Project

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Profile

1 762 aaronmk
NYBG:nybg_raw,VegBIEN:/specimenreplicate,Comments,Order
2
CoordinatePrecision,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationaccuracy,,89
3
Country,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=""area|country|territory""])/placename",Brad: Required; reject record if this field NULL,63
4
StateProvince,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=""region|state|province""])/placename",,65
5
County,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace(/*_id/namedplace[placesystem=county])/placename,,66
6
Locality,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/locationplace/*_id/namedplace/placedescription,"or locality?; Brad: Correct for VB; Nick, is there no specific element for locality description in VegX? Definitely need one.",69
7
Latitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallatitude,or decimalLatitude?,81
8
Longitude,/*_id/taxonoccurrence/*_id/locationevent/*_id/location/reallongitude,or decimalLongitude?,82
9
MaximumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",,72
10
MinimumElevation,"/*_id/taxonoccurrence/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",,71
11 798 aaronmk
DayCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/day,,44
12
MonthCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/month,,44
13
YearCollected,/*_id/taxonoccurrence/*_id/locationevent/obsstartdate/_alt/2/_date/year,,44
14 762 aaronmk
MaximumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/max,,75
15
MinimumDepth,/*_id/taxonoccurrence/*_id/locationevent/waterdepth/min,,74
16
Habitat,"/*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=habitat]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?",52
17
PlantFungusDescription,"/*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation/definedvalue[*_id/userdefined[tablename=stemobservation,userdefinedname=plantFungusDescription]]:[@fkey=tableRecord_ID]/definedvalue",,
18
Sex,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections",26
19 798 aaronmk
IdentifiedDate,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/1/_*/date",,120
20
DayIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/day",,120
21
MonthIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/month",,120
22
YearIdentified,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_alt/2/_date/year",,120
23 762 aaronmk
IdentifiedBy,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?,119
24
Notes,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes",54
25
ScientificName,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?",134
26
ScientificNameAuthor,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author",153
27
Class,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,144
28
Family,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,146
29
Genus,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,147
30
Kingdom,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,142
31
Order,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,145
32
Species,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,149
33
Phylum,"/*_id/taxonoccurrence/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",,143
34
UniqueNYInternalRecordNumber,"/{:[*_id/reference]/sourceaccessioncode,*_id/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/authorplantcode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key",19
35
FieldNumber,:[*_id/reference]/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?",53
36
CollectorNumber,:[*_id/reference]/collectornumber_dwc,"?; Brad: OMIT; db-specific element, not relevant to VB/VX",24
37
Collector,:[*_id/reference]/verbatimcollectorname,?; Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?,94
38
InstitutionCode,:[*_id/reference]/{museum_id/party/organizationname/_name/first},,11
39
CollectionCode,":[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name,12
40
BasisOfRecord,,Brad: OMIT? See http://rs.tdwg.org/dwc/terms/index.htm#basisOfRecord for definition of this term.,15
41
BoundingBox,,
42
CatalogNumber,,"Brad: Not sure if mapping correct. Nick, is there an element for institutional accession codes in VegX?; Aaron: This can't be used as the accession code (primary key) because some rows don't have a value for it",20
43 798 aaronmk
CollectedDate,,** No join mapping for eventDate/_alt/1 **
44 762 aaronmk
ContinentOcean,,Brad: OMIT,59
45
DateLastModified,,"Brad: Mapping to VegX is incorrect. I think is this merely an internal timestamp indicated when record last modified, not necessarily when determination (taxon name) last modified. Probably we should omit this field, although might be useful for updating changed records from this source.",1
46
IndividualCount,,Brad: OMIT; not relevant for DwC plant specimen data.,25
47
JulianDay,,Brad: OMIT,50
48
PreparationType,,Brad: OMIT,32
49
PreviousCatalogNumber,,?; Brad: OMIT,35
50
RelatedCatalogItem,,Brad: OMIT,161
51
RelationshipType,,Brad: OMIT,162
52
Subspecies,,
53
Substrate,,
54
TimeOfDay,,Brad: OMIT,45
55
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN,125
56
Vegetation,,
57
key,,