| 1 |
7876
|
aaronmk
|
<?php
|
| 2 |
|
|
require_once dirname(__FILE__)."/util.php";
|
| 3 |
|
|
|
| 4 |
|
|
# config
|
| 5 |
7879
|
aaronmk
|
$alias = "j.mp/vegpath";
|
| 6 |
7876
|
aaronmk
|
|
| 7 |
|
|
function by_prefix($url, $main_url=null)
|
| 8 |
|
|
{
|
| 9 |
|
|
if (!isset($main_url)) $main_url = $url;
|
| 10 |
|
|
|
| 11 |
|
|
return function($path) use($url, $main_url)
|
| 12 |
|
|
{
|
| 13 |
|
|
return $path ? $url.$path : $main_url;
|
| 14 |
|
|
};
|
| 15 |
|
|
}
|
| 16 |
|
|
|
| 17 |
|
|
$h_level = 4;
|
| 18 |
|
|
$path = parse_mixed_path($_SERVER["QUERY_STRING"]);
|
| 19 |
|
|
$ref = strtolower($path->head);
|
| 20 |
|
|
|
| 21 |
|
|
function add_ref($name, $suffix, $url_func)
|
| 22 |
|
|
{
|
| 23 |
|
|
global $alias, $h_level, $path, $ref;
|
| 24 |
|
|
if (is_string($url_func)) $url_func = by_prefix($url_func);
|
| 25 |
|
|
|
| 26 |
|
|
print("<h".$h_level."><code>".$alias.'#<big><a href="http://'.$alias
|
| 27 |
|
|
."#".$name.'">'.$name."</a></big><i>".$suffix."</i></code></h".$h_level.">\n");
|
| 28 |
|
|
if ($ref === strtolower($name)) # found match, so redirect
|
| 29 |
|
|
{
|
| 30 |
|
|
header("Location: ".strip_url($url_func($path->tail)));
|
| 31 |
|
|
ob_end_flush();
|
| 32 |
|
|
print('<h4 class="progress">Loading '.$name."...</h4>\n");
|
| 33 |
|
|
exit;
|
| 34 |
|
|
}
|
| 35 |
|
|
}
|
| 36 |
|
|
|
| 37 |
|
|
function fragment_override($url, $fragment=null)
|
| 38 |
|
|
{
|
| 39 |
|
|
return function($path) use($url, $fragment)
|
| 40 |
|
|
{
|
| 41 |
|
|
if (!isset($fragment))
|
| 42 |
|
|
{
|
| 43 |
|
|
$path = parse_dot_path($path);
|
| 44 |
|
|
$fragment = $path->head;
|
| 45 |
|
|
$path = $path->tail;
|
| 46 |
|
|
}
|
| 47 |
|
|
if ($path) $url .= "?".$path;
|
| 48 |
|
|
return $url."#".$fragment;
|
| 49 |
|
|
};
|
| 50 |
|
|
}
|
| 51 |
|
|
|
| 52 |
|
|
function phpPgAdmin($url)
|
| 53 |
|
|
{
|
| 54 |
|
|
return function($path) use($url)
|
| 55 |
|
|
{
|
| 56 |
|
|
$path = parse_dot_path($path);
|
| 57 |
7886
|
aaronmk
|
$subject = "schema";
|
| 58 |
7876
|
aaronmk
|
if ($path->head)
|
| 59 |
|
|
{
|
| 60 |
|
|
$url .= "&table=".$path->head;
|
| 61 |
7886
|
aaronmk
|
if ($path->tail)
|
| 62 |
|
|
{
|
| 63 |
|
|
$url .= "&column=".$path->tail;
|
| 64 |
|
|
$subject = "column";
|
| 65 |
|
|
}
|
| 66 |
|
|
else $subject = "table";
|
| 67 |
7876
|
aaronmk
|
}
|
| 68 |
7886
|
aaronmk
|
return $url."&subject=".$subject;
|
| 69 |
7876
|
aaronmk
|
};
|
| 70 |
|
|
}
|
| 71 |
|
|
|
| 72 |
7893
|
aaronmk
|
function phpMyAdmin($url)
|
| 73 |
|
|
{
|
| 74 |
|
|
return function($path) use($url)
|
| 75 |
|
|
{
|
| 76 |
|
|
$path = parse_dot_path($path);
|
| 77 |
|
|
$target = "db_structure";
|
| 78 |
|
|
if ($path->head)
|
| 79 |
|
|
{
|
| 80 |
|
|
$url .= "&table=".$path->head;
|
| 81 |
|
|
if ($path->tail)
|
| 82 |
|
|
{
|
| 83 |
|
|
$url .= "&column=".$path->tail;
|
| 84 |
|
|
$target = "tbl_alter";
|
| 85 |
|
|
}
|
| 86 |
|
|
else $target = "tbl_structure";
|
| 87 |
|
|
}
|
| 88 |
|
|
return $url."&target=".$target;
|
| 89 |
|
|
};
|
| 90 |
|
|
}
|
| 91 |
|
|
|
| 92 |
7876
|
aaronmk
|
function VegBank($url)
|
| 93 |
|
|
{
|
| 94 |
|
|
return function($path) use($url)
|
| 95 |
|
|
{
|
| 96 |
|
|
$path = parse_dot_path($path);
|
| 97 |
7887
|
aaronmk
|
if ($path->head) $url .= "/vegbank/views/dba_tabledescription_detail.jsp?view=detail&entity=dba_tabledescription&where=where_tablename&wparam=".$path->head."#".$path->tail;
|
| 98 |
7876
|
aaronmk
|
else $url .= "/get/index/dba_tabledescription";
|
| 99 |
|
|
return $url;
|
| 100 |
|
|
};
|
| 101 |
|
|
}
|
| 102 |
|
|
|
| 103 |
|
|
ob_start(); // delay output in case there is a redirect
|
| 104 |
|
|
?>
|
| 105 |
|
|
<html>
|
| 106 |
|
|
<head>
|
| 107 |
7881
|
aaronmk
|
<title>VegPath</title>
|
| 108 |
7876
|
aaronmk
|
<link rel="stylesheet" type="text/css" href="main.css" />
|
| 109 |
|
|
<style type="text/css">
|
| 110 |
|
|
h1 {color: green;}
|
| 111 |
|
|
</style>
|
| 112 |
|
|
<script type="text/javascript" src="util.js"></script>
|
| 113 |
|
|
</head>
|
| 114 |
|
|
<body>
|
| 115 |
7880
|
aaronmk
|
<h1>VegPath <small>human-readable URLs for vegetation resources</small></h1>
|
| 116 |
7882
|
aaronmk
|
<div>Supported URL patterns: <small><i>(elements can be left out successively from the end of the URL)</i></small></div>
|
| 117 |
7876
|
aaronmk
|
<blockquote>
|
| 118 |
|
|
<?php
|
| 119 |
|
|
# add and list URLs
|
| 120 |
|
|
print("<h2>Terms</h2>");
|
| 121 |
|
|
{
|
| 122 |
|
|
print("<blockquote>\n");
|
| 123 |
|
|
print("<h3>Exchange schemas</h3>");
|
| 124 |
|
|
{
|
| 125 |
|
|
print("<blockquote>\n");
|
| 126 |
|
|
add_ref("VegCore", ".table.column", "https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#");
|
| 127 |
|
|
add_ref("DwC", ".term", "http://rs.tdwg.org/dwc/terms/#");
|
| 128 |
|
|
{
|
| 129 |
|
|
print("<blockquote>\n"); $h_level++;
|
| 130 |
|
|
add_ref("DwC-history", ".term", "http://rs.tdwg.org/dwc/terms/history/#");
|
| 131 |
|
|
print("</blockquote>\n"); $h_level--;
|
| 132 |
|
|
}
|
| 133 |
|
|
add_ref("TCS", "/XPath", "http://www.tdwg.org/standards/117/download/#/v101.xsd#");
|
| 134 |
|
|
add_ref("VegX", "/XPath", "http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#");
|
| 135 |
|
|
print("</blockquote>\n");
|
| 136 |
|
|
}
|
| 137 |
|
|
print("<h3>Aggregators</h3>");
|
| 138 |
|
|
{
|
| 139 |
|
|
print("<blockquote>\n");
|
| 140 |
|
|
add_ref("VegBank", ".table.column", VegBank("http://vegbank.org"));
|
| 141 |
|
|
add_ref("SALVIAS", ".table.column", "http://salvias.net/Documents/salvias_data_dictionary.html#");
|
| 142 |
7894
|
aaronmk
|
add_ref("BIEN2", ".table.column", phpMyAdmin("http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=bien_web"));
|
| 143 |
7876
|
aaronmk
|
add_ref("VegBIEN", ".table.column", phpPgAdmin("http://vegbiendev.nceas.ucsb.edu/phppgadmin/redirect.php?server=localhost%3A5432%3Aallow&database=vegbien&schema=public"));
|
| 144 |
|
|
print("</blockquote>\n");
|
| 145 |
|
|
}
|
| 146 |
|
|
print("<h3>Primary databases</h3>");
|
| 147 |
|
|
{
|
| 148 |
|
|
print("<blockquote>\n");
|
| 149 |
|
|
add_ref("TNRS", ".term", fragment_override("http://tnrs.iplantcollaborative.org/instructions.html", "download_results"));
|
| 150 |
|
|
print("</blockquote>\n");
|
| 151 |
|
|
}
|
| 152 |
|
|
print("</blockquote>\n");
|
| 153 |
|
|
}
|
| 154 |
|
|
print("<h2>Data</h2>");
|
| 155 |
|
|
{
|
| 156 |
|
|
print("<blockquote>\n");
|
| 157 |
7883
|
aaronmk
|
add_ref("IH", ".herbarium_code", by_prefix("http://sweetgum.nybg.org/ih/herbarium_list.php?QueryName=DetailedQuery&Restriction=NamPartyType+%3D+%27IH+Herbarium%27&col_NamOrganisationAcronym=",
|
| 158 |
7876
|
aaronmk
|
"http://sweetgum.nybg.org/ih/"));
|
| 159 |
|
|
print("</blockquote>\n");
|
| 160 |
|
|
}
|
| 161 |
|
|
?>
|
| 162 |
|
|
<script type="text/javascript">
|
| 163 |
|
|
var loc = document.location
|
| 164 |
|
|
if (loc.hash)
|
| 165 |
|
|
{
|
| 166 |
|
|
var fragment = rm_prefix('#', loc.hash)
|
| 167 |
|
|
document.write('<h4 class="progress">Loading '+fragment+'...</h4>')
|
| 168 |
|
|
document.location = '?'+fragment
|
| 169 |
|
|
}
|
| 170 |
|
|
</script>
|
| 171 |
|
|
</blockquote>
|
| 172 |
|
|
</body>
|
| 173 |
|
|
</html>
|
| 174 |
|
|
<?php
|
| 175 |
|
|
ob_end_flush();
|
| 176 |
|
|
?>
|
