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7876
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aaronmk
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<?php
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require_once dirname(__FILE__)."/util.php";
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# config
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7940
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aaronmk
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$alias = "path.vg/";
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7876
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aaronmk
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function by_prefix($url, $main_url=null)
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{
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if (!isset($main_url)) $main_url = $url;
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return function($path) use($url, $main_url)
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{
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return $path ? $url.$path : $main_url;
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};
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}
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7904
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aaronmk
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$h_level = 5;
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7876
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aaronmk
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$path = parse_mixed_path($_SERVER["QUERY_STRING"]);
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7939
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aaronmk
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$ns = strtolower($path->head);
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7876
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aaronmk
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7939
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aaronmk
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function add_ns($name, $path_pat, $url_func)
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7876
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aaronmk
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{
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7939
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aaronmk
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global $alias, $h_level, $path, $ns;
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7876
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aaronmk
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if (is_string($url_func)) $url_func = by_prefix($url_func);
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7909
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aaronmk
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print("<h".$h_level.' id="'.$name.'">'.$alias.'<big><a href="http://'.$alias
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7938
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aaronmk
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.$name.'">'.$name."</a></big><i>".$path_pat."</i></h".$h_level.">\n");
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7939
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aaronmk
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if ($ns === strtolower($name)) # found match, so redirect
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7876
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aaronmk
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{
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header("Location: ".strip_url($url_func($path->tail)));
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ob_end_flush();
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exit;
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}
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}
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7937
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aaronmk
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function custom_separator($url, $sep, $main_url=null)
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7910
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aaronmk
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{
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7914
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aaronmk
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if (!isset($main_url)) $main_url = $url;
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return function($path) use($url, $sep, $main_url)
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7910
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aaronmk
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{
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7914
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aaronmk
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if ($path === "") return $main_url;
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7910
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aaronmk
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$path = parse_dot_path($path);
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return $url.join_non_empty($sep, array($path->head, $path->tail));
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};
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}
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7876
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aaronmk
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function fragment_override($url, $fragment=null)
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{
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return function($path) use($url, $fragment)
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{
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if (!isset($fragment))
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{
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$path = parse_dot_path($path);
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$fragment = $path->head;
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$path = $path->tail;
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}
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7902
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aaronmk
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if ($path !== "") $url .= "?".$path;
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7876
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aaronmk
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return $url."#".$fragment;
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};
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}
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7934
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aaronmk
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function phpPgAdmin($url, $table=null)
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7876
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aaronmk
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{
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7934
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aaronmk
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return function($path) use($url, $table)
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7876
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aaronmk
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{
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7934
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aaronmk
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$path = join_non_empty(".", array($table, $path));
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7876
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aaronmk
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$path = parse_dot_path($path);
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7886
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aaronmk
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$subject = "schema";
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7902
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aaronmk
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if ($path->head !== "")
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7876
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aaronmk
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{
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$url .= "&table=".$path->head;
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7902
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aaronmk
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if ($path->tail !== "")
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7886
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aaronmk
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{
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$url .= "&column=".$path->tail;
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$subject = "column";
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}
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else $subject = "table";
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7876
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aaronmk
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}
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7895
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aaronmk
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$url .= "&subject=".$subject;
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return $url;
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7876
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aaronmk
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};
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}
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7934
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aaronmk
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function phpMyAdmin($url, $table=null)
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7893
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aaronmk
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{
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7934
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aaronmk
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return function($path) use($url, $table)
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| 88 |
7893
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aaronmk
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{
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7934
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aaronmk
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$path = join_non_empty(".", array($table, $path));
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7893
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aaronmk
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$path = parse_dot_path($path);
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$target = "db_structure";
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7902
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aaronmk
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if ($path->head !== "")
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7893
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aaronmk
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{
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$url .= "&table=".$path->head;
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7902
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aaronmk
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if ($path->tail !== "") $url .= "&column=".$path->tail;
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7899
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aaronmk
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$target = "tbl_structure";
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7893
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aaronmk
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}
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7896
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aaronmk
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$url .= "&target=".$target.".php";
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7895
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aaronmk
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return $url;
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7893
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aaronmk
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};
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}
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7876
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aaronmk
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ob_start(); // delay output in case there is a redirect
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?>
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<html>
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<head>
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7881
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aaronmk
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<title>VegPath</title>
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7876
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aaronmk
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<link rel="stylesheet" type="text/css" href="main.css" />
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<style type="text/css">
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h1 {color: green;}
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</style>
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<script type="text/javascript" src="util.js"></script>
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</head>
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<body>
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7880
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aaronmk
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<h1>VegPath <small>human-readable URLs for vegetation resources</small></h1>
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7923
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aaronmk
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<div>Supported URL patterns: <small>(elements in <i>italics</i> are optional)</small></div>
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7931
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aaronmk
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<p></p>
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7876
|
aaronmk
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<?php
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# add and list URLs
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7920
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aaronmk
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| 121 |
7924
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aaronmk
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$Redmine = "https://projects.nceas.ucsb.edu/nceas/projects/bien";
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| 122 |
7928
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aaronmk
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$Redmine_svn = $Redmine."/repository/raw";
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7924
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aaronmk
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| 124 |
7920
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aaronmk
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$nimoy = "http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php";
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| 125 |
7921
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aaronmk
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function nimoy_db($db) { global $nimoy; return phpMyAdmin($nimoy."?db=".$db); }
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| 126 |
7936
|
aaronmk
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$IH_db = phpMyAdmin($nimoy."?db=bien3_adb", "ih");
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| 128 |
7944
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aaronmk
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$SALVIAS = "http://salvias.net/Documents/salvias_data_dictionary.html";
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| 130 |
7931
|
aaronmk
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?>
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<table border="0" cellspacing="0" cellpadding="0">
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<tr valign="top">
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<td nowrap="nowrap"><h2>Terms</h2></td>
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<td nowrap="nowrap"><h2>Data</h2></td>
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</tr>
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<tr valign="top">
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<td nowrap="nowrap">
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<?php
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print("<blockquote>\n");
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print("<h3>Exchange schemas</h3>");
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| 141 |
7876
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aaronmk
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{
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print("<blockquote>\n");
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7939
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aaronmk
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add_ns("VegCore", ".term", "https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#");
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add_ns("DwC", ".term", "http://rs.tdwg.org/dwc/terms/#");
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| 145 |
7876
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aaronmk
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{
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| 146 |
7931
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aaronmk
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print("<blockquote>\n"); $h_level++;
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7939
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aaronmk
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add_ns("DwC-history", ".term", "http://rs.tdwg.org/dwc/terms/history/#");
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7931
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aaronmk
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print("</blockquote>\n"); $h_level--;
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| 149 |
7876
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aaronmk
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}
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| 150 |
7942
|
aaronmk
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add_ns("TCS", "#/XPath", "http://www.tdwg.org/standards/117/download/#/v101.xsd");
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add_ns("VegX", "#/XPath", "http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd");
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| 152 |
7931
|
aaronmk
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print("</blockquote>\n");
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| 153 |
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}
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print("<h3>Aggregators</h3>");
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{
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print("<blockquote>\n");
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| 157 |
7939
|
aaronmk
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add_ns("VegBank", ".table.column", custom_separator("http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&entity=dba_tabledescription&where=where_tablename&wparam=",
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| 158 |
7931
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aaronmk
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"#", "http://vegbank.org/get/index/dba_tabledescription"));
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| 159 |
7945
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aaronmk
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add_ns("SALVIAS", ".table.column", by_prefix($SALVIAS."#Plot_", $SALVIAS));
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| 160 |
7876
|
aaronmk
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{
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| 161 |
7931
|
aaronmk
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print("<blockquote>\n"); $h_level++;
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| 162 |
7939
|
aaronmk
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add_ns("SALVIAS-db", ".table.column", nimoy_db("salvias_plots"));
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| 163 |
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add_ns("SALVIAS-users", ".table.column", nimoy_db("salvias_users"));
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| 164 |
7931
|
aaronmk
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print("</blockquote>\n"); $h_level--;
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| 165 |
7876
|
aaronmk
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}
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| 166 |
7939
|
aaronmk
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add_ns("BIEN2", "", $nimoy."?target=server_databases.php");
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| 167 |
7876
|
aaronmk
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{
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| 168 |
7931
|
aaronmk
|
print("<blockquote>\n"); $h_level++;
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| 169 |
7939
|
aaronmk
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add_ns("BIEN2-web", ".table.column", nimoy_db("bien_web"));
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| 170 |
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add_ns("BIEN2-core", ".table.column", nimoy_db("bien2"));
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| 171 |
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add_ns("BIEN2-geoscrub", ".table.column", nimoy_db("geoscrub"));
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| 172 |
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add_ns("BIEN2-staging", ".table.column", nimoy_db("bien2_staging"));
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| 173 |
7931
|
aaronmk
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print("</blockquote>\n"); $h_level--;
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| 174 |
7876
|
aaronmk
|
}
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| 175 |
7939
|
aaronmk
|
add_ns("VegBIEN", ".table.column", phpPgAdmin("http://vegbiendev.nceas.ucsb.edu/phppgadmin/redirect.php?server=localhost%3A5432%3Aallow&database=vegbien&schema=public"));
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| 176 |
7931
|
aaronmk
|
print("</blockquote>\n");
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| 177 |
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}
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| 178 |
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print("<h3>Primary databases</h3>");
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| 179 |
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{
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| 180 |
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print("<blockquote>\n");
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| 181 |
7939
|
aaronmk
|
add_ns("TNRS", ".term", fragment_override("http://tnrs.iplantcollaborative.org/instructions.html", "download_results"));
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| 182 |
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add_ns("CTFS", "", $CTFS);
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| 183 |
7929
|
aaronmk
|
{
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| 184 |
7931
|
aaronmk
|
print("<blockquote>\n"); $h_level++;
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| 185 |
7939
|
aaronmk
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add_ns("CTFS-schema", ".table.column", "https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_archive/DBv5.txt#");
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| 186 |
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add_ns("CTFS-tables", ".table", fragment_override($Redmine."/wiki/CTFS", "Tables"));
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| 187 |
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add_ns("CTFS-terms", ".term", $Redmine_svn."/inputs/CTFS/_src/ctfs-comments_worksheet.xls#");
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| 188 |
7931
|
aaronmk
|
print("</blockquote>\n"); $h_level--;
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| 189 |
7929
|
aaronmk
|
}
|
| 190 |
7939
|
aaronmk
|
add_ns("IH-db", ".term", $IH_db);
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| 191 |
7876
|
aaronmk
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print("</blockquote>\n");
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| 192 |
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}
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| 193 |
7931
|
aaronmk
|
print("<h3>People</h3>");
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| 194 |
7876
|
aaronmk
|
{
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| 195 |
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print("<blockquote>\n");
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| 196 |
7939
|
aaronmk
|
add_ns("Brad-Boyle", "", $CTFS);
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| 197 |
7931
|
aaronmk
|
{
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| 198 |
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print("<blockquote>\n"); $h_level++;
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| 199 |
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$Brad_Boyle_VegCore = $Redmine_svn."/schemas/VegCore/Brad_Boyle";
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| 200 |
7939
|
aaronmk
|
add_ns("Brad-Boyle-data-provenance", ".term", $Brad_Boyle_VegCore."/BIEN%20database%20entities%20related%20to%20data%20provenance%20and%20ownership.docx#");
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| 201 |
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add_ns("Brad-Boyle-DwC-IDs-2013-2-7", ".term", $Brad_Boyle_VegCore."/vegbien_identifiers.xlsx#");
|
| 202 |
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add_ns("Brad-Boyle-DwC-IDs-2013-1-31", ".term", $Brad_Boyle_VegCore."/vegbien_identifier_examples.xlsx#");
|
| 203 |
7931
|
aaronmk
|
print("</blockquote>\n"); $h_level--;
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| 204 |
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}
|
| 205 |
7876
|
aaronmk
|
print("</blockquote>\n");
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| 206 |
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}
|
| 207 |
7931
|
aaronmk
|
print("</blockquote>\n");
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| 208 |
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?>
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| 209 |
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</td>
|
| 210 |
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<td nowrap="nowrap">
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| 211 |
|
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<?php
|
| 212 |
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print("<blockquote>\n");
|
| 213 |
7932
|
aaronmk
|
print("<h3>Institutions</h3>");
|
| 214 |
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{
|
| 215 |
|
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print("<blockquote>\n");
|
| 216 |
7939
|
aaronmk
|
add_ns("IH", ".herbarium_code", by_prefix("http://sweetgum.nybg.org/ih/herbarium_list.php?QueryName=DetailedQuery&Restriction=NamPartyType+%3D+%27IH+Herbarium%27&col_NamOrganisationAcronym=",
|
| 217 |
7931
|
aaronmk
|
"http://sweetgum.nybg.org/ih/"));
|
| 218 |
7932
|
aaronmk
|
print("</blockquote>\n");
|
| 219 |
|
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}
|
| 220 |
7931
|
aaronmk
|
print("</blockquote>\n");
|
| 221 |
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?>
|
| 222 |
|
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</td>
|
| 223 |
|
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</tr>
|
| 224 |
|
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</table>
|
| 225 |
|
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<?php
|
| 226 |
7922
|
aaronmk
|
if (ends_with($alias, '#')) # URL shortener requires fragment redirect
|
| 227 |
|
|
{
|
| 228 |
7876
|
aaronmk
|
?>
|
| 229 |
7931
|
aaronmk
|
<script type="text/javascript">
|
| 230 |
7876
|
aaronmk
|
var loc = document.location
|
| 231 |
7926
|
aaronmk
|
if (loc.hash) document.location = rm_prefix('#', loc.hash)
|
| 232 |
7931
|
aaronmk
|
</script>
|
| 233 |
7922
|
aaronmk
|
<?php
|
| 234 |
|
|
}
|
| 235 |
|
|
?>
|
| 236 |
7876
|
aaronmk
|
</body>
|
| 237 |
|
|
</html>
|
| 238 |
|
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<?php
|
| 239 |
|
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ob_end_flush();
|
| 240 |
|
|
?>
|
