
|
82
|
HAVING count(*) > 1
|
|
83
|
-----"
|
|
84
|
locality,"/location/locationnarrative/_merge/1/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
|
85
|
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB); Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
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|
86
|
lat_deg,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_dms_to_dd/deg/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
87
|
lat_min,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_dms_to_dd/min/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
88
|
lat_sec,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_dms_to_dd/sec/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
89
|
long_deg,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_dms_to_dd/deg/_map:[./{""-999"",99,999,1000}=]/value",-99 is a valid longitude for Mexico
|
|
90
|
long_min,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_dms_to_dd/min/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
91
|
long_sec,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_dms_to_dd/sec/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
92
|
country,"/location/locationplace/*_id/place/country/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
|
93
|
county,"/location/locationplace/*_id/place/county/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
|
94
|
lat_deg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_dms_to_dd/deg/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
95
|
lat_min,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_dms_to_dd/min/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
96
|
lat_sec,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_dms_to_dd/sec/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
97
|
long_deg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_dms_to_dd/deg/_map:[./{""-999"",99,999,1000}=]/value",-99 is a valid longitude for Mexico
|
|
98
|
long_min,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_dms_to_dd/min/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
99
|
long_sec,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_dms_to_dd/sec/_map:[./{""-999"",""-99"",99,999,1000}=]/value",
|
|
100
|
country,"/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
|
101
|
county,"/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
|
102
|
state,"/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
|
|
103
|
state,"/location/locationplace/*_id/place/stateprovince/_map:[./{ND,NA}=,*=*]/value","""ND = no disponible = not available"" (https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Spot-checking#REMIB)"
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|
104
|
preparation,,** No join mapping for preparations **
|
