Project

General

Profile

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1ha Plot Number,locationName,,
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1ha Plot X Coordinate,organismX_m,,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
6
1ha Plot Y Coordinate,organismY_m,,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
7
AccessCode,accessRights,"/_map:[1=private,2=""metadata only"",3=public]/value","3 plots contain 3 in this field and ""del"" in tmp_del"
8
Addcoll,recordedBy,/_join/2,
9
AgeClass,lifeStage,,
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Altitude,elevationInMeters,,Altitude Units is always m
11
Area,plotArea_ha,,
12
Area,plotArea_m2,,Area Units is always m
13
AuthorOfScientificName,scientificNameAuthorship,,
14
Available Phosphor,phosphorus_percent,,Assuming units are % based on the range of values
15
BarCode,OMIT,,"Omitted because this isn't specified on all rows, but SpecimenPK is"
16
Barcode,catalogNumber,,
17
CIC,cationExchangeCapacity_cmol_kg,,
18
CatalogNO,catalogNumber,,
19
CatalogNumberNumeric,catalogNumber,/_alt/1,
20
CatalogSeriesPrefix,institutionCode,/_alt/1,
21
CityLocality,verbatimLocality,/_alt/2,
22
Colldd,dayCollected,,
23
CollectionCD,collectionCode,,
24
CollectionDate,dateCollected,,
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CollectionDate,eventDate,,
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CollectionGUID,collectionID,,
27
CollectorAbbrev,recordedBy,/_first/3,
28
CollectorString,recordedBy,/_first/1/_merge/2,
29
CollectorStringShortened,recordedBy,/_first/2,
30
Collmm,monthCollected,,
31
Collyy,yearCollected,,
32
CoordinatePrecision,coordinateUncertaintyInMeters,,"Usage inconsistent with DwC definition, which only allows degrees. Assuming units based on the range and precision of values."
33
Country_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation
34
CurrentDet,scientificName,,
35
CurrentDetFamily,OMIT,,"Omitted because includes *family* author, which TNRS can’t handle"
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CurrentDetQualifier,identificationQualifier,,
37
CurrentDetRank,taxonRank,,
38
CurrentScientificName,taxonName,,
39
CurrentScientificNameWithAuthor,scientificName,,
40
Datum,verbatimCoordinates,/_join/1,
41
Description,fieldNotes,,
42
DetType,voucherType,,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
43
Detby,identifiedBy,,
44
Detyy,yearIdentified,,
45
Diameter at 1.3m,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
46
Diameter,diameterBreastHeight_cm,,
47
Diameter,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
48
Diameter,diameterBreastHeight_cm,,Units is always cm
49
Ecology,habitat,,
50
Electric conductivity,conductivity,,
51
Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
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Expedition Name,projectName,,
53
Expedition Number,projectID,,
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FROM ""REMIB"".""Specimen""
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FROM ""SALVIAS"".organisms
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FROM ""SALVIAS-CSV"".organisms
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FROM ""UNCC"".""Specimen""
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FieldFamilyFullName,family,,
59
FieldFamilyFullName,originalFamily,,
60
FieldFamilyHTML,OMIT,,"Omitted because includes *family* author, which TNRS can’t handle"
61
FieldNameAuthors,originalScientificNameAuthorship,,
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FieldNameFullName,originalTaxonName,,
63
FieldNameHTML,OMIT,,Adds HTML formatting to FieldNameFullName+FieldNameAuthors
64
GBIFFamilyOriginal,originalFamily,,
65
GBIFGenusOriginal,originalGenus,,
66
GROUP BY ""PLOT_ID"", subplot
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GROUP BY ""PlotID"", ""Line""
68
GROUP BY acronym, accession_number
69
GROUP BY herbarium, accession
70
Gazetteer,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/1",
71
GenBankNum,associatedSequences,"/_label[label=""GenBank""]/value",
72
GeorefMethod,georeferenceProtocol,,
73
HAVING count(*) > 1
74
HAVING count(DISTINCT census_date) > 1
75
HabitName,growthForm,,
76
IdentificationModifier,identificationQualifier,,
77
Identifier,tag,,
78
Ind,individualCode,,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
79
InstitutionCD,institutionCode,,
80
Institutions,institutionCode,,
81
Interchangable Calcium,calcium_percent,,Assuming units are % based on the range of values
82
Interchangeable Acidity,acidity_percent,,Assuming units are % based on the range of values
83
Interchangeable Magnesium,magnesium_percent,,Assuming units are % based on the range of values
84
Interchangeable Potassium,potassium_percent,,Assuming units are % based on the range of values
85
Interchangeable Sodium,sodium_percent,,Assuming units are % based on the range of values
86
Item ID,individualID,,
87
Item Obs ID,individualObservationID,,
88
LastDateModified,modified,,
89
Lat,decimalLatitude,,
90
LatDec,decimalLatitude,,
91
LatLongComments,georeferenceRemarks,,
92
LatestDateCollected,dateCollected,,
93
Latitude1,decimalLatitude,,
94
LatitudeDecDeg,decimalLatitude,,
95
Line,subplot,,
96
Loc_AltE,verbatimLongitude,,
97
Loc_AltN,verbatimLatitude,,
98
LocalityDescription,locality,,
99
Locality_Description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
100
Locnotes,verbatimLocality,/_join/2,
101
Long,decimalLongitude,,
102
LongDec,decimalLongitude,,
103
Longitude1,decimalLongitude,,
104
LongitudeDecDeg,decimalLongitude,,
105
LowerName,county,,
106
MajorGeo,continent,,
107
MaximumElevationInMeter,maximumElevationInMeters,,
108
MaximumElevationMeters,maximumElevationInMeters,,
109
MeasDay,dayCollected,,
110
MeasMon,monthCollected,,
111
MeasYear,yearCollected,,
112
MeasureID,individualID,,
113
Method,OMIT,,"Just contains ""Derived"", for 357 rows"
114
MethodCode,OMIT,,Not globally unique after lookup_MethodCode_Description is combined with PlotMethod
115
MinimumElevationInMeter,minimumElevationInMeters,,
116
MinimumElevationMeters,minimumElevationInMeters,,
117
MorphoSpeciesName,morphoname,,
118
Name,locationName,,
119
Names of Collectors,recordedBy,,
120
Newgazett,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/2",Only used in 1 row
121
NoInd,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
122
NoInd,stemCount,,
123
Note,plotNotes,,
124
Notes 2,plotNotes,,
125
Number,recordNumber,,
126
OBSERVATION_ID,eventID,,
127
OBSERVATION_ID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
128
Observation Date,eventDate,,
129
Organic Carbon,carbon_percent,,Assuming units are % based on the range of values
130
Organic material,organic_percent,,Assuming units are % based on the range of values
131
OrigFamily,originalFamily,,Brad: OMIT
132
OrigGenus,originalGenus,,
133
OrigSpecies,originalSpecificEpithet,,Brad: OMIT
134
OriginalCoordinateSystem,verbatimSRS,,
135
OriginalTaxonLabel,originalScientificName,,
136
OwnerInstitution,institutionCode,/_alt/2,
137
PARENT_ID,parentLocationID,,
138
PLT_CN,locationID,,
139
Phenology,reproductiveCondition,,
140
Physiography,landform,,
141
PlantFungusDescription,fieldNotes,"/_join/2/_label[label=""plant fungus""]/value",
142
Plot,locationName,,
143
PlotCD,locationID,,
144
PlotCode,locationName,,
145
PlotID_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation
146
PlotInventoryName,fieldNumber,,
147
PlotMethod,samplingProtocol,,
148
PlotObsID,individualID,,
149
PlotObsID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
150
PolDiv1,stateProvince,,Brad: No; pol1=stateProvince
151
Precip,precipitation,,
152
Precision,coordinateUncertaintyInMeters,,Units is always m
153
PrimOwnerID_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation
154
Project Abbreviation,projectName,,
155
RelatedCatalogedItems,relatedResourceID,/_alt/2,Used only when OtherCatalogNumbers is NULL
156
SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count
157
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count
158
SELECT acronym, accession_number, count(*)
159
SELECT count(*) FROM ""SpeciesLink"".specimens
160
SELECT herbarium, accession, count(*)
161
STEMCOUNT_ID,aggregateOccurrenceID,,
162
STEMLOCATION_ID,individualID,,
163
STEMLOCATION_ID,stemID,,
164
SciName,taxonName,,
165
ScientificNameOriginal,originalTaxonName,,
166
SeniorCollector,recordedBy,/_first/1/_merge/1,
167
Sequence,subplot,,
168
Site Name,projectName,,
169
SiteCode,locationName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
170
SizeOfSite,plotArea_ha,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
171
Slope,slopeAspect,,
172
Slope,slopeGradient,,
173
SourceVoucher,recordNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
174
Spatial Method,OMIT,,"Just contains ""Derived"", for 14927 rows"
175
Species Code,authorTaxonCode,/_alt/2,
176
SpeciesAuthority,scientificNameAuthorship,,
177
SpecimenID,catalogNumber,,
178
SpecimenPK,occurrenceID,,
179
Stop Date,projectEndDate,,
180
Subplot Number,subplot,,
181
Substrate,locality,"/_join/2/_label[label=""substrate""]/value",
182
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
183
Taxon Obs Note,taxonRemarks,,
184
Temp,temperature,,
185
Textural Class,texture,,
186
TimeCollected,eventTime,,
187
Topography,landform,,
188
Total Nitrogen,nitrogen_percent,,Assuming units are % based on the range of values
189
TotalHeight,height_m,,
190
Tree Number,tag,,
191
Tree,individualCode,,
192
TreeNotes,fieldNotes,,
193
TreeTag,tag,,
194
Trunk,authorStemCode,,
195
UniqueNYInternalRecordNumber,OMIT,,"Globally unique when provided, but omitted to avoid confusion since this is an internal-only ID"
196
UpperName,stateProvince,,
197
Vegetation Type,communityID,,
198
Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value",
199
Verbatim Code,authorTaxonCode,/_alt/1,
200
VerbatimCollectingDate,dateCollected,/_alt/0,
201
WHERE ""Line"" IS NOT NULL AND census_date IS NOT NULL
202
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
203
WHERE subplot IS NOT NULL AND census_date IS NOT NULL
204
XEast Long,verbatimCoordinates,"/_join/2/_label[label=""x""]/value",
205
YNorth Lat,verbatimCoordinates,"/_join/3/_label[label=""y""]/value",
206
[1] Using the following query:
207
accession,occurrenceID,,"Globally unique, although occasionally duplicated. [1]
208
accession_number,catalogNumber,,"Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
209
acronym,institutionCode,,
210
area,plotArea_m2,,"""Total area of the plot in m2"" (area definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename>)"
211
area|country|territory,country,,
212
auth,scientificNameAuthorship,,Brad: This is the author of the scientificName.
213
authors,scientificNameAuthorship,,
214
basal_diam,basalDiameter,,
215
campus,fieldNotes,"/_join/5/_label[label=""campus""]/value",
216
census_date,eventDate,,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
217
census_no,censusNumber,,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
218
cf,identificationQualifier,,
219
cf_aff,identificationQualifier,,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
220
cfaff,identificationQualifier,,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
221
coll_day,dayCollected,,
222
coll_firstname,recordedBy_givenName,,Brad: See comment above
223
coll_lastname,recordedBy_surName,,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
224
coll_month,monthCollected,,
225
coll_number,recordNumber,/_alt/1,Brad: Map instead as for voucher_string
226
coll_year,yearCollected,,
227
collday,dayCollected,,
228
collectionDate,dateCollected,,
229
collectiondate,dateCollected,,
230
collectno,recordNumber,,
231
collector1,recordedBy,/_join/2,
232
collector2,recordedBy,/_join/3,
233
collector3,recordedBy,/_join/4,
234
collmonth,monthCollected,,
235
collyear,yearCollected,,
236
comment1,fieldNotes,/_join/1,
237
comment2,fieldNotes,/_join/2,
238
comment3,fieldNotes,/_join/3,
239
comment4,fieldNotes,/_join/4,
240
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,,
241
conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,,
242
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,,
243
conceptual_darwin_2003_1_0_Class,class,,
244
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,,
245
conceptual_darwin_2003_1_0_Collector,recordedBy,,
246
conceptual_darwin_2003_1_0_CollectorNumber,recordNumber,/_alt/3,
247
conceptual_darwin_2003_1_0_ContinentOcean,continent,,
248
conceptual_darwin_2003_1_0_CoordinatePrecision,coordinatePrecision,,
249
conceptual_darwin_2003_1_0_Country,country,,
250
conceptual_darwin_2003_1_0_County,county,,
251
conceptual_darwin_2003_1_0_DateLastModified,modified,,
252
conceptual_darwin_2003_1_0_DayCollected,dayCollected,,
253
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,,
254
conceptual_darwin_2003_1_0_Family,family,,
255
conceptual_darwin_2003_1_0_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
256
conceptual_darwin_2003_1_0_Genus,genus,,
257
conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,,
258
conceptual_darwin_2003_1_0_IndividualCount,individualCount,,
259
conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,,
260
conceptual_darwin_2003_1_0_JulianDay,day,/_alt/1,
261
conceptual_darwin_2003_1_0_Kingdom,kingdom,,
262
conceptual_darwin_2003_1_0_Latitude,decimalLatitude,,
263
conceptual_darwin_2003_1_0_Locality,locality,,
264
conceptual_darwin_2003_1_0_Longitude,decimalLongitude,,
265
conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,,
266
conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,,
267
conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,,
268
conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,,
269
conceptual_darwin_2003_1_0_MonthCollected,monthCollected,,
270
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,,
271
conceptual_darwin_2003_1_0_Notes,fieldNotes,,
272
conceptual_darwin_2003_1_0_Order,order,,
273
conceptual_darwin_2003_1_0_Phylum,phylum,,
274
conceptual_darwin_2003_1_0_PreparationType,preparations,,
275
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,
276
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,
277
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,
278
conceptual_darwin_2003_1_0_ScientificName,taxonName,,
279
conceptual_darwin_2003_1_0_ScientificNameAuthor,scientificNameAuthorship,/_alt/2,
280
conceptual_darwin_2003_1_0_Sex,sex,,
281
conceptual_darwin_2003_1_0_Species,specificEpithet,,
282
conceptual_darwin_2003_1_0_StateProvince,stateProvince,,
283
conceptual_darwin_2003_1_0_Subspecies,subspecies,,
284
conceptual_darwin_2003_1_0_TimeOfDay,eventTime,,
285
conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,
286
conceptual_darwin_2003_1_0_YearCollected,yearCollected,,
287
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,,
288
confidentialityStatus,accessRights,"/_map:[./{0,1,2,3,4}=public,5=""data by request"",6=private]/value",Values defined at <http://vegbank.org/vegbank/views/dba_fielddescription_detail.jsp?view=detail&wparam=1581&entity=dba_fielddescription&params=1581>
289
confidentialityStatus,coordinateUncertaintyInMeters,"/_alt/1/_km_to_m/value/_map:[1=1,2=10,3=100,./{0,4,5,6}=]/value",Values defined at <http://vegbank.org/vegbank/views/dba_fielddescription_detail.jsp?view=detail&wparam=1581&entity=dba_fielddescription&params=1581>
290
confidentialitystatus,accessRights,"/_map:[./{0,1,2,3,4}=public,5=""data by request"",6=private]/value",Values defined at <http://vegbank.org/vegbank/views/dba_fielddescription_detail.jsp?view=detail&wparam=1581&entity=dba_fielddescription&params=1581>
291
confidentialitystatus,coordinateUncertaintyInMeters,"/_alt/1/_km_to_m/value/_map:[1=1,2=10,3=100,./{0,4,5,6}=]/value",Values defined at <http://vegbank.org/vegbank/views/dba_fielddescription_detail.jsp?view=detail&wparam=1581&entity=dba_fielddescription&params=1581>
292
convertednotes,fieldNotes,,
293
cover,coverPercent,,
294
darwin:BasisOfRecord,basisOfRecord,,
295
darwin:CatalogNumber,catalogNumber,,
296
darwin:Class,class,,
297
darwin:CollectionCode,collectionCode,,
298
darwin:Collector,recordedBy,,
299
darwin:CollectorNumber,recordNumber,,
300
darwin:ContinentOcean,continent,,
301
darwin:Country,country,,
302
darwin:County,county,,
303
darwin:DateLastModified,modified,,
304
darwin:DayCollected,dayCollected,,
305
darwin:DayIdentified,dayIdentified,,
306
darwin:Family,family,,
307
darwin:Genus,genus,,
308
darwin:IdentifiedBy,identifiedBy,,
309
darwin:IndividualCount,individualCount,,
310
darwin:InstitutionCode,institutionCode,,
311
darwin:JulianDay,day,,
312
darwin:Kingdom,kingdom,,
313
darwin:Latitude,decimalLatitude,,
314
darwin:Locality,locality,,
315
darwin:Longitude,decimalLongitude,,
316
darwin:MaximumDepth,maximumDepthInMeters,,
317
darwin:MaximumElevation,maximumElevationInMeters,,
318
darwin:MinimumDepth,minimumDepthInMeters,,
319
darwin:MinimumElevation,minimumElevationInMeters,,
320
darwin:MonthCollected,monthCollected,,
321
darwin:MonthIdentified,monthIdentified,,
322
darwin:Notes,fieldNotes,,
323
darwin:Order,order,,
324
darwin:Phylum,phylum,,
325
darwin:PreparationType,preparations,,
326
darwin:PreviousCatalogNumber,otherCatalogNumbers,,
327
darwin:RelatedCatalogItem,relatedResourceID,,
328
darwin:RelationshipType,relationshipOfResource,,
329
darwin:ScientificName,taxonName,,
330
darwin:ScientificNameAuthor,scientificNameAuthorship,,
331
darwin:Sex,sex,,
332
darwin:Species,specificEpithet,,
333
darwin:StateProvince,stateProvince,,
334
darwin:Subspecies,subspecies,,
335
darwin:TimeOfDay,eventTime,,
336
darwin:TypeStatus,typeStatus,,
337
darwin:YearCollected,yearCollected,,
338
darwin:YearIdentified,yearIdentified,,
339
date_finish,endDate,,
340
date_start,startDate,,
341
denorm_category,*category,/_alt/1,
342
denorm_division,*division,/_alt/1,
343
denorm_family,family,/_alt/1,
344
denorm_genus,genus,/_alt/1,
345
denorm_hybridX,*hybridX,/_alt/1,
346
denorm_kingdom,kingdom,/_alt/1,
347
denorm_quadAbbr,*quadAbbr,/_alt/1,
348
denorm_quadName,*quadName,/_alt/1,
349
denorm_species,specificEpithet,/_alt/1,
350
denorm_triAbbr,*triAbbr,/_alt/1,
351
denorm_triName,*triName,/_alt/1,
352
det_by,identifiedBy,,
353
det_type,voucherType,,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
354
dwc_curatorial_CollectorNumber,recordNumber,/_alt/3,
355
dwc_curatorial_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
356
dwc_curatorial_IdentifiedBy,identifiedBy,,
357
dwc_curatorial_IndividualCount,individualCount,,
358
dwc_curatorial_TypeStatus,typeStatus,,
359
dwc_dwcore_AuthorYearOfScientificName,scientificNameAuthorship,/_alt/3,
360
dwc_dwcore_BasisOfRecord,basisOfRecord,,
361
dwc_dwcore_CatalogNumber,catalogNumber,,
362
dwc_dwcore_Class,class,,
363
dwc_dwcore_CollectionCode,collectionCode,,
364
dwc_dwcore_Collector,recordedBy,,
365
dwc_dwcore_Continent,continent,,
366
dwc_dwcore_Country,country,,
367
dwc_dwcore_County,county,,
368
dwc_dwcore_DateLastModified,modified,,
369
dwc_dwcore_DayOfYear,day,/_alt/2,
370
dwc_dwcore_Family,family,,
371
dwc_dwcore_Genus,genus,,
372
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,,
373
dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,,
374
dwc_dwcore_InstitutionCode,institutionCode,,
375
dwc_dwcore_Kingdom,kingdom,,
376
dwc_dwcore_Locality,locality,,
377
dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,,
378
dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,,
379
dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,,
380
dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,,
381
dwc_dwcore_Order,order,,
382
dwc_dwcore_Phylum,phylum,,
383
dwc_dwcore_Remarks,taxonRemarks,,
384
dwc_dwcore_ScientificName,taxonName,,
385
dwc_dwcore_Sex,sex,,
386
dwc_dwcore_SpecificEpithet,specificEpithet,,
387
dwc_dwcore_StateProvince,stateProvince,,
388
dwc_geospatial_DecimalLatitude,decimalLatitude,,
389
dwc_geospatial_DecimalLongitude,decimalLongitude,,
390
dwc_geospatial_VerbatimLatitude,verbatimLatitude,,Contains a mix of DMS and other verbatim coordinates
391
dwc_geospatial_VerbatimLongitude,verbatimLongitude,,Contains a mix of DMS and other verbatim coordinates
392
dwc_terms_basisOfRecord,basisOfRecord,,
393
dwc_terms_catalogNumber,catalogNumber,,
394
dwc_terms_class,class,,
395
dwc_terms_collectionCode,collectionCode,,
396
dwc_terms_collectionID,collectionID,,
397
dwc_terms_continent,continent,,
398
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,
399
dwc_terms_country,country,,
400
dwc_terms_county,county,,
401
dwc_terms_dateIdentified,dateIdentified,,
402
dwc_terms_day,day,,
403
dwc_terms_decimalLatitude,decimalLatitude,,
404
dwc_terms_decimalLongitude,decimalLongitude,,
405
dwc_terms_endDayOfYear,endDayOfYear,,
406
dwc_terms_eventTime,eventTime,,
407
dwc_terms_family,family,,
408
dwc_terms_fieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
409
dwc_terms_genus,genus,,
410
dwc_terms_identifiedBy,identifiedBy,,
411
dwc_terms_individualCount,individualCount,,
412
dwc_terms_infraspecificEpithet,infraspecificEpithet,,
413
dwc_terms_institutionCode,institutionCode,,
414
dwc_terms_kingdom,kingdom,,
415
dwc_terms_locality,locality,,
416
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,,
417
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,,
418
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,,
419
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,,
420
dwc_terms_month,month,,
421
dwc_terms_occurrenceRemarks,occurrenceRemarks,,
422
dwc_terms_order,order,,
423
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,,
424
dwc_terms_phylum,phylum,,
425
dwc_terms_preparations,preparations,,
426
dwc_terms_recordNumber,recordNumber,/_alt/1,
427
dwc_terms_recordedBy,recordedBy,,
428
dwc_terms_scientificName,taxonName,,
429
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,/_alt/1,
430
dwc_terms_sex,sex,,
431
dwc_terms_specificEpithet,specificEpithet,,
432
dwc_terms_startDayOfYear,startDayOfYear,,
433
dwc_terms_stateProvince,stateProvince,,
434
dwc_terms_typeStatus,typeStatus,,
435
dwc_terms_verbatimLatitude,verbatimLatitude,,
436
dwc_terms_verbatimLongitude,verbatimLongitude,,
437
dwc_terms_year,year,,
438
elev_m,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
439
elev_max_m,maximumElevationInMeters,,
440
elev_min_m,minimumElevationInMeters,,
441
exchangeCapacity,cationExchangeCapacity_cmol_kg,,
442
exchangecapacity,cationExchangeCapacity_cmol_kg,,
443
fam_status,OMIT,,Brad: OMIT. This will be determined later by using TNRS.
444
firstCollectorName,recordedBy,,
445
firstCollectorRemarks,recordNumber,,"Actually the collector's number, not remarks"
446
flower,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
447
fruit,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
448
gen_status,OMIT,,Brad: OMIT. This will be determined later by using TNRS.
449
gentry_dbh,diameterBreastHeightGentry,,
450
givenName,recordedBy_givenName,,
451
givenname,recordedBy_givenName,,
452
herbarium,institutionCode,,
453
holdridge_life_zone,communityID,,
454
ht_first_branch_m,heightFirstBranch,,
455
http__purl_org_dc_terms_modified,modified,,
456
infra_ep_1,infraspecificEpithet,,
457
infra_rank_1,taxonRank,,
458
infraname,infraspecificEpithet,,
459
infrarank,taxonRank,/_alt/2,
460
inorout,fieldNotes,"/_join/7/_label[label=""in or out""]/value",
461
interpretationDate,dateIdentified,,
462
interpretationdate,dateIdentified,,
463
key,OMIT,,UniqueNYInternalRecordNumber is a better pkey
464
lat_decimal,decimalLatitude,,
465
lat_deg,decimalLatitude,,
466
lat_string,verbatimLatitude,,
467
leaves,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
468
life_zone,communityID,/_alt/3,
469
life_zone_code,communityID,/_alt/4,
470
life_zone_code,communityName,,
471
loanto,fieldNotes,"/_join/6/_label[label=""loaned to""]/value",
472
locality_description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
473
locationAccuracy,coordinateUncertaintyInMeters,/_alt/2,
474
locationaccuracy,coordinateUncertaintyInMeters,/_alt/2,
475
long_decimal,decimalLongitude,,
476
long_deg,decimalLongitude,,
477
long_string,verbatimLongitude,,
478
lookup_MethodCode_Description,observationMeasure,,
479
major_geo,continent,,
480
methodNarrative,samplingProtocol,,
481
methodnarrative,samplingProtocol,,
482
museumAccessionNumber,catalogNumber,,
483
museumaccessionnumber,catalogNumber,,
484
name_status,OMIT,,"Brad: OMIT. Except, note that if species_status=3, this indicate that name is a morphospecies and not a standard latin name. Not exactly sure how to use this in BIEN, but could be useful during the name-scrubbing process with TNRS."
485
no_of_individuals,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
486
obsEndDate,endDate,,
487
obsStartDate,startDate,,
488
obsenddate,endDate,,
489
observation_id,eventID,,
490
obsstartdate,startDate,,
491
orig_family,originalFamily,,Brad: OMIT
492
orig_species,originalSpecificEpithet,,Brad: OMIT
493
pH disolved,ph,,
494
parent_id,parentLocationID,,
495
plantNameWithAuthority,scientificName,,
496
plantname,taxonName,,
497
plot_administrator_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation
498
plot_code,locationName,,
499
plot_code,locationName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
500
plot_methodology,samplingProtocol,,
501
plotobs_id_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation
502
pol1,stateProvince,,Brad: No; pol1=stateProvince
503
pol2,county,,Brad: No pol2=countyParish
504
precip_mm,precipitation,,
505
project,projectName,,
506
project_id_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation
507
region|state|province,stateProvince,,
508
root,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
509
shape,footprintWKT,,
510
sheetno,associatedMedia,,?
511
soilClay,clay_percent,,
512
soilOrganic,organic_percent,,
513
soilPH,ph,,
514
soilSand,sand_percent,,
515
soilSilt,silt_percent,,
516
soilTexture,texture,,
517
soil_C,carbon_percent,,Assuming units are % based on the range of values
518
soil_Ca,calcium_percent,,Assuming units are % based on the range of values
519
soil_K,potassium_percent,,Assuming units are % based on the range of values
520
soil_Mg,magnesium_percent,,Assuming units are % based on the range of values
521
soil_N,nitrogen_percent,,Assuming units are % based on the range of values
522
soil_Na,sodium_percent,,Assuming units are % based on the range of values
523
soil_P,phosphorus_percent,"/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
524
soil_P,phosphorus_percent,"/_map:[""<1,5""=0,*=*]/value",Assuming units are % based on the range of values
525
soil_acidity,acidity_percent,"/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
526
soil_base,baseSaturation_percent,,Assuming units are % based on the range of values
527
soil_cation_cap,cationExchangeCapacity_cmol_kg,,
528
soil_conductivity,conductivity,,
529
soil_texture,texture,,
530
soilclay,clay_percent,,"""Percent clay in the soil horizon"" (soilClay definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)"
531
soilorganic,organic_percent,,"""Percent organic content of the soil"" (soilOrganic definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)"
532
soilph,ph,,
533
soilsand,sand_percent,,"""Percent sand in the soil horizon"" (soilSand definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)"
534
soilsilt,silt_percent,,"""Percent silt in the soil horizon"" (soilSilt definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=soilobs&entity=dba_tabledescription&where=where_tablename>)"
535
soiltexture,texture,,
536
specific_authority,scientificNameAuthorship,,Brad: This is the author of the scientificName.
537
stemDiameter,diameterBreastHeight_cm,,
538
stemHeight,height_m,,
539
stemLocation_ID,stemID,,
540
stemXPosition,organismX_m,,
541
stemYPosition,organismY_m,,
542
stem_canopy_form,canopyForm,,
543
stem_canopy_position,canopyPosition,,
544
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"
545
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for plotObservations.intercept_cm, which measures the same dimension"
546
stem_height_first_branch_m,heightFirstBranch,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
547
stem_height_m,height_m,,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare."
548
stem_height_m,height_m,/_alt/1,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare."
549
stem_liana_infestation,lianaInfestation,,
550
stem_tag1,tag,/_alt/1/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
551
stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
552
stem_tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
553
stem_tag2,tag,/_alt/1/_alt/1,The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: see above
554
stemcount_id,aggregateOccurrenceID,,
555
stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)"
556
stemheight,height_m,,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)"
557
stemlocation_id,individualID,,
558
stemlocation_id,stemID,,
559
stemxposition,organismX_m,,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)"
560
stemyposition,organismY_m,,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)"
561
surName,recordedBy_surName,,
562
surname,recordedBy_surName,,
563
tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
564
tag1,tag,/_alt/2/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
565
tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
566
tag2,tag,/_alt/2/_alt/1,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
567
taxonImportance_ID,OMIT,,Omitted because STEMCOUNT_ID is more specific
568
taxonLevel,taxonRank,,
569
taxonimportance_id,OMIT,,Omitted because stemcount_id is more specific
570
temp_c,temperature,,
571
temp_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"
572
tmp_PlotObsID_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation
573
tmp_del_index,OMIT,,Placeholder column created by MySQL to PostgreSQL translation
574
topography_desc,landform,,
575
usdaRank,taxonRank,/_alt/1,
576
vegetation_1,communityID,/_alt/2,Second because less detailed than vegetation_2
577
vegetation_2,communityID,/_alt/1,
578
voucher_string,recordNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
579
x,organismX_m,,"Assuming units based on the size of values relative to plot area, which has units of ha. Not documented in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>."
580
x_position,organismX_m,,"""x coordinate in meters"" (x_position definition at <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: These are important, fundamental values of many tree plots"
581
y,organismY_m,,"Assuming units based on the size of values relative to plot area, which has units of ha. Not documented in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>."
582
y_position,organismY_m,,"""y coordinate in meters"" (y_position definition at <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: See comment above for x_position"
(5-5/6)