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root/mappings/for_review/DwC-VegBIEN.specimens.csv @ 789

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"DwC::[@xmlns:dcterms=""http://purl.org/dc/terms/""]/list/",VegBIEN:/specimenreplicate,Comments,Order
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coordinatePrecision,//location/locationaccuracy,,89
3 
country,"//*_id/namedplace[placesystem=""area|country|territory""]/placename",Brad: Required; reject record if this field NULL,63
4 
stateProvince,"//*_id/namedplace[placesystem=""region|state|province""]/placename",,65
5 
county,//*_id/namedplace[placesystem=county]/placename,,66
6 
verbatimLocality,//namedplace/placedescription,"Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
7 
verbatimLatitude,//location/reallatitude,,81
8 
verbatimLongitude,//location/reallongitude,,82
9 
maximumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
10 
minimumElevationInMeters,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
11 
eventDate,//locationevent/obsstartdate/_*/date,,44
12 763 aaronmk 
eventDate/_alt/1,//locationevent/obsstartdate/_*/date/_alt/1,,44
13 
eventDate/_alt/2/_date/day,//locationevent/obsstartdate/_*/date/_alt/2/_date/day,,44
14 
eventDate/_alt/2/_date/month,//locationevent/obsstartdate/_*/date/_alt/2/_date/month,,44
15 
eventDate/_alt/2/_date/year,//locationevent/obsstartdate/_*/date/_alt/2/_date/year,,44
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maximumDepthInMeters,//waterdepth/max,,75
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minimumDepthInMeters,//waterdepth/min,,74
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habitat,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
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bien.plantFungusDescription,"//stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=plantFungusDescription]]/definedvalue",,
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sex,"//taxonoccurrence/taxondetermination[rolecode=identifier]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
21 
dateIdentified,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_*/date,,120
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dateIdentified/_alt/1,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_*/date/_alt/1,,120
23 
dateIdentified/_alt/2/_date/day,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_*/date/_alt/2/_date/day,,120
24 
dateIdentified/_alt/2/_date/month,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_*/date/_alt/2/_date/month,,120
25 
dateIdentified/_alt/2/_date/year,//taxonoccurrence/taxondetermination[rolecode=identifier]/determinationdate/_*/date/_alt/2/_date/year,,120
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identifiedBy,"//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
27 
fieldNotes,//taxonoccurrence/taxondetermination[rolecode=identifier]/notes,"Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54
28 
scientificName,//taxonoccurrence/taxondetermination[rolecode=identifier]/*_id/plantconcept/*_id/*/plantname/_alt/1,"Brad: Bob, Nick, please is this mapping OK?",134
29 
scientificNameAuthorship,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
30 
class,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname",,144
31 
family,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname",,146
32 
genus,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname",,147
33 
kingdom,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname",,142
34 
order,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname",,145
35 
specificEpithet,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname",,149
36 
phylum,"//taxonoccurrence/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname",,143
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occurrenceID,"/{/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
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fieldNumber,/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
39 
individualID,/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX",24
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georeferencedBy,/verbatimcollectorname,Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
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institutionCode,/{museum_id/party/organizationname/_name/first},,11
42 
collectionCode,"/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
43 
acceptedNameUsage,,,135
44 
acceptedNameUsageID,,,128
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associatedMedia,,,36
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associatedOccurrences,,,38
47 
associatedReferences,,,37
48 
associatedSequences,,,39
49 
associatedTaxa,,,40
50 
basisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
51 
bed,,,117
52 
behavior,,,29
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catalogNumber,,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
54 
collectionID,,,9
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continent,,Brad: OMIT,59
56 
coordinateUncertaintyInMeters,,,88
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countryCode,,,64
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dataGeneralizations,,,17
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datasetID,,,10
60 
datasetName,,,13
61 
day,,Brad: OMIT,50
62 
dcterms:accessRights,,,5
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dcterms:bibliographicCitation,,,6
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dcterms:language,,,2
65 
dcterms:modified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
66 
dcterms:references,,,7
67 
dcterms:rights,,,3
68 
dcterms:rightsHolder,,,4
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dcterms:type,,,0
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decimalLatitude,,,85
71 
decimalLongitude,,,86
72 
disposition,,,33
73 
dynamicProperties,,,18
74 
earliestAgeOrLowestStage,,,109
75 
earliestEonOrLowestEonothem,,,101
76 
earliestEpochOrLowestSeries,,,107
77 
earliestEraOrLowestErathem,,,103
78 
earliestPeriodOrLowestSystem,,,105
79 
endDayOfYear,,,47
80 
establishmentMeans,,,30
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eventID,,,41
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eventRemarks,,,55
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eventTime,,Brad: OMIT,45
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footprintSRS,,,92
85 
footprintSpatialFit,,,93
86 
footprintWKT,,,91
87 
formation,,,115
88 
geodeticDatum,,,87
89 
geologicalContextID,,,100
90 
georeferenceProtocol,,,96
91 741 aaronmk 
georeferenceRemarks,,,99
92 
georeferenceSources,,,97
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georeferenceVerificationStatus,,,98
94 
georeferencedDate,,,95
95 
group,,,114
96 
higherClassification,,,141
97 
higherGeography,,,58
98 
higherGeographyID,,,57
99 
highestBiostratigraphicZone,,,112
100 
identificationID,,,118
101 
identificationQualifier,,,124
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identificationReferences,,,121
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identificationRemarks,,,123
104 
identificationVerificationStatus,,,122
105 
individualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
106 
informationWithheld,,,16
107 
infraspecificEpithet,,,150
108 
institutionID,,,8
109 
island,,,62
110 
islandGroup,,,61
111 
latestAgeOrHighestStage,,,110
112 
latestEonOrHighestEonothem,,,102
113 
latestEpochOrHighestSeries,,,108
114 
latestEraOrHighestErathem,,,104
115 
latestPeriodOrHighestSystem,,,106
116 
lifeStage,,,27
117 
lithostratigraphicTerms,,,113
118 
locality,,,68
119 
locationAccordingTo,,,78
120 
locationID,,,56
121 
locationRemarks,,,79
122 
lowestBiostratigraphicZone,,,111
123 
maximumDistanceAboveSurfaceInMeters,,,77
124 
measurementAccuracy,,,169
125 
measurementDeterminedBy,,,172
126 
measurementDeterminedDate,,,171
127 
measurementID,,,166
128 
measurementMethod,,,173
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measurementRemarks,,,174
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measurementType,,,167
131 
measurementUnit,,,170
132 
measurementValue,,,168
133 
member,,,116
134 
minimumDistanceAboveSurfaceInMeters,,,76
135 
month,,,49
136 
municipality,,,67
137 
nameAccordingTo,,,138
138 
nameAccordingToID,,,131
139 
namePublishedIn,,,139
140 
namePublishedInID,,,132
141 
namePublishedInYear,,,140
142 
nomenclaturalCode,,,155
143 
nomenclaturalStatus,,,157
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occurrenceRemarks,,,21
145 745 aaronmk 
occurrenceStatus,,,31
146 
originalNameUsage,,,137
147 
originalNameUsageID,,,130
148 
otherCatalogNumbers,,,34
149 741 aaronmk 
ownerInstitutionCode,,,14
150 745 aaronmk 
parentNameUsage,,,136
151 
parentNameUsageID,,,129
152 
pointRadiusSpatialFit,,,90
153 
preparations,,Brad: OMIT,32
154 
previousIdentifications,,Brad: OMIT,35
155 
recordNumber,,,22
156 
recordedBy,,,23
157 
relatedResourceID,,Brad: OMIT,161
158 
relationshipAccordingTo,,,163
159 741 aaronmk 
relationshipEstablishedDate,,,164
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relationshipOfResource,,Brad: OMIT,162
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relationshipRemarks,,,165
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reproductiveCondition,,,28
163 
resourceID,,,160
164 
resourceRelationshipID,,,159
165 
samplingEffort,,,43
166 
samplingProtocol,,,42
167 
scientificNameID,,,127
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startDayOfYear,,,46
169 
subgenus,,,148
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taxonConceptID,,,133
171 741 aaronmk 
taxonID,,,126
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taxonRank,,,151
173 
taxonRemarks,,,158
174 
taxonomicStatus,,,156
175 
typeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
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verbatimCoordinateSystem,,,83
177 745 aaronmk 
verbatimCoordinates,,,80
178 741 aaronmk 
verbatimDepth,,,73
179 
verbatimElevation,,,70
180 
verbatimEventDate,,,51
181 745 aaronmk 
verbatimSRS,,,84
182 
verbatimTaxonRank,,,152
183 
vernacularName,,,154
184 
waterBody,,,60
185 
year,,,48