Revision 7749
Added by Aaron Marcuse-Kubitza almost 12 years ago
| schemas/VegBIEN/planning/taxonomy/bien3_taxonomy.sql | ||
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SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0; |
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SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0; |
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SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='TRADITIONAL'; |
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DROP SCHEMA IF EXISTS `default_schema` ; |
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CREATE SCHEMA IF NOT EXISTS `default_schema` ; |
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USE `default_schema` ; |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`reference` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`reference` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`reference` ( |
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`reference_id` INT NOT NULL , |
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PRIMARY KEY (`reference_id`) ) |
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ENGINE = InnoDB; |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxon` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxon` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxon` ( |
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`taxon_id` INT NOT NULL , |
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`taxonrank` VARCHAR(45) NOT NULL , |
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`scientificname` VARCHAR(100) NOT NULL , |
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`scientificnameauthorship` VARCHAR(150) NULL , |
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`authorship_reference_id` INT NULL , |
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PRIMARY KEY (`taxon_id`) , |
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INDEX `fk_taxon_reference2` (`authorship_reference_id` ASC) , |
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CONSTRAINT `fk_taxon_reference2` |
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FOREIGN KEY (`authorship_reference_id` ) |
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REFERENCES `default_schema`.`reference` (`reference_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = InnoDB; |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxonconcept` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxonconcept` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonconcept` ( |
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`taxonconcept_id` INT(11) NOT NULL , |
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`taxon_id` INT NOT NULL , |
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`concept_reference_id` INT NOT NULL , |
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PRIMARY KEY (`taxonconcept_id`) , |
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INDEX `fk_taxonconcept_taxon1` (`taxon_id` ASC) , |
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INDEX `fk_taxonconcept_reference1` (`concept_reference_id` ASC) , |
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CONSTRAINT `fk_taxonconcept_taxon1` |
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FOREIGN KEY (`taxon_id` ) |
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REFERENCES `default_schema`.`taxon` (`taxon_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_taxonconcept_reference1` |
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FOREIGN KEY (`concept_reference_id` ) |
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REFERENCES `default_schema`.`reference` (`reference_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION); |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxonverbatim` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxonverbatim` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonverbatim` ( |
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`taxonverbatim_id` INT NOT NULL , |
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`scientificname` VARCHAR(200) NULL DEFAULT NULL , |
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`scientificnameauthorship` VARCHAR(200) NULL DEFAULT NULL , |
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`scientificnamewithauthor` VARCHAR(250) NULL DEFAULT NULL , |
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`kingdom` VARCHAR(50) NULL DEFAULT NULL , |
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`subkingdom` VARCHAR(50) NULL DEFAULT NULL , |
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`division` VARCHAR(50) NULL DEFAULT NULL , |
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`subdivision` VARCHAR(50) NULL DEFAULT NULL , |
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`class` VARCHAR(50) NULL DEFAULT NULL , |
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`subclass` VARCHAR(50) NULL DEFAULT NULL , |
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`order` VARCHAR(50) NULL DEFAULT NULL , |
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`suborder` VARCHAR(50) NULL DEFAULT NULL , |
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`family` VARCHAR(50) NULL DEFAULT NULL , |
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`subfamily` VARCHAR(50) NULL DEFAULT NULL , |
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`tribe` VARCHAR(50) NULL DEFAULT NULL , |
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`subtribe` VARCHAR(50) NULL DEFAULT NULL , |
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`genus` VARCHAR(50) NULL DEFAULT NULL , |
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`subgenus` VARCHAR(50) NULL DEFAULT NULL , |
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`section` VARCHAR(50) NULL DEFAULT NULL , |
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`subsection` VARCHAR(50) NULL DEFAULT NULL , |
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`series` VARCHAR(50) NULL DEFAULT NULL , |
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`subseries` VARCHAR(50) NULL DEFAULT NULL , |
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`species` VARCHAR(50) NULL DEFAULT NULL , |
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`subspecies` VARCHAR(50) NULL DEFAULT NULL , |
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`variety` VARCHAR(50) NULL DEFAULT NULL , |
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`subvariety` VARCHAR(50) NULL DEFAULT NULL , |
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`form` VARCHAR(50) NULL DEFAULT NULL , |
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`matched_taxonconcept_id` INT(11) NULL , |
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`taxonmatched` VARCHAR(100) NULL , |
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`taxonmatchedauthor` VARCHAR(150) NULL , |
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`unmatchedterms` VARCHAR(250) NULL , |
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`matchscore` DECIMAL(3,1) NULL , |
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`taxonmatchedacceptance` VARCHAR(45) NULL , |
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`accepted_taxonconcept_id` INT(11) NULL , |
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`acceptedtaxon` VARCHAR(100) NULL , |
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`acceptedauthor` VARCHAR(150) NULL , |
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`family_taxonconcept_id` INT(11) NULL , |
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`acceptedfamily` VARCHAR(50) NULL , |
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`acceptedgenus` VARCHAR(50) NULL , |
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`acceptedspecies` VARCHAR(45) NULL , |
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`accepted_taxonacceptance` VARCHAR(45) NULL , |
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`acceptedtaxonrank` VARCHAR(45) NULL , |
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`acceptedtaxonmorphospecies` VARCHAR(250) NULL , |
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PRIMARY KEY (`taxonverbatim_id`) , |
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INDEX `fk_taxonverbatim_taxonconcept1` (`matched_taxonconcept_id` ASC) , |
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INDEX `fk_taxonverbatim_taxonconcept2` (`accepted_taxonconcept_id` ASC) , |
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INDEX `fk_taxonverbatim_taxonconcept3` (`family_taxonconcept_id` ASC) , |
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CONSTRAINT `fk_taxonverbatim_taxonconcept1` |
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FOREIGN KEY (`matched_taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_taxonverbatim_taxonconcept2` |
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FOREIGN KEY (`accepted_taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_taxonverbatim_taxonconcept3` |
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FOREIGN KEY (`family_taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = InnoDB, |
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COMMENT = '\n' ; |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxondetermination` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxondetermination` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxondetermination` ( |
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`taxondetermination_id` INT(11) NOT NULL , |
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`taxonverbatim_id` INT NOT NULL , |
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`taxonoccurrence_id` INT(11) NOT NULL , |
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`determiner_party_id` INT(11) NULL DEFAULT NULL , |
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`determiner_role` VARCHAR(250) NOT NULL DEFAULT 'unknown' , |
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`determinationtype` TEXT NULL DEFAULT NULL , |
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`determination_reference_id` INT NOT NULL , |
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`isoriginal` INT(1) NOT NULL DEFAULT false , |
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`iscurrent` INT(1) NOT NULL DEFAULT false , |
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`taxonfit` TEXT NULL DEFAULT NULL , |
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`taxonconfidence` TEXT NULL DEFAULT NULL , |
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`grouptype` TEXT NULL DEFAULT NULL , |
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`notes` TEXT NULL DEFAULT NULL , |
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`notespublic` INT(1) NULL DEFAULT NULL , |
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`notesmgt` INT(1) NULL DEFAULT NULL , |
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`revisions` INT(1) NULL DEFAULT NULL , |
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`determinationdate` TIMESTAMP NULL DEFAULT NULL , |
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`taxonverbatim_id` INT(11) NULL DEFAULT NULL , |
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PRIMARY KEY (`taxondetermination_id`) , |
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INDEX `fk_taxondetermination_taxonverbatim1` (`taxonverbatim_id` ASC) , |
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INDEX `fk_taxondetermination_reference1` (`determination_reference_id` ASC) , |
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CONSTRAINT `fk_taxondetermination_taxonverbatim1` |
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FOREIGN KEY (`taxonverbatim_id` ) |
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REFERENCES `default_schema`.`taxonverbatim` (`taxonverbatim_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_taxondetermination_reference1` |
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FOREIGN KEY (`determination_reference_id` ) |
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REFERENCES `default_schema`.`reference` (`reference_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION); |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxonstatus` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxonstatus` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonstatus` ( |
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`taxonstatus_id` INT(11) NOT NULL , |
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`taxonconcept_id` INT(11) NOT NULL , |
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`party_id` INT(11) NULL DEFAULT NULL , |
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`taxonconceptstatus` VARCHAR(250) NOT NULL DEFAULT 'undetermined' , |
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`reference_id` INT(11) NULL DEFAULT NULL , |
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`taxonpartycomments` TEXT NULL DEFAULT NULL , |
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`startdate` TIMESTAMP NULL DEFAULT NULL , |
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`stopdate` TIMESTAMP NULL DEFAULT NULL , |
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PRIMARY KEY (`taxonstatus_id`) , |
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UNIQUE INDEX `taxonstatus_unique` (`taxonconcept_id` ASC, `party_id` ASC) , |
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CONSTRAINT `taxonstatus_taxonconcept_id_fkey` |
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FOREIGN KEY (`taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE CASCADE |
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ON UPDATE CASCADE); |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxoncorrelation` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxoncorrelation` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxoncorrelation` ( |
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`taxoncorrelation_id` INT(11) NOT NULL , |
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`taxonstatus_id` INT(11) NOT NULL , |
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`taxonconcept_id` INT(11) NOT NULL , |
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`taxonconcept_id` INT(11) NOT NULL , |
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`plantconvergence` TEXT NOT NULL , |
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`correlationstart` TIMESTAMP NOT NULL , |
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`correlationstop` TIMESTAMP NULL DEFAULT NULL , |
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PRIMARY KEY (`taxoncorrelation_id`) , |
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INDEX `taxoncorrelation_taxonstatus_id_fkey` (`taxonstatus_id` ASC) , |
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INDEX `fk_taxoncorrelation_taxonconcept1` (`taxonconcept_id` ASC) , |
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CONSTRAINT `taxoncorrelation_taxonstatus_id_fkey` |
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FOREIGN KEY (`taxonstatus_id` ) |
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REFERENCES `default_schema`.`taxonstatus` (`taxonstatus_id` ) |
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ON DELETE CASCADE |
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ON UPDATE CASCADE, |
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CONSTRAINT `fk_taxoncorrelation_taxonconcept1` |
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FOREIGN KEY (`taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION); |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxonlineage` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxonlineage` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonlineage` ( |
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`taxonlineage_id` INT(11) NOT NULL , |
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`childtaxonstatus_id` INT(11) NOT NULL , |
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`parenttaxonstatus_id` INT(11) NOT NULL , |
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PRIMARY KEY (`taxonlineage_id`) , |
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INDEX `taxonlineage_childtaxonstatus_id_fkey` (`childtaxonstatus_id` ASC) , |
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INDEX `taxonlineage_parenttaxonstatus_id_fkey` (`parenttaxonstatus_id` ASC) , |
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CONSTRAINT `taxonlineage_childtaxonstatus_id_fkey` |
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FOREIGN KEY (`childtaxonstatus_id` ) |
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REFERENCES `default_schema`.`taxonstatus` (`taxonstatus_id` ) |
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ON DELETE CASCADE |
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ON UPDATE CASCADE, |
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CONSTRAINT `taxonlineage_parenttaxonstatus_id_fkey` |
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FOREIGN KEY (`parenttaxonstatus_id` ) |
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REFERENCES `default_schema`.`taxonstatus` (`taxonstatus_id` ) |
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ON DELETE CASCADE |
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ON UPDATE CASCADE); |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxonclassification` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxonclassification` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonclassification` ( |
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`taxonclassification_id` INT NOT NULL , |
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`taxonconcept_id` INT(11) NOT NULL , |
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`parent_taxonconcept_id` INT(11) NOT NULL , |
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PRIMARY KEY (`taxonclassification_id`) , |
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INDEX `fk_taxonclassification_taxonconcept1` (`taxonconcept_id` ASC) , |
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INDEX `fk_taxonclassification_taxonconcept2` (`parent_taxonconcept_id` ASC) , |
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CONSTRAINT `fk_taxonclassification_taxonconcept1` |
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FOREIGN KEY (`taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_taxonclassification_taxonconcept2` |
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FOREIGN KEY (`parent_taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = InnoDB; |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxon` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxon` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxon` ( |
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`taxon_id` INT NOT NULL , |
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`taxonrank` VARCHAR(45) NOT NULL , |
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`scientificname` VARCHAR(100) NOT NULL , |
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`scientificnameauthorship` VARCHAR(150) NULL , |
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`authorship_reference_id` INT NULL , |
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PRIMARY KEY (`taxon_id`) , |
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INDEX `fk_taxon_reference2` (`authorship_reference_id` ASC) , |
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CONSTRAINT `fk_taxon_reference2` |
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FOREIGN KEY (`authorship_reference_id` ) |
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REFERENCES `default_schema`.`reference` (`reference_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = InnoDB; |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxonclassification` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxonclassification` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonclassification` ( |
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`taxonclassification_id` INT NOT NULL , |
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`taxonconcept_id` INT(11) NOT NULL , |
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`parent_taxonconcept_id` INT(11) NOT NULL , |
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PRIMARY KEY (`taxonclassification_id`) , |
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INDEX `fk_taxonclassification_taxonconcept1` (`taxonconcept_id` ASC) , |
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INDEX `fk_taxonclassification_taxonconcept2` (`parent_taxonconcept_id` ASC) , |
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CONSTRAINT `fk_taxonclassification_taxonconcept1` |
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FOREIGN KEY (`taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_taxonclassification_taxonconcept2` |
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FOREIGN KEY (`parent_taxonconcept_id` ) |
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REFERENCES `default_schema`.`taxonconcept` (`taxonconcept_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = InnoDB; |
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-- ----------------------------------------------------- |
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-- Table `default_schema`.`taxonclassification_reference` |
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-- ----------------------------------------------------- |
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DROP TABLE IF EXISTS `default_schema`.`taxonclassification_reference` ; |
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CREATE TABLE IF NOT EXISTS `default_schema`.`taxonclassification_reference` ( |
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`taxonclassification_reference_id` INT NOT NULL , |
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`taxonclassification_id` INT NOT NULL , |
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`reference_id` INT NOT NULL , |
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`taxonclassification_start` TIMESTAMP NULL , |
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`taxonclassification_stop` TIMESTAMP NULL , |
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PRIMARY KEY (`taxonclassification_reference_id`) , |
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INDEX `fk_taxonclassification_reference_taxonclassification1` (`taxonclassification_id` ASC) , |
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INDEX `fk_taxonclassification_reference_reference1` (`reference_id` ASC) , |
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CONSTRAINT `fk_taxonclassification_reference_taxonclassification1` |
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FOREIGN KEY (`taxonclassification_id` ) |
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REFERENCES `default_schema`.`taxonclassification` (`taxonclassification_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_taxonclassification_reference_reference1` |
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FOREIGN KEY (`reference_id` ) |
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REFERENCES `default_schema`.`reference` (`reference_id` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = InnoDB; |
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SET SQL_MODE=@OLD_SQL_MODE; |
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SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS; |
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SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS; |
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Also available in: Unified diff
Added schemas/VegBIEN/