Revision 7841
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/HVAA/Specimen/map.csv | ||
|---|---|---|
| 1 | 1 |
HVAA,VegCore,Filter,Comments |
| 2 |
institutionCode,specimenHolders,, |
|
| 2 |
institutionCode,specimenHolderInstitutions,,
|
|
| 3 | 3 |
collectionCode,collection,, |
| 4 | 4 |
basisOfRecord,basisOfRecord,, |
| 5 | 5 |
catalogNumber,accessionNumber,, |
| inputs/MT/Specimen/map.csv | ||
|---|---|---|
| 6 | 6 |
collectionID,collectionURL,, |
| 7 | 7 |
occurrenceRemarks,occurrenceRemarks,, |
| 8 | 8 |
type,type,, |
| 9 |
institutionCode,specimenHolders,, |
|
| 9 |
institutionCode,specimenHolderInstitutions,,
|
|
| 10 | 10 |
rights,rights,, |
| 11 | 11 |
family,family,, |
| 12 | 12 |
continent,continent,, |
| inputs/XAL/Specimen/map.csv | ||
|---|---|---|
| 1 | 1 |
XAL:/content/record/,VegCore,Filter,Comments |
| 2 | 2 |
darwin:DateLastModified,modified,, |
| 3 |
darwin:InstitutionCode,specimenHolders,, |
|
| 3 |
darwin:InstitutionCode,specimenHolderInstitutions,,
|
|
| 4 | 4 |
darwin:CollectionCode,collection,, |
| 5 | 5 |
darwin:CatalogNumber,accessionNumber,, |
| 6 | 6 |
darwin:ScientificName,taxonName,, |
| inputs/XAL/Specimen/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
darwin:DateLastModified,modified,, |
| 2 |
darwin:InstitutionCode,specimenHolders,, |
|
| 2 |
darwin:InstitutionCode,specimenHolderInstitutions,,
|
|
| 3 | 3 |
darwin:CollectionCode,collection,, |
| 4 | 4 |
darwin:CatalogNumber,accessionNumber,, |
| 5 | 5 |
darwin:ScientificName,taxonName,, |
| inputs/NCU/Specimen/map.csv | ||
|---|---|---|
| 4 | 4 |
CollectionObjectTypeID,*CollectionObjectTypeID,, |
| 5 | 5 |
CollectionObjectID,*CollectionObjectID,, |
| 6 | 6 |
database,*database,, |
| 7 |
OwnerInstitution,specimenHolders,/_alt/2, |
|
| 7 |
OwnerInstitution,specimenHolderInstitutions,/_alt/2,
|
|
| 8 | 8 |
CollectionGUID,collectionURL,, |
| 9 | 9 |
OriginalTaxonLabel,originalScientificName,, |
| 10 | 10 |
CurrentScientificName,taxonName,, |
| ... | ... | |
| 13 | 13 |
CollectionDate,dateCollected,, |
| 14 | 14 |
BarCode,OMIT,,"Omitted because this isn't specified on all rows, but SpecimenPK is" |
| 15 | 15 |
CatalogNumber,accessionNumber,, |
| 16 |
CatalogSeriesPrefix,specimenHolders,/_alt/1, |
|
| 16 |
CatalogSeriesPrefix,specimenHolderInstitutions,/_alt/1,
|
|
| 17 | 17 |
Description,occurrenceRemarks,, |
| 18 | 18 |
LandOwner,*LandOwner,, |
| 19 | 19 |
BlockLocationReason,*BlockLocationReason,, |
| inputs/NCU/Specimen/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
SpecimenPK,occurrenceID,, |
| 2 |
OwnerInstitution,specimenHolders,/_alt/2, |
|
| 2 |
OwnerInstitution,specimenHolderInstitutions,/_alt/2,
|
|
| 3 | 3 |
CollectionGUID,collectionURL,, |
| 4 | 4 |
OriginalTaxonLabel,originalScientificName,, |
| 5 | 5 |
CurrentScientificName,taxonName,, |
| 6 | 6 |
CurrentScientificNameWithAuthor,scientificName,, |
| 7 | 7 |
CollectionDate,dateCollected,, |
| 8 |
CatalogSeriesPrefix,specimenHolders,/_alt/1, |
|
| 8 |
CatalogSeriesPrefix,specimenHolderInstitutions,/_alt/1,
|
|
| 9 | 9 |
Description,occurrenceRemarks,, |
| 10 | 10 |
CityLocality,verbatimLocality,/_alt/2, |
| 11 | 11 |
Latitude1,decimalLatitude,, |
| inputs/ACAD/Specimen/map.csv | ||
|---|---|---|
| 7 | 7 |
geodeticDatum,geodeticDatum,, |
| 8 | 8 |
reproductiveCondition,reproductiveCondition,, |
| 9 | 9 |
decimalLongitude,decimalLongitude,, |
| 10 |
institutionCode,specimenHolders,, |
|
| 10 |
institutionCode,specimenHolderInstitutions,,
|
|
| 11 | 11 |
continent,continent,, |
| 12 | 12 |
recordedBy,recordedBy,, |
| 13 | 13 |
county,county,, |
| inputs/WIN/Specimen/map.csv | ||
|---|---|---|
| 33 | 33 |
collectionCode,collection,, |
| 34 | 34 |
verbatimCoordinates,verbatimCoordinates,, |
| 35 | 35 |
decimalLatitude,decimalLatitude,, |
| 36 |
institutionCode,specimenHolders,, |
|
| 36 |
institutionCode,specimenHolderInstitutions,,
|
|
| 37 | 37 |
catalogNumber,accessionNumber,, |
| 38 | 38 |
verbatimLatitude,verbatimLatitude,, |
| 39 | 39 |
identificationRemarks,identificationRemarks,, |
| inputs/BRIT/specimen_flat/map.csv | ||
|---|---|---|
| 1 | 1 |
BRIT,VegCore,Filter,Comments |
| 2 | 2 |
specimen_id,dataProviderRecordID,, |
| 3 |
Institution_Code,specimenHolders,, |
|
| 3 |
Institution_Code,specimenHolderInstitutions,,
|
|
| 4 | 4 |
Global_Unique_Identifier,UNUSED,, |
| 5 | 5 |
Collector_Abbrev_Name,recordedBy,/_join/1, |
| 6 | 6 |
Collection_Team,recordedBy,/_join/2, |
| inputs/GBIF/Specimen/map.csv | ||
|---|---|---|
| 4 | 4 |
Collector,recordedBy,, |
| 5 | 5 |
3,*3,, |
| 6 | 6 |
LatestDateCollected,dateCollected,, |
| 7 |
InstitutionCD,specimenHolders,, |
|
| 7 |
InstitutionCD,specimenHolderInstitutions,,
|
|
| 8 | 8 |
CollectionCD,collection,, |
| 9 | 9 |
CatalogNO,accessionNumber,, |
| 10 | 10 |
LastDateModified,modified,, |
| inputs/GBIF/Specimen/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
LatestDateCollected,dateCollected,, |
| 2 |
InstitutionCD,specimenHolders,, |
|
| 2 |
InstitutionCD,specimenHolderInstitutions,,
|
|
| 3 | 3 |
CollectionCD,collection,, |
| 4 | 4 |
CatalogNO,accessionNumber,, |
| 5 | 5 |
LastDateModified,modified,, |
| inputs/QFA/Specimen/map.csv | ||
|---|---|---|
| 14 | 14 |
identifiedBy,identifiedBy,, |
| 15 | 15 |
associatedReferences,associatedReferences,, |
| 16 | 16 |
kingdom,kingdom,, |
| 17 |
institutionCode,specimenHolders,, |
|
| 17 |
institutionCode,specimenHolderInstitutions,,
|
|
| 18 | 18 |
catalogNumber,accessionNumber,, |
| 19 | 19 |
verbatimSRS,verbatimSRS,, |
| 20 | 20 |
verbatimLongitude,verbatimLongitude,, |
| inputs/JBM/Specimen/map.csv | ||
|---|---|---|
| 34 | 34 |
type,type,, |
| 35 | 35 |
order,order,, |
| 36 | 36 |
kingdom,kingdom,, |
| 37 |
institutionCode,specimenHolders,, |
|
| 37 |
institutionCode,specimenHolderInstitutions,,
|
|
| 38 | 38 |
datasetID,datasetURL,, |
| 39 | 39 |
countryCode,countryCode,, |
| 40 | 40 |
catalogNumber,accessionNumber,, |
| inputs/UBC/Specimen/map.csv | ||
|---|---|---|
| 55 | 55 |
previousIdentifications,previousIdentifications,, |
| 56 | 56 |
identifiedBy,identifiedBy,, |
| 57 | 57 |
associatedSequences,associatedSequences,, |
| 58 |
institutionCode,specimenHolders,, |
|
| 58 |
institutionCode,specimenHolderInstitutions,, |
|
| inputs/HIBG/Specimen/map.csv | ||
|---|---|---|
| 25 | 25 |
datasetName,dataset,, |
| 26 | 26 |
bibliographicCitation,bibliographicCitation,, |
| 27 | 27 |
datasetID,datasetURL,, |
| 28 |
institutionCode,specimenHolders,, |
|
| 28 |
institutionCode,specimenHolderInstitutions,,
|
|
| 29 | 29 |
recordNumber,collectorNumber,, |
| 30 | 30 |
order,order,, |
| 31 | 31 |
kingdom,kingdom,, |
| inputs/SpeciesLink/Specimen/map.csv | ||
|---|---|---|
| 2 | 2 |
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,, |
| 3 | 3 |
dwc_dwcore_DateLastModified,modified,, |
| 4 | 4 |
dwc_dwcore_BasisOfRecord,basisOfRecord,, |
| 5 |
dwc_dwcore_InstitutionCode,specimenHolders,, |
|
| 5 |
dwc_dwcore_InstitutionCode,specimenHolderInstitutions,,
|
|
| 6 | 6 |
dwc_dwcore_CollectionCode,collection,, |
| 7 | 7 |
dwc_dwcore_CatalogNumber,accessionNumber,, |
| 8 | 8 |
dwc_dwcore_Remarks,occurrenceRemarks,/_alt/3, |
| ... | ... | |
| 43 | 43 |
dwc_geospatial_VerbatimLongitude,verbatimLongitude,,Contains a mix of DMS and other verbatim coordinates |
| 44 | 44 |
http__purl_org_dc_terms_modified,modified,, |
| 45 | 45 |
dwc_terms_collectionID,collectionURL,, |
| 46 |
dwc_terms_institutionCode,specimenHolders,, |
|
| 46 |
dwc_terms_institutionCode,specimenHolderInstitutions,,
|
|
| 47 | 47 |
dwc_terms_collectionCode,collection,, |
| 48 | 48 |
dwc_terms_basisOfRecord,basisOfRecord,, |
| 49 | 49 |
dwc_terms_identifiedBy,identifiedBy,, |
| ... | ... | |
| 93 | 93 |
dwc_terms_infraspecificEpithet,infraspecificEpithet,, |
| 94 | 94 |
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,/_alt/1, |
| 95 | 95 |
conceptual_darwin_2003_1_0_DateLastModified,modified,, |
| 96 |
conceptual_darwin_2003_1_0_InstitutionCode,specimenHolders,, |
|
| 96 |
conceptual_darwin_2003_1_0_InstitutionCode,specimenHolderInstitutions,,
|
|
| 97 | 97 |
conceptual_darwin_2003_1_0_CollectionCode,collection,, |
| 98 | 98 |
conceptual_darwin_2003_1_0_CatalogNumber,accessionNumber,, |
| 99 | 99 |
conceptual_darwin_2003_1_0_ScientificName,taxonName,, |
| inputs/SpeciesLink/Specimen/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,, |
| 2 | 2 |
dwc_dwcore_DateLastModified,modified,, |
| 3 | 3 |
dwc_dwcore_BasisOfRecord,basisOfRecord,, |
| 4 |
dwc_dwcore_InstitutionCode,specimenHolders,, |
|
| 4 |
dwc_dwcore_InstitutionCode,specimenHolderInstitutions,,
|
|
| 5 | 5 |
dwc_dwcore_CollectionCode,collection,, |
| 6 | 6 |
dwc_dwcore_CatalogNumber,accessionNumber,, |
| 7 | 7 |
dwc_dwcore_Remarks,occurrenceRemarks,/_alt/3, |
| ... | ... | |
| 42 | 42 |
dwc_geospatial_VerbatimLongitude,verbatimLongitude,,Contains a mix of DMS and other verbatim coordinates |
| 43 | 43 |
http__purl_org_dc_terms_modified,modified,, |
| 44 | 44 |
dwc_terms_collectionID,collectionURL,, |
| 45 |
dwc_terms_institutionCode,specimenHolders,, |
|
| 45 |
dwc_terms_institutionCode,specimenHolderInstitutions,,
|
|
| 46 | 46 |
dwc_terms_collectionCode,collection,, |
| 47 | 47 |
dwc_terms_basisOfRecord,basisOfRecord,, |
| 48 | 48 |
dwc_terms_identifiedBy,identifiedBy,, |
| ... | ... | |
| 92 | 92 |
dwc_terms_infraspecificEpithet,infraspecificEpithet,, |
| 93 | 93 |
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,/_alt/1, |
| 94 | 94 |
conceptual_darwin_2003_1_0_DateLastModified,modified,, |
| 95 |
conceptual_darwin_2003_1_0_InstitutionCode,specimenHolders,, |
|
| 95 |
conceptual_darwin_2003_1_0_InstitutionCode,specimenHolderInstitutions,,
|
|
| 96 | 96 |
conceptual_darwin_2003_1_0_CollectionCode,collection,, |
| 97 | 97 |
conceptual_darwin_2003_1_0_CatalogNumber,accessionNumber,, |
| 98 | 98 |
conceptual_darwin_2003_1_0_ScientificName,taxonName,, |
| inputs/bien_web/observation/map.csv | ||
|---|---|---|
| 1 | 1 |
bien_web,VegCore,Filter,Comments |
| 2 | 2 |
observationID,occurrenceID,, |
| 3 | 3 |
dataSourceID,*dataSourceID,, |
| 4 |
dataSourceName,specimenHolders,, |
|
| 4 |
dataSourceName,specimenHolderInstitutions,,
|
|
| 5 | 5 |
dataSourceNamePrimary,*dataSourceNamePrimary,, |
| 6 | 6 |
plotID,locationID,, |
| 7 | 7 |
observationType,observationGranularity,, |
| inputs/NY/Ecatalog_all/map.csv | ||
|---|---|---|
| 2 | 2 |
pkey,OMIT,,"CatalogNumber, etc. is a better pkey" |
| 3 | 3 |
key,OMIT,,"CatalogNumber, etc. is a better pkey" |
| 4 | 4 |
DateLastModified,modified,, |
| 5 |
InstitutionCode,specimenHolders,, |
|
| 5 |
InstitutionCode,specimenHolderInstitutions,,
|
|
| 6 | 6 |
CollectionCode,collection,, |
| 7 | 7 |
CatalogNumber,accessionNumber,, |
| 8 | 8 |
ScientificName,taxonName,, |
| inputs/Madidi/IndividualObservation/map.csv | ||
|---|---|---|
| 16 | 16 |
CollectorString,recordedBy,/_first/1/_merge/2, |
| 17 | 17 |
CollectorStringShortened,recordedBy,/_first/2, |
| 18 | 18 |
CollectionNumber,collectorNumber,, |
| 19 |
Institutions,specimenHolders,, |
|
| 19 |
Institutions,specimenHolderInstitutions,,
|
|
| 20 | 20 |
InstitutionString,*InstitutionString,, |
| 21 | 21 |
CollectorAbbrev,recordedBy,/_first/3, |
| 22 | 22 |
CurrentDet,scientificName,, |
| inputs/Madidi/IndividualObservation/new_terms.csv | ||
|---|---|---|
| 6 | 6 |
SeniorCollector,recordedBy,/_first/1/_merge/1, |
| 7 | 7 |
CollectorString,recordedBy,/_first/1/_merge/2, |
| 8 | 8 |
CollectorStringShortened,recordedBy,/_first/2, |
| 9 |
Institutions,specimenHolders,, |
|
| 9 |
Institutions,specimenHolderInstitutions,,
|
|
| 10 | 10 |
CollectorAbbrev,recordedBy,/_first/3, |
| 11 | 11 |
CurrentDet,scientificName,, |
| 12 | 12 |
CurrentDetRank,taxonRank,, |
| inputs/.herbaria/ih/map.csv | ||
|---|---|---|
| 1 | 1 |
herbaria,VegCore,Filter,Comments |
| 2 | 2 |
eparties_key,*eparties_key,, |
| 3 | 3 |
NamOrganisation,*NamOrganisation,, |
| 4 |
acronym,specimenHolders,, |
|
| 4 |
acronym,specimenHolderInstitutions,,
|
|
| 5 | 5 |
IhhInstitutionType,*IhhInstitutionType,, |
| 6 | 6 |
NamBranch,*NamBranch,, |
| 7 | 7 |
NamDepartment,*NamDepartment,, |
| inputs/.herbaria/ih/new_terms.csv | ||
|---|---|---|
| 1 |
acronym,specimenHolders,, |
|
| 1 |
acronym,specimenHolderInstitutions,, |
|
| inputs/REMIB/Specimen/map.csv | ||
|---|---|---|
| 1 | 1 |
REMIB,VegCore,Filter,Comments |
| 2 |
acronym,specimenHolders,, |
|
| 2 |
acronym,specimenHolderInstitutions,,
|
|
| 3 | 3 |
accession_number,accessionNumber,,"Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 4 | 4 |
|
| 5 | 5 |
[1] Using the following query: |
| inputs/REMIB/Specimen/new_terms.csv | ||
|---|---|---|
| 1 |
acronym,specimenHolders,, |
|
| 1 |
acronym,specimenHolderInstitutions,,
|
|
| 2 | 2 |
long_deg,longitude_deg,"/_map:[./{""-999"",99,999,1000}=,*=*]/value",-99 is a valid longitude for Mexico
|
| 3 | 3 |
long_min,longitude_min,"/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
| 4 | 4 |
long_sec,longitude_sec,"/_map:[./{""-999"",""-99"",99,999,1000}=,*=*]/value",
|
| inputs/MO/Specimen/map.csv | ||
|---|---|---|
| 1 | 1 |
MO,VegCore,Filter,Comments |
| 2 | 2 |
CatalogNumber,accessionNumber,, |
| 3 | 3 |
DateLastModified,modified,, |
| 4 |
InstitutionCode,specimenHolders,, |
|
| 4 |
InstitutionCode,specimenHolderInstitutions,,
|
|
| 5 | 5 |
CollectionCode,collection,, |
| 6 | 6 |
ScientificName,taxonName,, |
| 7 | 7 |
BasisOfRecord,basisOfRecord,, |
| mappings/VegCore.htm | ||
|---|---|---|
| 6 | 6 |
<meta name="description" content="Redmine" /> |
| 7 | 7 |
<meta name="keywords" content="issue,bug,tracker" /> |
| 8 | 8 |
<meta content="authenticity_token" name="csrf-param" /> |
| 9 |
<meta content="cNMvLKbB6bQsSzUeVpyrvc38Cw4sOu+E31a9RTRJdjY=" name="csrf-token" />
|
|
| 9 |
<meta content="CK8lya4IdqOeRYk6DZap0b44R9vnaeZQNL9auP0cxkY=" name="csrf-token" />
|
|
| 10 | 10 |
<link rel='shortcut icon' href='/nceas/favicon.ico?1347421715' /> |
| 11 | 11 |
<link href="/nceas/stylesheets/jquery/jquery-ui-1.8.21.css?1357775071" media="all" rel="stylesheet" type="text/css" /> |
| 12 | 12 |
<link href="/nceas/stylesheets/application.css?1357775071" media="all" rel="stylesheet" type="text/css" /> |
| ... | ... | |
| 297 | 297 |
</li><li><a href="#Collection">Collection</a><ul><li><a href="#collection">collection</a><ul><li><a href="#collectionCode">collectionCode</a></li></ul> |
| 298 | 298 |
</li><li><a href="#collectionURL">collectionURL</a><ul><li><a href="#collectionID">collectionID</a></li></ul> |
| 299 | 299 |
</li></ul> |
| 300 |
</li><li><a href="#Specimen">Specimen</a><ul><li><a href="#specimenHolders">specimenHolders</a><ul><li><a href="#specimenHolder">specimenHolder</a></li><li><a href="#institutionCode_DwC">institutionCode_DwC</a></li></ul>
|
|
| 300 |
</li><li><a href="#Specimen">Specimen</a><ul><li><a href="#specimenHolderInstitutions">specimenHolderInstitutions</a><ul><li><a href="#specimenHolderInstitution">specimenHolderInstitution</a></li><li><a href="#institutionCode_DwC">institutionCode_DwC</a></li></ul>
|
|
| 301 | 301 |
</li><li><a href="#specimenHolderURL">specimenHolderURL</a><ul><li><a href="#institutionID">institutionID</a></li></ul> |
| 302 | 302 |
</li><li><a href="#institutionCode">?institutionCode</a><ul><li><a href="#Alternative-institutionCode_DwC">Alternative: institutionCode_DwC</a></li><li><a href="#Alternative-institutionCode_UNCC">Alternative: institutionCode_UNCC</a></li></ul> |
| 303 | 303 |
</li><li><a href="#specimenStampingInstitution">specimenStampingInstitution</a></li><li><a href="#specimenDonor">specimenDonor</a><ul><li><a href="#institutionCode_UNCC">institutionCode_UNCC</a></li></ul> |
| ... | ... | |
| 3701 | 3701 |
<p style="padding-left:3em;">Related: <a href="#Occurrence" class="wiki-page">Occurrence</a></p> |
| 3702 | 3702 |
|
| 3703 | 3703 |
|
| 3704 |
<a name="specimenHolders"></a> |
|
| 3705 |
<h2 style="padding-left:2em;"><a href="#specimenHolders" class="wiki-page">specimenHolders</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/621/vegbien_identifier_examples.xlsx#terms/institutionCode/where_specimen_held"><img src="_" style="font-size: small;" title="Brad Boyle" alt="Brad Boyle" /></a><a href="#specimenHolders" class="wiki-anchor">¶</a></h2>
|
|
| 3704 |
<a name="specimenHolderInstitutions"></a>
|
|
| 3705 |
<h2 style="padding-left:2em;"><a href="#specimenHolderInstitutions" class="wiki-page">specimenHolderInstitutions</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/621/vegbien_identifier_examples.xlsx#terms/institutionCode/where_specimen_held"><img src="_" style="font-size: small;" title="Brad Boyle" alt="Brad Boyle" /></a><a href="#specimenHolderInstitutions" class="wiki-anchor">¶</a></h2>
|
|
| 3706 | 3706 |
|
| 3707 | 3707 |
|
| 3708 | 3708 |
<p style="padding-left:5em;">The institution(s) holding a copy of the specimen</p> |
| ... | ... | |
| 3711 | 3711 |
<p style="padding-left:5em;">"Identifies the institution where a specimen is held. For herbaria, this will be the acronym of the herbarium. In general, use the verbatim value provided by the data provider, unless this is incorrect. For an aggregator such as GBIF, this column will contain many values corresponding to different data providers. For a primary source (e.g., New York Botanical Garden), all values should be the same (e.g., "NY"). Some herbaria incorrectly list the acronym that sent them the specimen if it was an exchange or trade. This is incorrect. Only the acronym of the herbarium providing the data should be listed here, regardless of whether they collected the specimen themselves or received it as a duplicate from another herbarium." (<a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/621/vegbien_identifier_examples.xlsx#terms/institutionCode" class="external">Brad Boyle</a>)</p> |
| 3712 | 3712 |
|
| 3713 | 3713 |
|
| 3714 |
<a name="specimenHolder"></a> |
|
| 3715 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#specimenHolder" class="wiki-page">specimenHolder</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/621/vegbien_identifier_examples.xlsx#terms/institutionCode/where_specimen_held"><img src="_" style="font-size: small;" title="Brad Boyle" alt="Brad Boyle" /></a><a href="#specimenHolder" class="wiki-anchor">¶</a></h3>
|
|
| 3714 |
<a name="specimenHolderInstitution"></a>
|
|
| 3715 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#specimenHolderInstitution" class="wiki-page">specimenHolderInstitution</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/621/vegbien_identifier_examples.xlsx#terms/institutionCode/where_specimen_held"><img src="_" style="font-size: small;" title="Brad Boyle" alt="Brad Boyle" /></a><a href="#specimenHolderInstitution" class="wiki-anchor">¶</a></h3>
|
|
| 3716 | 3716 |
|
| 3717 | 3717 |
|
| 3718 | 3718 |
<a name="institutionCode_DwC"></a> |
| 3719 | 3719 |
<h3 style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#institutionCode_DwC" class="wiki-page">institutionCode_DwC</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/#institutionCode"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#institutionCode"><img src="_" style="font-size: small;" title="?institutionCode" alt="?institutionCode" /></a><a href="#institutionCode_DwC" class="wiki-anchor">¶</a></h3> |
| 3720 | 3720 |
|
| 3721 | 3721 |
|
| 3722 |
<p style="padding-left:5em;">Compare to: <a href="#specimenIndexer" class="wiki-page">specimenIndexer</a></p>
|
|
| 3722 |
<p style="padding-left:5em;">Compare to: <a href="#specimenDonor" class="wiki-page">specimenDonor</a></p>
|
|
| 3723 | 3723 |
|
| 3724 | 3724 |
|
| 3725 | 3725 |
<a name="specimenHolderURL"></a> |
| mappings/VegCore.thesaurus.csv | ||
|---|---|---|
| 27 | 27 |
?globalUniqueIdentifier,"?occurrenceID,dataProviderRecordID" |
| 28 | 28 |
?height,"?height_m,height_ft" |
| 29 | 29 |
?heightFirstBranch,"?heightFirstBranch_m,heightFirstBranch_ft" |
| 30 |
?institutionCode,"?specimenHolders,specimenDonor" |
|
| 30 |
?institutionCode,"?specimenHolderInstitutions,specimenDonor"
|
|
| 31 | 31 |
?intercept,"?intercept_m,intercept_cm" |
| 32 | 32 |
?latitude,"?decimalLatitude,verbatimLatitude,latitude_DMS" |
| 33 | 33 |
?longitude,"?decimalLongitude,verbatimLongitude,longitude_DMS" |
| ... | ... | |
| 136 | 136 |
individualOrganismObservationID,individualObservationID |
| 137 | 137 |
individualOrganismObservationRelativeX,organismX_m |
| 138 | 138 |
individualOrganismObservationRelativeY,organismY_m |
| 139 |
institutionCode_DwC,specimenHolders |
|
| 139 |
institutionCode_DwC,specimenHolderInstitutions
|
|
| 140 | 140 |
institutionCode_UNCC,specimenDonor |
| 141 | 141 |
institutionID,specimenHolderURL |
| 142 | 142 |
interpretationType,identificationType |
| ... | ... | |
| 203 | 203 |
species_DwC,specificEpithet |
| 204 | 204 |
species_VegBank,speciesBinomial |
| 205 | 205 |
specificEpithetScore,matchedSpeciesConfidence_fraction |
| 206 |
specimenHolder,specimenHolders
|
|
| 206 |
specimenHolderInstitution,specimenHolderInstitutions
|
|
| 207 | 207 |
ssp,subspecies |
| 208 | 208 |
startX,subplotX |
| 209 | 209 |
startY,subplotY |
| mappings/VegCore.vocab.csv | ||
|---|---|---|
| 561 | 561 |
specificEpithetScore |
| 562 | 562 |
specimenDescription |
| 563 | 563 |
specimenDonor |
| 564 |
specimenHolder |
|
| 564 |
specimenHolderInstitution |
|
| 565 |
specimenHolderInstitutions |
|
| 565 | 566 |
specimenHolderURL |
| 566 |
specimenHolders |
|
| 567 | 567 |
specimenOwner |
| 568 | 568 |
specimenStampingInstitution |
| 569 | 569 |
ssp |
| inputs/TRT/Specimen/map.csv | ||
|---|---|---|
| 55 | 55 |
verbatimCoordinateSystem,coordinateUnits,, |
| 56 | 56 |
locationRemarks,locationRemarks,, |
| 57 | 57 |
genus,genus,, |
| 58 |
institutionCode,specimenHolders,, |
|
| 58 |
institutionCode,specimenHolderInstitutions,,
|
|
| 59 | 59 |
higherClassification,higherClassification,, |
| 60 | 60 |
verbatimSRS,verbatimSRS,, |
| 61 | 61 |
municipality,municipality,, |
| inputs/TRTE/Specimen/map.csv | ||
|---|---|---|
| 26 | 26 |
verbatimEventDate,verbatimEventDate,, |
| 27 | 27 |
municipality,municipality,, |
| 28 | 28 |
geodeticDatum,geodeticDatum,, |
| 29 |
institutionCode,specimenHolders,, |
|
| 29 |
institutionCode,specimenHolderInstitutions,,
|
|
| 30 | 30 |
nomenclaturalCode,nomenclaturalCode,, |
| 31 | 31 |
modified,modified,, |
| 32 | 32 |
previousIdentifications,previousIdentifications,, |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 2 | 2 |
accessionNumber,"/_if[@name=""if specimen""]/cond/_exists", |
| 3 | 3 |
dataProviderRecordID,"/_if[@name=""if specimen""]/cond/_exists", |
| 4 | 4 |
occurrenceID,"/_if[@name=""if specimen""]/cond/_exists", |
| 5 |
specimenHolders,"/_if[@name=""if specimen""]/else/source/shortname/_first/1", |
|
| 5 |
specimenHolderInstitutions,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
|
|
| 6 | 6 |
observationGranularity,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/observationtype", |
| 7 | 7 |
sourceType,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/sourcetype", |
| 8 | 8 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
| ... | ... | |
| 17 | 17 |
accessionNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
| 18 | 18 |
dataProviderRecordID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
| 19 | 19 |
occurrenceID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists", |
| 20 |
specimenHolders,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2", |
|
| 20 |
specimenHolderInstitutions,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then/_first/2",
|
|
| 21 | 21 |
collection,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1", |
| 22 | 22 |
collectionURL,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2", |
| 23 | 23 |
voucherType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left", |
| ... | ... | |
| 179 | 179 |
accessionNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 180 | 180 |
dataProviderRecordID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 181 | 181 |
occurrenceID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 182 |
specimenHolders,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2", |
|
| 183 |
specimenHolders,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value", |
|
| 182 |
specimenHolderInstitutions,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name/_first/2",
|
|
| 183 |
specimenHolderInstitutions,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_first/2/_split:[separator=""[,;] *""]/value",
|
|
| 184 | 184 |
dataProviderRecordID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 185 | 185 |
occurrenceID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode, |
| 186 | 186 |
stemCount,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemcount, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 2 | 2 |
accessionNumber,"/_if[@name=""if specimen""]/cond/_exists", |
| 3 | 3 |
dataProviderRecordID,"/_if[@name=""if specimen""]/cond/_exists", |
| 4 | 4 |
occurrenceID,"/_if[@name=""if specimen""]/cond/_exists", |
| 5 |
specimenHolders,"/_if[@name=""if specimen""]/else/source/shortname", |
|
| 5 |
specimenHolderInstitutions,"/_if[@name=""if specimen""]/else/source/shortname",
|
|
| 6 | 6 |
observationGranularity,"/_if[@name=""if specimen""]/else/source/observationtype", |
| 7 | 7 |
sourceType,"/_if[@name=""if specimen""]/else/source/sourcetype", |
| 8 | 8 |
subplot,"/location/_if[@name=""if subplot""]/cond/_exists", |
| ... | ... | |
| 17 | 17 |
accessionNumber,"/location/authorlocationcode/_if[@name=""if specimen""]/cond/_exists", |
| 18 | 18 |
dataProviderRecordID,"/location/authorlocationcode/_if[@name=""if specimen""]/cond/_exists", |
| 19 | 19 |
occurrenceID,"/location/authorlocationcode/_if[@name=""if specimen""]/cond/_exists", |
| 20 |
specimenHolders,"/location/authorlocationcode/_if[@name=""if specimen""]/then", |
|
| 20 |
specimenHolderInstitutions,"/location/authorlocationcode/_if[@name=""if specimen""]/then",
|
|
| 21 | 21 |
collection,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/then", |
| 22 | 22 |
collectionURL,"/location/authorlocationcode/_if[@name=""if catalogNumber""]/then", |
| 23 | 23 |
voucherType,"/location/authorlocationcode/_if[@name=""if indirect voucher""]/cond", |
| ... | ... | |
| 179 | 179 |
accessionNumber,"//institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 180 | 180 |
dataProviderRecordID,"//institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 181 | 181 |
occurrenceID,"//institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists", |
| 182 |
specimenHolders,"//institution_id/sourcelist/_if[@name=""if specimen""]/then/name", |
|
| 183 |
specimenHolders,"//institution_id/sourcelist/sourcename/name/_split:[separator=""[,;] *""]/value", |
|
| 182 |
specimenHolderInstitutions,"//institution_id/sourcelist/_if[@name=""if specimen""]/then/name",
|
|
| 183 |
specimenHolderInstitutions,"//institution_id/sourcelist/sourcename/name/_split:[separator=""[,;] *""]/value",
|
|
| 184 | 184 |
dataProviderRecordID,//specimenreplicate/sourceaccessioncode, |
| 185 | 185 |
occurrenceID,//specimenreplicate/sourceaccessioncode, |
| 186 | 186 |
stemCount,//plantobservation/stemcount, |
Also available in: Unified diff
mappings/VegCore.htm: Regenerated from wiki. Renamed specimenHolders to specimenHolderInstitutions to make it obvious that this is a list of institutions, such as would be in institutionCode in a DwC export.