Revision 7750
Added by Aaron Marcuse-Kubitza over 11 years ago
| schemas/BIEN2/datasource_schema/bien_web_datasource_schema.sql | ||
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SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0; |
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SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0; |
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SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='TRADITIONAL'; |
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CREATE SCHEMA IF NOT EXISTS `bien_web` DEFAULT CHARACTER SET latin1 ; |
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USE `bien_web` ; |
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-- ----------------------------------------------------- |
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-- Table `bien_web`.`datasource` |
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-- ----------------------------------------------------- |
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CREATE TABLE IF NOT EXISTS `bien_web`.`datasource` ( |
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`dataSourceID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT , |
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`dataSourceName` VARCHAR(100) NULL DEFAULT NULL , |
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`aggregatorOrPrimary` VARCHAR(25) NULL DEFAULT NULL , |
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`sourceType` VARCHAR(25) NULL DEFAULT NULL , |
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`accessLevel` VARCHAR(50) NULL DEFAULT NULL , |
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`accessConditions` VARCHAR(500) NULL DEFAULT NULL , |
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`authorshipContactEmail` VARCHAR(150) NULL DEFAULT NULL , |
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PRIMARY KEY (`dataSourceID`) , |
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UNIQUE INDEX `dataSourceName` (`dataSourceName` ASC) , |
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INDEX `aggregatorOrPrimary` (`aggregatorOrPrimary` ASC) , |
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INDEX `sourceType` (`sourceType` ASC) , |
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INDEX `accessLevel` (`accessLevel` ASC) ) |
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ENGINE = MyISAM |
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DEFAULT CHARACTER SET = utf8; |
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-- ----------------------------------------------------- |
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-- Table `bien_web`.`dataSourceNormalized` |
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-- ----------------------------------------------------- |
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CREATE TABLE IF NOT EXISTS `bien_web`.`dataSourceNormalized` ( |
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`dataSourceNormalizedID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT , |
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`dataSourceID` INT(11) UNSIGNED NOT NULL , |
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`dataSourceNameCorrected` VARCHAR(255) NOT NULL , |
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`isHerbarium` INT(1) NOT NULL DEFAULT 0 , |
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`isAggregator` INT(1) NOT NULL DEFAULT 0 , |
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PRIMARY KEY (`dataSourceNormalizedID`) , |
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INDEX `dataSourceID` (`dataSourceID` ASC) , |
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INDEX `dataSourceName` (`dataSourceNameCorrected` ASC) , |
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INDEX `isHerbarium` (`isHerbarium` ASC) , |
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INDEX `fk_dataSourceNameCorrected_datasource1` (`dataSourceID` ASC) , |
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CONSTRAINT `fk_dataSourceNameCorrected_datasource1` |
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FOREIGN KEY (`dataSourceID` ) |
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REFERENCES `bien_web`.`datasource` (`dataSourceID` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = InnoDB |
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AUTO_INCREMENT = 1578 |
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DEFAULT CHARACTER SET = latin1; |
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-- ----------------------------------------------------- |
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-- Table `bien_web`.`party` |
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-- ----------------------------------------------------- |
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CREATE TABLE IF NOT EXISTS `bien_web`.`party` ( |
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`partyID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT , |
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`partyType` VARCHAR(20) NOT NULL DEFAULT 'person' COMMENT '\'person\',\'institution\'' , |
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`partyFullName` VARCHAR(100) NOT NULL , |
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`userName` VARCHAR(50) NULL DEFAULT NULL , |
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`lastName` VARCHAR(50) NULL DEFAULT NULL , |
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`firstName` VARCHAR(50) NULL DEFAULT NULL , |
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`email` VARCHAR(150) NULL DEFAULT NULL , |
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`primaryInstitution` VARCHAR(255) NULL DEFAULT NULL , |
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`institutionName` VARCHAR(150) NULL DEFAULT NULL , |
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`department` VARCHAR(150) NULL DEFAULT NULL , |
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`address1` VARCHAR(150) NULL DEFAULT NULL , |
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`address2` VARCHAR(150) NULL DEFAULT NULL , |
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`city` VARCHAR(50) NULL DEFAULT NULL , |
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`stateProvince` VARCHAR(50) NULL DEFAULT NULL , |
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`postalCode` VARCHAR(25) NULL DEFAULT NULL , |
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`country` VARCHAR(50) NULL DEFAULT NULL , |
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`stateProvinceCode` VARCHAR(20) NULL DEFAULT NULL , |
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PRIMARY KEY (`partyID`) , |
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INDEX `partyType` (`partyType` ASC) , |
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INDEX `lastName` (`lastName` ASC) , |
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INDEX `firstName` (`firstName` ASC) , |
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INDEX `fullName` (`partyFullName` ASC) , |
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INDEX `institutionName` (`institutionName` ASC) , |
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INDEX `country` (`country` ASC) ) |
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ENGINE = MyISAM |
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DEFAULT CHARACTER SET = utf8; |
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-- ----------------------------------------------------- |
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-- Table `bien_web`.`datasource_party` |
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-- ----------------------------------------------------- |
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CREATE TABLE IF NOT EXISTS `bien_web`.`datasource_party` ( |
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`datasourceNormalized_party_ID` INT(11) NOT NULL AUTO_INCREMENT , |
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`dataSourceNormalizedID` INT(11) UNSIGNED NOT NULL , |
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`partyID` INT(11) UNSIGNED NOT NULL , |
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`userRole` VARCHAR(50) NULL DEFAULT NULL , |
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`isPI` INT(1) NULL DEFAULT NULL , |
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UNIQUE INDEX `user_datasource` (`partyID` ASC, `dataSourceNormalizedID` ASC) , |
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INDEX `userRole` (`userRole` ASC) , |
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INDEX `isPI` (`isPI` ASC) , |
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INDEX `fk_datasource_party_party1` (`partyID` ASC) , |
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INDEX `fk_datasource_party_dataSourceNormalized1` (`dataSourceNormalizedID` ASC) , |
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PRIMARY KEY (`datasourceNormalized_party_ID`) , |
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UNIQUE INDEX `datasourceNormalized_party_ID_UNIQUE` (`datasourceNormalized_party_ID` ASC) , |
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CONSTRAINT `fk_datasource_party_party1` |
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FOREIGN KEY (`partyID` ) |
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REFERENCES `bien_web`.`party` (`partyID` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_datasource_party_dataSourceNormalized1` |
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FOREIGN KEY (`dataSourceNormalizedID` ) |
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REFERENCES `bien_web`.`dataSourceNormalized` (`dataSourceNormalizedID` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = MyISAM |
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DEFAULT CHARACTER SET = utf8; |
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-- ----------------------------------------------------- |
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-- Table `bien_web`.`plot` |
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-- ----------------------------------------------------- |
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CREATE TABLE IF NOT EXISTS `bien_web`.`plot` ( |
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`plotID` INT(11) UNSIGNED NOT NULL COMMENT '=DBPlotID from bien2' , |
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`dataSourceID` INT(11) UNSIGNED NULL DEFAULT NULL , |
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`dataSourceName` VARCHAR(100) NULL DEFAULT NULL , |
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`plotCode` VARCHAR(100) NULL DEFAULT NULL , |
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`plotAreaHa` DOUBLE NULL DEFAULT NULL , |
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`plotMinDbh` DECIMAL(5,1) NULL DEFAULT NULL , |
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`plotMethod` VARCHAR(100) NULL DEFAULT NULL , |
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`country` VARCHAR(50) NULL DEFAULT NULL , |
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`stateProvince` VARCHAR(100) NULL DEFAULT NULL , |
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`countyParish` VARCHAR(100) NULL DEFAULT NULL , |
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`latitude` DECIMAL(10,5) NULL DEFAULT NULL , |
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`longitude` DECIMAL(10,5) NULL DEFAULT NULL , |
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`isValidLatLong` INT(1) NULL DEFAULT NULL , |
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`isGeovalid` INT(1) NULL DEFAULT NULL , |
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`elevation_m` DECIMAL(6,1) NULL DEFAULT NULL , |
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`localityDescription` VARCHAR(500) NULL DEFAULT NULL , |
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PRIMARY KEY (`plotID`) , |
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INDEX `dataSourceName` (`dataSourceName` ASC) , |
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INDEX `dataSourceID` (`dataSourceID` ASC) , |
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INDEX `plotID` (`plotID` ASC) , |
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INDEX `country` (`country` ASC) , |
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INDEX `stateProvince` (`stateProvince` ASC) , |
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INDEX `plotCode` (`plotCode` ASC) , |
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INDEX `plotAreaHa` (`plotAreaHa` ASC) , |
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INDEX `plotMinDbh` (`plotMinDbh` ASC) , |
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INDEX `plotMethod` (`plotMethod` ASC) , |
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INDEX `isValidLatLong` (`isValidLatLong` ASC) , |
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INDEX `isGeovalid` (`isGeovalid` ASC) , |
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INDEX `fk_plot_datasource1` (`dataSourceID` ASC) , |
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CONSTRAINT `fk_plot_datasource1` |
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FOREIGN KEY (`dataSourceID` ) |
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REFERENCES `bien_web`.`datasource` (`dataSourceID` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = MyISAM |
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DEFAULT CHARACTER SET = utf8; |
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-- ----------------------------------------------------- |
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-- Table `bien_web`.`taxon` |
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-- ----------------------------------------------------- |
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CREATE TABLE IF NOT EXISTS `bien_web`.`taxon` ( |
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`taxonID` INT(10) UNSIGNED NOT NULL AUTO_INCREMENT , |
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`parentTaxonID` INT(10) UNSIGNED NULL DEFAULT NULL , |
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`taxon` VARCHAR(255) NOT NULL , |
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`rank` VARCHAR(255) NULL DEFAULT NULL , |
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`nameClass` VARCHAR(50) NULL DEFAULT NULL , |
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`taxonAuthor` VARCHAR(255) NULL DEFAULT NULL , |
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`family` VARCHAR(150) NULL DEFAULT NULL , |
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`genus` VARCHAR(100) NULL DEFAULT NULL , |
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`species` VARCHAR(100) NULL DEFAULT NULL , |
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`leftIndex` INT(11) NULL DEFAULT NULL , |
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`rightIndex` INT(11) NULL DEFAULT NULL , |
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`isAccepted` INT(1) NULL DEFAULT NULL , |
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`isHybrid` INT(10) UNSIGNED NOT NULL DEFAULT '0' , |
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PRIMARY KEY (`taxonID`) , |
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UNIQUE INDEX `leftIndex` (`leftIndex` ASC) , |
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UNIQUE INDEX `rightIndex` (`rightIndex` ASC) , |
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INDEX `taxon` (`taxon` ASC) , |
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INDEX `taxonAuthor` (`taxonAuthor` ASC) , |
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INDEX `rank` (`rank` ASC) , |
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INDEX `nameClass` (`nameClass` ASC) , |
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INDEX `family` (`family` ASC) , |
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INDEX `genus` (`genus` ASC) , |
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INDEX `species` (`species` ASC) , |
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INDEX `isHybrid` (`isHybrid` ASC) , |
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INDEX `parentTaxonID` (`parentTaxonID` ASC) ) |
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ENGINE = MyISAM |
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DEFAULT CHARACTER SET = utf8; |
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-- ----------------------------------------------------- |
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-- Table `bien_web`.`observation` |
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-- ----------------------------------------------------- |
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CREATE TABLE IF NOT EXISTS `bien_web`.`observation` ( |
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`observationID` INT(11) UNSIGNED NOT NULL AUTO_INCREMENT , |
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`dataSourceID` INT(11) UNSIGNED NULL DEFAULT NULL , |
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`dataSourceName` VARCHAR(100) NULL DEFAULT NULL , |
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`dataSourceNamePrimary` VARCHAR(100) NULL DEFAULT NULL , |
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`plotID` INT(11) UNSIGNED NULL DEFAULT NULL , |
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`observationType` VARCHAR(10) NULL DEFAULT NULL COMMENT '=plot,specimen,trait)' , |
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`bien2_taxonomyID` INT(11) UNSIGNED NULL DEFAULT NULL , |
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`bien2_DBPlotID` INT(11) UNSIGNED NULL DEFAULT NULL , |
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`bien2_ObservationID` INT(11) UNSIGNED NULL DEFAULT NULL , |
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`bien2_OccurID` INT(11) UNSIGNED NULL DEFAULT NULL , |
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`bien2_TraitObservationID` INT(11) UNSIGNED NULL DEFAULT NULL , |
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`taxonAuthorityVerbatim` VARCHAR(255) NULL DEFAULT NULL , |
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`higherPlantGroup` VARCHAR(25) NULL DEFAULT NULL , |
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`taxonID` INT(10) UNSIGNED NULL , |
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`family` VARCHAR(100) NULL DEFAULT NULL , |
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`genus` VARCHAR(100) NULL DEFAULT NULL , |
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`species` VARCHAR(150) NULL DEFAULT NULL , |
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`taxon` VARCHAR(200) NULL DEFAULT NULL , |
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`taxonAuthor` VARCHAR(255) NULL DEFAULT NULL , |
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`taxonMorphospecies` VARCHAR(255) NULL DEFAULT NULL , |
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`rank` VARCHAR(50) NULL DEFAULT NULL , |
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`acceptance` VARCHAR(2) NULL DEFAULT NULL , |
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`country` VARCHAR(50) NULL DEFAULT NULL , |
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`stateProvince` VARCHAR(100) NULL DEFAULT NULL , |
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`countyParish` VARCHAR(100) NULL DEFAULT NULL , |
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`countryError` DOUBLE NULL DEFAULT NULL , |
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`stateProvinceError` DOUBLE NULL DEFAULT NULL , |
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`localityDescription` VARCHAR(500) NULL DEFAULT NULL , |
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`collector` VARCHAR(150) NULL DEFAULT NULL , |
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`collectionNumber` VARCHAR(50) NULL DEFAULT NULL , |
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`identifiedBy` VARCHAR(150) NULL DEFAULT NULL , |
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`observationDate` DATE NULL DEFAULT NULL , |
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`plotCode` VARCHAR(100) NULL DEFAULT NULL , |
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`plotAreaHa` DOUBLE NULL DEFAULT NULL , |
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`plotMinDbh` DECIMAL(5,1) NULL DEFAULT NULL , |
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`plotMethod` VARCHAR(100) NULL DEFAULT NULL , |
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`latitude` DECIMAL(10,5) NULL DEFAULT NULL , |
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`longitude` DECIMAL(10,5) NULL DEFAULT NULL , |
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`isValidLatLong` INT(1) NULL DEFAULT NULL , |
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`isGeovalid` INT(1) NULL DEFAULT NULL , |
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`isNewWorld` INT(1) NULL DEFAULT NULL , |
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`elevation_m` DECIMAL(6,1) NULL DEFAULT NULL , |
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`isCultivated` INT(1) NULL DEFAULT '0' , |
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`isCultivatedReason` VARCHAR(255) NULL DEFAULT NULL , |
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`abund` INT(11) NULL DEFAULT NULL , |
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`abund1` INT(11) NULL DEFAULT NULL , |
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`abund2.5` INT(11) NULL DEFAULT NULL , |
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`abund10` INT(11) NULL DEFAULT NULL , |
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`pctCover` DECIMAL(10,5) NULL DEFAULT NULL , |
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`traitName` VARCHAR(200) NULL DEFAULT NULL , |
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`traitValue` VARCHAR(100) NULL DEFAULT NULL , |
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`traitUnit` VARCHAR(100) NULL DEFAULT NULL , |
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`traitMethod` VARCHAR(255) NULL DEFAULT NULL , |
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PRIMARY KEY (`observationID`) , |
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INDEX `observationID` (`observationID` ASC) , |
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INDEX `dataSourceID` (`dataSourceID` ASC) , |
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INDEX `dataSourceName` (`dataSourceName` ASC) , |
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INDEX `dataSourceNamePrimary` (`dataSourceNamePrimary` ASC) , |
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INDEX `plotID` (`plotID` ASC) , |
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INDEX `observationType` (`observationType` ASC) , |
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INDEX `bien2_taxonomyID` (`bien2_taxonomyID` ASC) , |
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INDEX `bien2_DBPlotID` (`bien2_DBPlotID` ASC) , |
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| 255 |
INDEX `bien2_ObservationID` (`bien2_ObservationID` ASC) , |
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| 256 |
INDEX `bien2_OccurID` (`bien2_OccurID` ASC) , |
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INDEX `taxonAuthorityVerbatim` (`taxonAuthorityVerbatim` ASC) , |
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INDEX `higherPlantGroup` (`higherPlantGroup` ASC) , |
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INDEX `family` (`family` ASC) , |
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INDEX `genus` (`genus` ASC) , |
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INDEX `species` (`species` ASC) , |
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INDEX `taxon` (`taxon` ASC) , |
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INDEX `taxonAuthor` (`taxonAuthor` ASC) , |
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INDEX `taxonMorphospecies` (`taxonMorphospecies` ASC) , |
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INDEX `rank` (`rank` ASC) , |
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INDEX `acceptance` (`acceptance` ASC) , |
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INDEX `country` (`country` ASC) , |
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INDEX `stateProvince` (`stateProvince` ASC) , |
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| 269 |
INDEX `collector` (`collector` ASC) , |
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INDEX `identifiedBy` (`identifiedBy` ASC) , |
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INDEX `plotCode` (`plotCode` ASC) , |
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INDEX `plotAreaHa` (`plotAreaHa` ASC) , |
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INDEX `plotMinDbh` (`plotMinDbh` ASC) , |
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INDEX `plotMethod` (`plotMethod` ASC) , |
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INDEX `isValidLatLong` (`isValidLatLong` ASC) , |
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| 276 |
INDEX `isGeovalid` (`isGeovalid` ASC) , |
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INDEX `isNewWorld` (`isNewWorld` ASC) , |
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INDEX `isCultivated` (`isCultivated` ASC) , |
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| 279 |
INDEX `isCultivatedReason` (`isCultivatedReason` ASC) , |
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INDEX `bien2_TraitObservationID` (`bien2_TraitObservationID` ASC) , |
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INDEX `traitName` (`traitName` ASC) , |
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INDEX `traitMethod` (`traitMethod` ASC) , |
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INDEX `traitUnit` (`traitUnit` ASC) , |
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INDEX `fk_observation_datasource` (`dataSourceID` ASC) , |
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INDEX `fk_observation_plot1` (`plotID` ASC) , |
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INDEX `fk_observation_taxon1` (`taxonID` ASC) , |
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CONSTRAINT `fk_observation_datasource` |
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FOREIGN KEY (`dataSourceID` ) |
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REFERENCES `bien_web`.`datasource` (`dataSourceID` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_observation_plot1` |
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FOREIGN KEY (`plotID` ) |
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REFERENCES `bien_web`.`plot` (`plotID` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION, |
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CONSTRAINT `fk_observation_taxon1` |
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FOREIGN KEY (`taxonID` ) |
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REFERENCES `bien_web`.`taxon` (`taxonID` ) |
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ON DELETE NO ACTION |
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ON UPDATE NO ACTION) |
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ENGINE = MyISAM |
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AUTO_INCREMENT = 10052218 |
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DEFAULT CHARACTER SET = utf8; |
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SET SQL_MODE=@OLD_SQL_MODE; |
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SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS; |
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SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS; |
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Also available in: Unified diff
Added schemas/BIEN2/