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Revision 7866

mappings/VegCore.htm: Regenerated from wiki. Renamed specimenDonor to specimenDonorInstitution to clarify that this is an institution, not a collector.

View differences:

inputs/UNCC/Specimen/map.csv
8 8
GROUP BY herbarium, accession
9 9
HAVING count(*) > 1
10 10
-----"
11
herbarium,specimenDonor,"/_map:[UNCCD=UNCC,*=*]/value","""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."
11
herbarium,specimenDonorInstitution,"/_map:[UNCCD=UNCC,*=*]/value","""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."
12 12
family,family,,
13 13
genus,genus,,
14 14
species,specificEpithet,,
inputs/UNCC/Specimen/VegBIEN.csv
125 125
state,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
126 126
state,/location/locationplace/*_id/place/stateprovince,
127 127
filler,,"** No join mapping for *filler ** Where used, same as family"
128
herbarium,,"** No join mapping for specimenDonor/_map:[UNCCD=UNCC,*=*]/value ** ""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."
128
herbarium,,"** No join mapping for specimenDonorInstitution/_map:[UNCCD=UNCC,*=*]/value ** ""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."
129 129
leaves,,** No join mapping for *leaves ** 
130 130
root,,** No join mapping for *root ** 
131 131
sheetno,,** No join mapping for associatedMedia ** ?
inputs/UNCC/Specimen/new_terms.csv
1
herbarium,specimenDonor,"/_map:[UNCCD=UNCC,*=*]/value","""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."
1
herbarium,specimenDonorInstitution,"/_map:[UNCCD=UNCC,*=*]/value","""The name or acronym in use by the institution that donated the collection"" (https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode). UNCCD likely = UNCC database."
2 2
usdaRank,taxonRank,/_alt/1,
3 3
infrarank,taxonRank,/_alt/2,
4 4
infraname,infraspecificEpithet,,
inputs/UNCC/Specimen/unmapped_terms.csv
1
specimenDonor
1
specimenDonorInstitution
2 2
*leaves
3 3
*root
4 4
associatedMedia
mappings/VegCore.htm
6 6
<meta name="description" content="Redmine" />
7 7
<meta name="keywords" content="issue,bug,tracker" />
8 8
<meta content="authenticity_token" name="csrf-param" />
9
<meta content="CK8lya4IdqOeRYk6DZap0b44R9vnaeZQNL9auP0cxkY=" name="csrf-token" />
9
<meta content="by1c6mvQ2yuM96Ct4WikV5uFR38uVZyzTtk+KQAQCWo=" name="csrf-token" />
10 10
<link rel='shortcut icon' href='/nceas/favicon.ico?1347421715' />
11 11
<link href="/nceas/stylesheets/jquery/jquery-ui-1.8.21.css?1357775071" media="all" rel="stylesheet" type="text/css" />
12 12
<link href="/nceas/stylesheets/application.css?1357775071" media="all" rel="stylesheet" type="text/css" />
......
300 300
</li><li><a href="#Specimen">Specimen</a><ul><li><a href="#specimenHolderInstitutions">specimenHolderInstitutions</a><ul><li><a href="#specimenHolderInstitution">specimenHolderInstitution</a></li><li><a href="#institutionCode_DwC">institutionCode_DwC</a></li></ul>
301 301
</li><li><a href="#specimenHolderURL">specimenHolderURL</a><ul><li><a href="#institutionID">institutionID</a></li></ul>
302 302
</li><li><a href="#institutionCode">?institutionCode</a><ul><li><a href="#Alternative-institutionCode_DwC">Alternative: institutionCode_DwC</a></li><li><a href="#Alternative-institutionCode_UNCC">Alternative: institutionCode_UNCC</a></li></ul>
303
</li><li><a href="#specimenStampingInstitution">specimenStampingInstitution</a></li><li><a href="#specimenDonor">specimenDonor</a><ul><li><a href="#institutionCode_UNCC">institutionCode_UNCC</a></li></ul>
303
</li><li><a href="#specimenStampingInstitution">specimenStampingInstitution</a></li><li><a href="#specimenDonorInstitution">specimenDonorInstitution</a><ul><li><a href="#institutionCode_UNCC">institutionCode_UNCC</a></li></ul>
304 304
</li><li><a href="#specimenOwner">specimenOwner</a><ul><li><a href="#ownerInstitutionCode">ownerInstitutionCode</a></li></ul>
305 305
</li><li><a href="#barcode">barcode</a></li><li><a href="#accessionNumber">accessionNumber</a><ul><li><a href="#accession">accession</a></li><li><a href="#museumAccessionNumber">museumAccessionNumber</a></li><li><a href="#catalogNumber">catalogNumber</a></li></ul>
306 306
</li><li><a href="#collectorNumber">collectorNumber</a><ul><li><a href="#collectionNumber">collectionNumber</a></li><li><a href="#recordNumber">recordNumber</a></li><li><a href="#fieldNumber_DwC_classic">fieldNumber_DwC_classic</a></li></ul>
......
3455 3455

  
3456 3456

  
3457 3457
	<a name="phenology"></a>
3458
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#phenology" class="wiki-page">phenology</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&#38;table=PlotObservations&#38;target=tbl_structure.php#phenology"><img src="_" style="font-size: small;" title="SALVIAS:soilAcidity" alt="SALVIAS:soilAcidity" /></a><a href="#phenology" class="wiki-anchor">&para;</a></h3>
3458
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#phenology" class="wiki-page">phenology</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&#38;table=PlotObservations&#38;target=tbl_structure.php#phenology"><img src="_" style="font-size: small;" title="SALVIAS" alt="SALVIAS" /></a><a href="#phenology" class="wiki-anchor">&para;</a></h3>
3459 3459

  
3460 3460

  
3461 3461
	<a name="behavior"></a>
......
3545 3545
	<p style="padding-left:3em;">Related: <a href="#Stem" class="wiki-page">Stem</a>, <a href="#IndividualObservation" class="wiki-page">IndividualObservation</a></p>
3546 3546

  
3547 3547

  
3548
	<p style="padding-left:3em;">This is an immovable type of <a href="#TaxonOccurrence" class="wiki-page">TaxonOccurrence</a></p>
3549

  
3550

  
3548 3551
	<a name="authorStemCode"></a>
3549 3552
<h2  style="padding-left:2em;"><a href="#authorStemCode" class="wiki-page">authorStemCode</a><a href="#authorStemCode" class="wiki-anchor">&para;</a></h2>
3550 3553

  
......
3698 3701
	<p style="padding-left:3em;">A "part of a plant" (<a href="http://en.wikipedia.org/wiki/Specimen" class="external">Wikipedia</a>) which was collected from it</p>
3699 3702

  
3700 3703

  
3704
	<p style="padding-left:3em;">This is a movable type of <a href="#TaxonOccurrence" class="wiki-page">TaxonOccurrence</a></p>
3705

  
3706

  
3701 3707
	<p style="padding-left:3em;">Related: <a href="#Occurrence" class="wiki-page">Occurrence</a></p>
3702 3708

  
3703 3709

  
......
3719 3725
<h3  style="padding-left:4em;"><img src="_" style="padding: 0 0.3em 3pt 0.65em;font-weight: normal;" title="Synonym:" alt="Synonym:" /> <a href="#institutionCode_DwC" class="wiki-page">institutionCode_DwC</a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="http://rs.tdwg.org/dwc/terms/#institutionCode"><img src="_" style="font-size: small;" title="DwC" alt="DwC" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="alternative of" alt="alternative of" /> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#institutionCode"><img src="_" style="font-size: small;" title="?institutionCode" alt="?institutionCode" /></a><a href="#institutionCode_DwC" class="wiki-anchor">&para;</a></h3>
3720 3726

  
3721 3727

  
3722
	<p style="padding-left:5em;">Compare to: <a href="#specimenDonor" class="wiki-page">specimenDonor</a></p>
3728
	<p style="padding-left:5em;">Compare to: <a href="#specimenDonorInstitution" class="wiki-page">specimenDonorInstitution</a></p>
3723 3729

  
3724 3730

  
3725 3731
	<a name="specimenHolderURL"></a>
......
3749 3755
	<p style="padding-left:5em;">The institution that stamped an <a href="#accessionNumber" class="wiki-page">accession number</a> or <a href="#barcode" class="wiki-page">barcode</a> on the specimen</p>
3750 3756

  
3751 3757

  
3752
	<a name="specimenDonor"></a>
3753
<h2  style="padding-left:2em;"><a href="#specimenDonor" class="wiki-page">specimenDonor</a> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Global_IDs"><img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="global ID" alt="global ID" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode/institution_that_donated_collection"><img src="_" style="font-size: small;" title="Bob Peet" alt="Bob Peet" /></a> <img src="_" style="font-size: small;" title="|" alt="|" /> <a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/626/vegbien_identifiers.xlsx#terms/institutionCode/acronym_that_sent_specimen"><img src="_" style="font-size: small;" title="Brad Boyle" alt="Brad Boyle" /></a><a href="#specimenDonor" class="wiki-anchor">&para;</a></h2>
3758
	<a name="specimenDonorInstitution"></a>
3759
<h2  style="padding-left:2em;"><a href="#specimenDonorInstitution" class="wiki-page">specimenDonorInstitution</a> <a href="https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Global_IDs"><img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;font-style: italic;" title="global ID" alt="global ID" /></a> <img src="_" style="padding-left: 1em;font-size: small;font-weight: normal;" title="from" alt="from" /> <a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode/institution_that_donated_collection"><img src="_" style="font-size: small;" title="Bob Peet" alt="Bob Peet" /></a> <img src="_" style="font-size: small;" title="|" alt="|" /> <a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/626/vegbien_identifiers.xlsx#terms/institutionCode/acronym_that_sent_specimen"><img src="_" style="font-size: small;" title="Brad Boyle" alt="Brad Boyle" /></a><a href="#specimenDonorInstitution" class="wiki-anchor">&para;</a></h2>
3754 3760

  
3755 3761

  
3756 3762
	<p style="padding-left:5em;">"The name or acronym in use by the institution that donated the collection" (<a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/593/UNCC-validation-Peet.xlsx#institutionCode" class="external">Bob Peet</a>)<br />"the acronym [of the donor institution] that sent [...] the specimen if it was an exchange or trade" (<a href="https://projects.nceas.ucsb.edu/nceas/attachments/download/626/vegbien_identifiers.xlsx#terms/institutionCode/acronym_that_sent_specimen" class="external">Brad Boyle</a>)</p>
mappings/VegCore.thesaurus.csv
27 27
?globalUniqueIdentifier,"?occurrenceID,dataProviderRecordID"
28 28
?height,"?height_m,height_ft"
29 29
?heightFirstBranch,"?heightFirstBranch_m,heightFirstBranch_ft"
30
?institutionCode,"?specimenHolderInstitutions,specimenDonor"
30
?institutionCode,"?specimenHolderInstitutions,specimenDonorInstitution"
31 31
?intercept,"?intercept_m,intercept_cm"
32 32
?latitude,"?decimalLatitude,verbatimLatitude,latitude_DMS"
33 33
?longitude,"?decimalLongitude,verbatimLongitude,longitude_DMS"
......
137 137
individualOrganismObservationRelativeX,organismX_m
138 138
individualOrganismObservationRelativeY,organismY_m
139 139
institutionCode_DwC,specimenHolderInstitutions
140
institutionCode_UNCC,specimenDonor
140
institutionCode_UNCC,specimenDonorInstitution
141 141
institutionID,specimenHolderURL
142 142
interpretationType,identificationType
143 143
isBadLatLong,latLongDomainInvalid
mappings/VegCore.vocab.csv
560 560
specificEpithet
561 561
specificEpithetScore
562 562
specimenDescription
563
specimenDonor
563
specimenDonorInstitution
564 564
specimenHolderInstitution
565 565
specimenHolderInstitutions
566 566
specimenHolderURL

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