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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7564 almost 12 years Aaron Marcuse-Kubitza lib/common.Makefile: remote server: Use jupiter...
  bin 7864 over 11 years Aaron Marcuse-Kubitza make_analytical_db: Support the $log flag, whic...
  config 7801 over 11 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  inputs 7866 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Regenerated from wiki. Re...
  lib 7728 over 11 years Aaron Marcuse-Kubitza lib/common.Makefile: rsync: $(rsync): Also excl...
  mappings 7866 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Regenerated from wiki. Re...
  planning 7786 over 11 years Aaron Marcuse-Kubitza Added planning/use_cases/rare_species.png
  schemas 7868 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: analytical_plot: Added spe...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 12.1 KB 7836 over 11 years Aaron Marcuse-Kubitza root Makefile: Datasources: scrub: Removed no l...
README.TXT 19.1 KB 7867 over 11 years Aaron Marcuse-Kubitza README.TXT: Full database import: In PostgreSQL...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 almost 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
7868 03/06/2013 09:29 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_plot: Added specimens fields at the end, for use by plots data that also tracks specimens (e.g. Madidi, SALVIAS)

7867 03/06/2013 09:21 PM Aaron Marcuse-Kubitza

README.TXT: Full database import: In PostgreSQL: Removed tests related to unscrubbed_taxondetermination_view and TNRS taxondeterminations, which are no longer needed because TNRS is joined directly to analytical_stem_view

7866 03/06/2013 08:36 PM Aaron Marcuse-Kubitza

mappings/VegCore.htm: Regenerated from wiki. Renamed specimenDonor to specimenDonorInstitution to clarify that this is an institution, not a collector.

7865 03/06/2013 08:30 PM Aaron Marcuse-Kubitza

inputs/UNCC/Specimen/map.csv: Mapped flower, fruit -> reproductiveCondition using translation is from e-mail conv between Jim Matthews at Habitat Assessment and Bob Peet on 2010-12-2~3

7864 03/06/2013 08:17 PM Aaron Marcuse-Kubitza

make_analytical_db: Support the $log flag, which toggles output to the terminal or a log file

7863 03/06/2013 07:50 PM Aaron Marcuse-Kubitza

inputs/import.stats.xls: Updated import times. The core import time has dropped by more than half (!) to ~12 hours, now that the TNRS scrubbing is added using a simple LEFT JOIN, instead of being pushed through the normalized schema. Not since October has the import been this fast!

7862 03/06/2013 07:27 PM Aaron Marcuse-Kubitza

import_times: When there are no matching logs, exit with status 0 instead of 1 because this is a normal condition

7861 03/06/2013 07:26 PM Aaron Marcuse-Kubitza

import_times: Fixed bug where sed would wait for user input from stdin when there were no matching logs

7860 03/06/2013 07:22 PM Aaron Marcuse-Kubitza

README.TXT: Full database import: record the import times in inputs/import.stats.xls: If the row counts do not match up: Added step to get the datasource names from the log file footers

7859 03/06/2013 07:12 PM Aaron Marcuse-Kubitza

inputs/UNCC/Specimen/map.csv: cultivated: assume anything non-NULL to be cultivated, so that we err on the side of excluding possibly-cultivated specimens

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