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Revision 8176

inputs/input.Makefile: %/.map.csv.last_cleanup: Run fix_line_endings after canon/translate to standardize Python's \r\n line endings back to \n. This prevents issues with mixed line endings because LibreOffice (and probably Excel) treat all cell-internal line endings as \n but row line endings as whatever the file had, while text editors like jEdit translate all line endings to whatever the autodetected line ending is. (This creates spurious line ending diffs when a map spreadsheet containing multiline cells is edited in a text editor.)

View differences:

inputs/TEX/Specimen2/map.csv
1
TEX,VegCore,Filter,Comments
2
HERBARIUM,collection,,
3
BARCODE,barcode,,
4
FAMILY,family,,
5
GENUS,genus,,
6
SPECIES,specificEpithet,,
7
SPECIES AUTHORITY,scientificNameAuthorship,,
8
SUBSPECIES,subspecies,,
9
SUBSPECIES AUTHOR,*SUBSPECIES AUTHOR,,
10
VARIETY,variety,,
11
VARIETY AUTHOR,*VARIETY AUTHOR,,
12
STATE,stateProvince,,
13
COUNTY,county,,
14
LOCALITY,locality,,
15
VEGETATION,habitat,,
16
PLANT DATA,occurrenceRemarks,/_join/1,
17
ELEVATION,verbatimElevation,,
18
LATITUDE,latitude_DMS,,
19
LONGITUDE,longitude_DMS,,
20
EXACT DATE,dateCollected,/_alt/1,
21
END DATE,UNUSED,,
22
GENERAL DATE,dateCollected,/_alt/2,
23
COLLECTOR 1 FIRST NAME,recordedBy,/_join/1/_join_words/1,
24
COLLECTOR 1 LAST NAME,recordedBy,/_join/1/_join_words/2,
25
COLLECTOR NUMBER,collectorNumber,,
26
COLLECTOR 2 FIRST NAME,recordedBy,/_join/2/_join_words/1,
27
COLLECTOR 2 LAST NAME,recordedBy,/_join/2/_join_words/2,
28
COLLECTOR 3 FIRST NAME,recordedBy,/_join/3/_join_words/1,
29
COLLECTOR 3 LAST NAME,recordedBy,/_join/3/_join_words/2,
30
COLLECTOR 4 FIRST NAME,recordedBy,/_join/4/_join_words/1,
31
COLLECTOR 4 LAST NAME,recordedBy,/_join/4/_join_words/2,
32
COLLECTOR 5 FIRST NAME,recordedBy,/_join/5/_join_words/1,
33
COLLECTOR 5 LAST NAME,recordedBy,/_join/5/_join_words/2,
34
LATLONG SOURCE,*LATLONG SOURCE,,
35
LATLONG DATUM,*LATLONG DATUM,,
36
DATABASED BY,*DATABASED BY,,
37
MISC NOTES,occurrenceRemarks,/_join/2,
38
UTM,*UTM,,
39
ORIGIN,establishmentMeans,,
40
PHENOLOGY,reproductiveCondition,,
41
DETERMINER FIRST NAME,identifiedBy,,
42
DETERMINER LAST NAME,identifiedBy,,
43
DET DATE,dateIdentified,,
44
DETERMINER INSTITUTION,*DETERMINER INSTITUTION,,
45
DET NOTES,identificationRemarks,,
1
TEX,VegCore,Filter,Comments
2
HERBARIUM,collection,,
3
BARCODE,barcode,,
4
FAMILY,family,,
5
GENUS,genus,,
6
SPECIES,specificEpithet,,
7
SPECIES AUTHORITY,scientificNameAuthorship,,
8
SUBSPECIES,subspecies,,
9
SUBSPECIES AUTHOR,*SUBSPECIES AUTHOR,,
10
VARIETY,variety,,
11
VARIETY AUTHOR,*VARIETY AUTHOR,,
12
STATE,stateProvince,,
13
COUNTY,county,,
14
LOCALITY,locality,,
15
VEGETATION,habitat,,
16
PLANT DATA,occurrenceRemarks,/_join/1,
17
ELEVATION,verbatimElevation,,
18
LATITUDE,latitude_DMS,,
19
LONGITUDE,longitude_DMS,,
20
EXACT DATE,dateCollected,/_alt/1,
21
END DATE,UNUSED,,
22
GENERAL DATE,dateCollected,/_alt/2,
23
COLLECTOR 1 FIRST NAME,recordedBy,/_join/1/_join_words/1,
24
COLLECTOR 1 LAST NAME,recordedBy,/_join/1/_join_words/2,
25
COLLECTOR NUMBER,collectorNumber,,
26
COLLECTOR 2 FIRST NAME,recordedBy,/_join/2/_join_words/1,
27
COLLECTOR 2 LAST NAME,recordedBy,/_join/2/_join_words/2,
28
COLLECTOR 3 FIRST NAME,recordedBy,/_join/3/_join_words/1,
29
COLLECTOR 3 LAST NAME,recordedBy,/_join/3/_join_words/2,
30
COLLECTOR 4 FIRST NAME,recordedBy,/_join/4/_join_words/1,
31
COLLECTOR 4 LAST NAME,recordedBy,/_join/4/_join_words/2,
32
COLLECTOR 5 FIRST NAME,recordedBy,/_join/5/_join_words/1,
33
COLLECTOR 5 LAST NAME,recordedBy,/_join/5/_join_words/2,
34
LATLONG SOURCE,*LATLONG SOURCE,,
35
LATLONG DATUM,*LATLONG DATUM,,
36
DATABASED BY,*DATABASED BY,,
37
MISC NOTES,occurrenceRemarks,/_join/2,
38
UTM,*UTM,,
39
ORIGIN,establishmentMeans,,
40
PHENOLOGY,reproductiveCondition,,
41
DETERMINER FIRST NAME,identifiedBy,,
42
DETERMINER LAST NAME,identifiedBy,,
43
DET DATE,dateIdentified,,
44
DETERMINER INSTITUTION,*DETERMINER INSTITUTION,,
45
DET NOTES,identificationRemarks,,
inputs/newWorld/Source/map.csv
1
newWorld,VegCore,Filter,Comments
2
:primary database,sourceType,,
1
newWorld,VegCore,Filter,Comments
2
:primary database,sourceType,,
inputs/SALVIAS/Source/map.csv
1
SALVIAS,VegCore,Filter,Comments
2
:aggregator,sourceType,,
3
:plot,observationGranularity,,
1
SALVIAS,VegCore,Filter,Comments
2
:aggregator,sourceType,,
3
:plot,observationGranularity,,
inputs/CTFS/Subplot/map.csv
1
CTFS,VegCore,Filter,Comments
2
QuadratID,subplot,,Not globally unique; unique only within Site
3
PlotID,locationID,,
4
QuadratName,OMIT,,QuadratID is used for the same purpose
5
StartX,subplotX,,
6
StartY,subplotY,,
7
DimX,*DimX,,
8
DimY,*DimY,,
1
CTFS,VegCore,Filter,Comments
2
QuadratID,subplot,,Not globally unique; unique only within Site
3
PlotID,locationID,,
4
QuadratName,OMIT,,QuadratID is used for the same purpose
5
StartX,subplotX,,
6
StartY,subplotY,,
7
DimX,*DimX,,
8
DimY,*DimY,,
inputs/CTFS/Source/map.csv
1
CTFS,VegCore,Filter,Comments
2
:primary database,sourceType,,
3
:plot,observationGranularity,,
1
CTFS,VegCore,Filter,Comments
2
:primary database,sourceType,,
3
:plot,observationGranularity,,
inputs/CTFS/AggregateObservation/map.csv
1
CTFS,VegCore,Filter,Comments
2
DWstagingID,occurrenceID,,
3
Country,country,,
4
Province,stateProvince,,
5
Plot,locationName,,
6
CensusName,authorEventCode,,
7
Latitude ,decimalLatitude,,
8
Longitude ,decimalLongitude,,
9
Elevation ,elevationInMeters,,Assuming units based on the range and precision of values
10
Genus ,genus,,
11
speciesname,specificEpithet,,
12
subspecies,subspecies,,
13
StartDate,startDate,,
14
EndDate,endDate,,
15
MeanDate,*MeanDate,,
16
Abund,individualCount,,
17
VegCategory,growthForm,,
18
maxDBHcm,diameterBreastHeight_cm,/_avg/1,
19
minDBHcm,diameterBreastHeight_cm,/_avg/2,
20
PlotSize,plotArea_ha,,Assuming units based on the range and precision of values compared to the PlotShape values
21
PlotShape,footprintWKT,,
1
CTFS,VegCore,Filter,Comments
2
DWstagingID,occurrenceID,,
3
Country,country,,
4
Province,stateProvince,,
5
Plot,locationName,,
6
CensusName,authorEventCode,,
7
Latitude ,decimalLatitude,,
8
Longitude ,decimalLongitude,,
9
Elevation ,elevationInMeters,,Assuming units based on the range and precision of values
10
Genus ,genus,,
11
speciesname,specificEpithet,,
12
subspecies,subspecies,,
13
StartDate,startDate,,
14
EndDate,endDate,,
15
MeanDate,*MeanDate,,
16
Abund,individualCount,,
17
VegCategory,growthForm,,
18
maxDBHcm,diameterBreastHeight_cm,/_avg/1,
19
minDBHcm,diameterBreastHeight_cm,/_avg/2,
20
PlotSize,plotArea_ha,,Assuming units based on the range and precision of values compared to the PlotShape values
21
PlotShape,footprintWKT,,
inputs/CTFS/Plot/map.csv
1
CTFS,VegCore,Filter,Comments

2
CountryID,*CountryID,,

3
PlotID,locationID,,

4
PlotName,locationName,,

5
LocationName,locality,,

6
Latitude,decimalLatitude,,

7
Longitude,decimalLongitude,,

1
CTFS,VegCore,Filter,Comments
2
CountryID,*CountryID,,
3
PlotID,locationID,,
4
PlotName,locationName,,
5
LocationName,locality,,
6
Latitude,decimalLatitude,,
7
Longitude,decimalLongitude,,
8 8
Elevation,elevationInMeters,,"Assuming units are m based on the range of values [1] and the country the data is from (Panama). Not documented in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>.
9 9

  
10 10
[1] Using the following query:
......
13 13
FROM ""CTFS"".""Plot""
14 14
GROUP BY ""Elevation""::real , ""LocationName""
15 15
ORDER BY ""Elevation""::real DESC
16
-----"
17
ReferenceX,*ReferenceX,,Rarely used
18
ReferenceY,*ReferenceY,,Rarely used
19
SizeOfSite,plotArea_ha,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
20
ShapeOfSite,footprintWKT,,
21
DescriptionOfSite,locality,,
22
CountryName,country,,
16
-----"
17
ReferenceX,*ReferenceX,,Rarely used
18
ReferenceY,*ReferenceY,,Rarely used
19
SizeOfSite,plotArea_ha,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
20
ShapeOfSite,footprintWKT,,
21
DescriptionOfSite,locality,,
22
CountryName,country,,
inputs/TEX/Specimen/map.csv
1
TEX,VegCore,Filter,Comments
2
HERBARIUM,collection,,
3
ACCESSION NO.,accessionNumber,,
4
COLLECTOR NAME(S),recordedBy,,
5
COLLECTOR NUMBER,collectorNumber,,
6
COLL. DATE (EXACT),dateCollected,/_alt/1,
7
COLL. DATE (GENERAL),dateCollected,/_alt/2,
8
ORIGIN,establishmentMeans,,
9
PHENOLOGY,reproductiveCondition,,
10
FAMILY,family,,
11
GENUS,genus,,
12
SPECIES,specificEpithet,,
13
AUTHORITY,scientificNameAuthorship,,
14
INFRA RANK,infraspecificRank,,
15
INFRA NAME,infraspecificEpithet,,
16
INFRA AUTHORITY,*INFRA AUTHORITY,,
17
DETERMINED BY,identifiedBy,,
18
LAT DEGREES,latitude_deg,,
19
LAT MINUTES,latitude_min,,
20
LAT SECONDS,latitude_sec,,
21
LAT NS,*LAT NS,,
22
LONG DEGREES,longitude_deg,,
23
LONG MINUTES,longitude_min,,
24
LONG SECONDS,longitude_sec,,
25
LONG EW,*LONG EW,,
26
SOURCE OF LATLONG,*SOURCE OF LATLONG,,
27
STATE,stateProvince,,
28
COUNTY,county,,
29
LOCATION,locality,,
30
ELEVATION,verbatimElevation,,
31
ECOLOGICAL INFORMATION,habitat,,
32
UTM,*UTM,,
33
SPECIMEN NOTES,occurrenceRemarks,,
34
DET NOTES,identificationRemarks,,
35
DATA ENTRY BY,*DATA ENTRY BY,,
36
DATA ENTRY DATE,*DATA ENTRY DATE,,
37
DATA EDITED DATE,modified,,
1
TEX,VegCore,Filter,Comments
2
HERBARIUM,collection,,
3
ACCESSION NO.,accessionNumber,,
4
COLLECTOR NAME(S),recordedBy,,
5
COLLECTOR NUMBER,collectorNumber,,
6
COLL. DATE (EXACT),dateCollected,/_alt/1,
7
COLL. DATE (GENERAL),dateCollected,/_alt/2,
8
ORIGIN,establishmentMeans,,
9
PHENOLOGY,reproductiveCondition,,
10
FAMILY,family,,
11
GENUS,genus,,
12
SPECIES,specificEpithet,,
13
AUTHORITY,scientificNameAuthorship,,
14
INFRA RANK,infraspecificRank,,
15
INFRA NAME,infraspecificEpithet,,
16
INFRA AUTHORITY,*INFRA AUTHORITY,,
17
DETERMINED BY,identifiedBy,,
18
LAT DEGREES,latitude_deg,,
19
LAT MINUTES,latitude_min,,
20
LAT SECONDS,latitude_sec,,
21
LAT NS,*LAT NS,,
22
LONG DEGREES,longitude_deg,,
23
LONG MINUTES,longitude_min,,
24
LONG SECONDS,longitude_sec,,
25
LONG EW,*LONG EW,,
26
SOURCE OF LATLONG,*SOURCE OF LATLONG,,
27
STATE,stateProvince,,
28
COUNTY,county,,
29
LOCATION,locality,,
30
ELEVATION,verbatimElevation,,
31
ECOLOGICAL INFORMATION,habitat,,
32
UTM,*UTM,,
33
SPECIMEN NOTES,occurrenceRemarks,,
34
DET NOTES,identificationRemarks,,
35
DATA ENTRY BY,*DATA ENTRY BY,,
36
DATA ENTRY DATE,*DATA ENTRY DATE,,
37
DATA EDITED DATE,modified,,
inputs/BRIT/specimen_flat/map.csv
1
BRIT,VegCore,Filter,Comments
2
specimen_id,dataProviderRecordID,,
3
Institution_Code,specimenHolderInstitutions,,
4
Global_Unique_Identifier,UNUSED,,
5
Collector_Abbrev_Name,recordedBy,/_join/1,
6
Collection_Team,recordedBy,/_join/2,
7
Collection_Number,collectorNumber,,
8
Date_of_Collection,dateCollected,,
9
Year_Collected,yearCollected,,
10
Month_Collected,monthCollected,,
11
Day_Collected,dayCollected,,
12
Catalog_Number,accessionNumber,,
13
Scientific_Name,scientificName,,
14
Kingdom_Name,kingdom,,
15
Division_Name,phylum,,
16
Class_Name,class,,
17
Subclass_Name,*subclass,,
18
Order_Name,order,,
19
Family_Name,family,,
20
Genus_Name,genus,,
21
Specific_Epithet,specificEpithet,,
22
Sp_Authority,scientificNameAuthorship,,
23
Infra_Rank,infraspecificRank,,
24
Infra_Epithet,infraspecificEpithet,,
25
Local_Name,vernacularName,,
26
Continent_Name,continent,,
27
Country_Name,country,,
28
Region_Name,stateProvince,,
29
Subregion_Name,county,,
30
Closest_Town,UNUSED,,
31
Research_Site_Name,*Research_Site_Name,,
32
Project_Name,projectName,,
33
Locality_Summary,locality,/_join/1,
34
Locality_Description,locality,/_join/2,
35
Locality_Description,occurrenceRemarks,"/_if[@name=""if has Locality_Description""]/cond",
36
Locality_Site_Specific,locality,/_join/3,
37
Habitat_Description,habitat,/_join/1,
38
Habitat_Summary,habitat,/_join/2,
39
Soil_Description,*Soil_Description,,
40
Notes_Plant,occurrenceRemarks,"/_if[@name=""if has Locality_Description""]/then",
41
Phenology_Stage,reproductiveCondition,,
42
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values
43
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values
44
DBH_Min,diameterBreastHeight_cm,/_avg/1,Assuming units based on the range and precision of values
45
DBH_Max,diameterBreastHeight_cm,/_avg/2,Assuming units based on the range and precision of values
46
Latitude,decimalLatitude,,
47
Longitude,decimalLongitude,,
48
Coordinate_Uncertainity,coordinateUncertaintyInMeters,,Assuming units based on the range and precision of values
49
Elevation_Min,minimumElevationInMeters,,Assuming units based on the range and precision of values
50
Elevation_Max,maximumElevationInMeters,,Assuming units based on the range and precision of values
51
Basis_Of_Specimen,basisOfRecord,,
52
Auxilirary_Collections,UNUSED,,
53
Collection_Method,samplingProtocol,,
54
Dubpliate_Herbarium,UNUSED,,
55
Duplicates,*Duplicates,,# of duplicates
56
Type_Specimen,UNUSED,,
57
Updated_date,modified,,
58
Determined_By_Name,identifiedBy,,
59
Determined_By_Date,dateIdentified,,
60
Year_Identified,yearIdentified,,
61
Month_Identified,monthIdentified,,
62
Day_Identified,dayIdentified,,
1
BRIT,VegCore,Filter,Comments
2
specimen_id,dataProviderRecordID,,
3
Institution_Code,specimenHolderInstitutions,,
4
Global_Unique_Identifier,UNUSED,,
5
Collector_Abbrev_Name,recordedBy,/_join/1,
6
Collection_Team,recordedBy,/_join/2,
7
Collection_Number,collectorNumber,,
8
Date_of_Collection,dateCollected,,
9
Year_Collected,yearCollected,,
10
Month_Collected,monthCollected,,
11
Day_Collected,dayCollected,,
12
Catalog_Number,accessionNumber,,
13
Scientific_Name,scientificName,,
14
Kingdom_Name,kingdom,,
15
Division_Name,phylum,,
16
Class_Name,class,,
17
Subclass_Name,*subclass,,
18
Order_Name,order,,
19
Family_Name,family,,
20
Genus_Name,genus,,
21
Specific_Epithet,specificEpithet,,
22
Sp_Authority,scientificNameAuthorship,,
23
Infra_Rank,infraspecificRank,,
24
Infra_Epithet,infraspecificEpithet,,
25
Local_Name,vernacularName,,
26
Continent_Name,continent,,
27
Country_Name,country,,
28
Region_Name,stateProvince,,
29
Subregion_Name,county,,
30
Closest_Town,UNUSED,,
31
Research_Site_Name,*Research_Site_Name,,
32
Project_Name,projectName,,
33
Locality_Summary,locality,/_join/1,
34
Locality_Description,locality,/_join/2,
35
Locality_Description,occurrenceRemarks,"/_if[@name=""if has Locality_Description""]/cond",
36
Locality_Site_Specific,locality,/_join/3,
37
Habitat_Description,habitat,/_join/1,
38
Habitat_Summary,habitat,/_join/2,
39
Soil_Description,*Soil_Description,,
40
Notes_Plant,occurrenceRemarks,"/_if[@name=""if has Locality_Description""]/then",
41
Phenology_Stage,reproductiveCondition,,
42
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values
43
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values
44
DBH_Min,diameterBreastHeight_cm,/_avg/1,Assuming units based on the range and precision of values
45
DBH_Max,diameterBreastHeight_cm,/_avg/2,Assuming units based on the range and precision of values
46
Latitude,decimalLatitude,,
47
Longitude,decimalLongitude,,
48
Coordinate_Uncertainity,coordinateUncertaintyInMeters,,Assuming units based on the range and precision of values
49
Elevation_Min,minimumElevationInMeters,,Assuming units based on the range and precision of values
50
Elevation_Max,maximumElevationInMeters,,Assuming units based on the range and precision of values
51
Basis_Of_Specimen,basisOfRecord,,
52
Auxilirary_Collections,UNUSED,,
53
Collection_Method,samplingProtocol,,
54
Dubpliate_Herbarium,UNUSED,,
55
Duplicates,*Duplicates,,# of duplicates
56
Type_Specimen,UNUSED,,
57
Updated_date,modified,,
58
Determined_By_Name,identifiedBy,,
59
Determined_By_Date,dateIdentified,,
60
Year_Identified,yearIdentified,,
61
Month_Identified,monthIdentified,,
62
Day_Identified,dayIdentified,,
inputs/SALVIAS/stems/map.csv
1
SALVIAS,VegCore,Filter,Comments
2
stem_id,stemID,,
3
origrecord_id_stems,*origrecord_id_stems,,
4
plotobs_id,individualID,,
5
NoInd,stemCount,,
6
basal_diam,basalDiameter_cm,,Assuming units are the same as for stem_dbh because the values are similar and they measure the same dimension
7
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for plotObservations.intercept_cm, which measures the same dimension"
8
gentry_dbh,diameterBreastHeightGentry_cm,,Assuming units are the same as for stem_dbh because the values are similar and they measure the same dimension
9
stem_notes,stemNotes,,
10
stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11
stem_tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12
stem_height_m,height_m,,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare."
13
stem_height_first_branch_m,heightFirstBranch_m,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
14
stem_canopy_form,canopyForm,,
15
stem_canopy_position,canopyPosition,,
16
stem_liana_infestation,lianaInfestation,,
17
tmp_del,*tmp_del,,
1
SALVIAS,VegCore,Filter,Comments
2
stem_id,stemID,,
3
origrecord_id_stems,*origrecord_id_stems,,
4
plotobs_id,individualID,,
5
NoInd,stemCount,,
6
basal_diam,basalDiameter_cm,,Assuming units are the same as for stem_dbh because the values are similar and they measure the same dimension
7
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for plotObservations.intercept_cm, which measures the same dimension"
8
gentry_dbh,diameterBreastHeightGentry_cm,,Assuming units are the same as for stem_dbh because the values are similar and they measure the same dimension
9
stem_notes,stemNotes,,
10
stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
11
stem_tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
12
stem_height_m,height_m,,"""Total height of this stem only, in meters"" (stem_height_m definition at < http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data>). Brad: Same as for height, but applies to individuals stems, not trees. Rare."
13
stem_height_first_branch_m,heightFirstBranch_m,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
14
stem_canopy_form,canopyForm,,
15
stem_canopy_position,canopyPosition,,
16
stem_liana_infestation,lianaInfestation,,
17
tmp_del,*tmp_del,,
inputs/SALVIAS/plotMetadata_/map.csv
1
SALVIAS,VegCore,Filter,Comments
2
MethodCode,OMIT,,Not globally unique after lookup_MethodCode_Description is combined with PlotMethod
3
PlotID,locationID,,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4
orig_filename,*orig_filename,,
5
AccessCode,accessRights,"/_map:[1=private,2=""metadata only"",3=public]/value","3 plots contain 3 in this field and ""del"" in tmp_del"
6
project_id,projectID,,
7
PrimOwnerID,*PrimOwnerID,,
8
SiteCode,locationName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
9
SiteName,*SiteName,,
10
new_world,*new_world,,
11
MajorGeo,continent,,
12
Country,country,,
13
PolDiv1,stateProvince,,Brad: No; pol1=stateProvince
14
pol1_type,*pol1_type,,
15
pol2,county,,Brad: No pol2=countyParish
16
pol2_type,*pol2_type,,
17
lat_string,verbatimLatitude,,
18
long_string,verbatimLongitude,,
19
LatDec,decimalLatitude,,
20
LongDec,decimalLongitude,,
21
lat_long_accuracy,*lat_long_accuracy,,"Plain text description of accuracy, not numeric"
22
Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
23
elev_max_m,maximumElevationInMeters,,
24
elev_min_m,minimumElevationInMeters,,
25
Precip,precipitation_mm,,
26
ElevSource,*ElevSource,,
27
Temp,temperature_C,,
28
PrecipSource,*PrecipSource,,
29
TempSource,*TempSource,,
30
bearing,*bearing,,
31
slope_aspect,slopeAspect,,
32
slope_gradient,slopeGradient,,
33
clay_percent,clay_percent,,
34
silt_percent,silt_percent,,
35
sand_percent,sand_percent,,
36
pH,ph,,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
37
soil_N,nitrogen_percent,,Assuming units are % based on the range of values
38
soil_P,phosphorus_percent,"/_map:[""<1,5""=0,*=*]/value",Assuming units are % based on the range of values
39
soil_C,carbon_percent,,Assuming units are % based on the range of values
40
soil_K,potassium_percent,,Assuming units are % based on the range of values
41
soil_Mg,magnesium_percent,,Assuming units are % based on the range of values
42
soil_Ca,calcium_percent,,Assuming units are % based on the range of values
43
soil_Na,sodium_percent,,Assuming units are % based on the range of values
44
soil_acidity,acidity_percent,"/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
45
soil_base,baseSaturation_percent,,Assuming units are % based on the range of values
46
soil_cation_cap,cationExchangeCapacity_cmol_kg,,
47
soil_conductivity,conductivity,,
48
organic_percent,organic_percent,,
49
soil_texture,texture,,
50
RevisionComments,*RevisionComments,,
51
Locality_Description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
52
topography_desc,landform,,
53
vegetation_1,communityID,/_alt/2,Second because less detailed than vegetation_2
54
vegetation_2,communityID,/_alt/1,
55
Habitat,habitat,,
56
life_zone_code,communityID,/_alt/4,
57
life_zone,communityID,/_alt/3,
58
PlotMethod,samplingProtocol,,
59
plot_area_ha,plotArea_ha,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
60
recensused,*recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
61
date_start,startDate,,
62
date_finish,endDate,,
63
plot_administrator,*plot_administrator,,
64
plot_notes,locationRemarks,,
65
tmp_del,*tmp_del,,"3 plots contain ""del"" in this field and 3 in AccessCode"
66
lookup_MethodCode_Description,observationMeasure,,
1
SALVIAS,VegCore,Filter,Comments
2
MethodCode,OMIT,,Not globally unique after lookup_MethodCode_Description is combined with PlotMethod
3
PlotID,locationID,,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4
orig_filename,*orig_filename,,
5
AccessCode,accessRights,"/_map:[1=private,2=""metadata only"",3=public]/value","3 plots contain 3 in this field and ""del"" in tmp_del"
6
project_id,projectID,,
7
PrimOwnerID,*PrimOwnerID,,
8
SiteCode,locationName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
9
SiteName,*SiteName,,
10
new_world,*new_world,,
11
MajorGeo,continent,,
12
Country,country,,
13
PolDiv1,stateProvince,,Brad: No; pol1=stateProvince
14
pol1_type,*pol1_type,,
15
pol2,county,,Brad: No pol2=countyParish
16
pol2_type,*pol2_type,,
17
lat_string,verbatimLatitude,,
18
long_string,verbatimLongitude,,
19
LatDec,decimalLatitude,,
20
LongDec,decimalLongitude,,
21
lat_long_accuracy,*lat_long_accuracy,,"Plain text description of accuracy, not numeric"
22
Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
23
elev_max_m,maximumElevationInMeters,,
24
elev_min_m,minimumElevationInMeters,,
25
Precip,precipitation_mm,,
26
ElevSource,*ElevSource,,
27
Temp,temperature_C,,
28
PrecipSource,*PrecipSource,,
29
TempSource,*TempSource,,
30
bearing,*bearing,,
31
slope_aspect,slopeAspect,,
32
slope_gradient,slopeGradient,,
33
clay_percent,clay_percent,,
34
silt_percent,silt_percent,,
35
sand_percent,sand_percent,,
36
pH,ph,,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
37
soil_N,nitrogen_percent,,Assuming units are % based on the range of values
38
soil_P,phosphorus_percent,"/_map:[""<1,5""=0,*=*]/value",Assuming units are % based on the range of values
39
soil_C,carbon_percent,,Assuming units are % based on the range of values
40
soil_K,potassium_percent,,Assuming units are % based on the range of values
41
soil_Mg,magnesium_percent,,Assuming units are % based on the range of values
42
soil_Ca,calcium_percent,,Assuming units are % based on the range of values
43
soil_Na,sodium_percent,,Assuming units are % based on the range of values
44
soil_acidity,acidity_percent,"/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
45
soil_base,baseSaturation_percent,,Assuming units are % based on the range of values
46
soil_cation_cap,cationExchangeCapacity_cmol_kg,,
47
soil_conductivity,conductivity,,
48
organic_percent,organic_percent,,
49
soil_texture,texture,,
50
RevisionComments,*RevisionComments,,
51
Locality_Description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
52
topography_desc,landform,,
53
vegetation_1,communityID,/_alt/2,Second because less detailed than vegetation_2
54
vegetation_2,communityID,/_alt/1,
55
Habitat,habitat,,
56
life_zone_code,communityID,/_alt/4,
57
life_zone,communityID,/_alt/3,
58
PlotMethod,samplingProtocol,,
59
plot_area_ha,plotArea_ha,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
60
recensused,*recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
61
date_start,startDate,,
62
date_finish,endDate,,
63
plot_administrator,*plot_administrator,,
64
plot_notes,locationRemarks,,
65
tmp_del,*tmp_del,,"3 plots contain ""del"" in this field and 3 in AccessCode"
66
lookup_MethodCode_Description,observationMeasure,,
inputs/HVAA/Source/map.csv
1
HVAA,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
1
HVAA,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
inputs/HVAA/Specimen/map.csv
1
HVAA,VegCore,Filter,Comments
2
institutionCode,specimenHolderInstitutions,,
3
collectionCode,collection,,
4
basisOfRecord,basisOfRecord,,
5
catalogNumber,accessionNumber,,
6
otherCatalogNumbers,otherCatalogNumbers,,
7
ownerInstitutionCode,specimenOwner,,
8
family,family,,
9
scientificName,scientificName,,
10
genus,genus,,
11
specificEpithet,specificEpithet,,
12
taxonRank,taxonRank,,
13
infraspecificEpithet,infraspecificEpithet,,
14
scientificNameAuthorship,scientificNameAuthorship,,
15
taxonRemarks,taxonRemarks,,
16
identifiedBy,identifiedBy,,
17
dateIdentified,dateIdentified,,
18
identificationReferences,identificationReferences,,
19
identificationRemarks,identificationRemarks,,
20
identificationQualifier,identificationQualifier,,
21
typeStatus,typeStatus,,
22
recordedBy,recordedBy,,
23
recordNumber,collectorNumber,,
24
eventDate,eventDate,,
25
year,year,,
26
month,month,,
27
day,day,,
28
startDayOfYear,startDayOfYear,,
29
endDayOfYear,endDayOfYear,,
30
verbatimEventDate,verbatimEventDate,,
31
habitat,habitat,,
32
fieldNotes,UNUSED,,
33
fieldNumber,collectorNumber,,
34
occurrenceRemarks,occurrenceRemarks,/_merge/1,
35
dynamicProperties,occurrenceRemarks,/_merge/2,Contains occurrenceRemarks data
36
associatedTaxa,associatedTaxa,,
37
reproductiveCondition,reproductiveCondition,,
38
establishmentMeans,establishmentMeans,,
39
lifeStage,lifeStage,,
40
sex,sex,,
41
individualCount,individualCount,,
42
samplingProtocol,samplingProtocol,,
43
preparations,preparations,,
44
country,country,,
45
stateProvince,stateProvince,,
46
county,county,,
47
municipality,municipality,,
48
locality,locality,,
49
decimalLatitude,decimalLatitude,,
50
decimalLongitude,decimalLongitude,,
51
geodeticDatum,geodeticDatum,,
52
coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,
53
footprintWKT,footprintWKT,,
54
coordinatePrecision,UNUSED,,
55
locationRemarks,locationRemarks,,
56
verbatimCoordinates,verbatimCoordinates,,
57
verbatimCoordinateSystem,coordinateUnits,,
58
georeferencedBy,georeferencedBy,,
59
georeferenceProtocol,georeferenceProtocol,,
60
georeferenceSources,georeferenceSources,,
61
georeferenceVerificationStatus,georeferenceVerificationStatus,,
62
georeferenceRemarks,georeferenceRemarks,,
63
minimumElevationInMeters,minimumElevationInMeters,,
64
maximumElevationInMeters,maximumElevationInMeters,,
65
verbatimElevation,verbatimElevation,,
66
disposition,disposition,,
67
modified,modified,,
68
language,language,,
69
rights,rights,,
70
rightsHolder,dataOwners,,
71
accessRights,accessRights,,
72
symbiotaId,occurrenceID,,
1
HVAA,VegCore,Filter,Comments
2
institutionCode,specimenHolderInstitutions,,
3
collectionCode,collection,,
4
basisOfRecord,basisOfRecord,,
5
catalogNumber,accessionNumber,,
6
otherCatalogNumbers,otherCatalogNumbers,,
7
ownerInstitutionCode,specimenOwner,,
8
family,family,,
9
scientificName,scientificName,,
10
genus,genus,,
11
specificEpithet,specificEpithet,,
12
taxonRank,taxonRank,,
13
infraspecificEpithet,infraspecificEpithet,,
14
scientificNameAuthorship,scientificNameAuthorship,,
15
taxonRemarks,taxonRemarks,,
16
identifiedBy,identifiedBy,,
17
dateIdentified,dateIdentified,,
18
identificationReferences,identificationReferences,,
19
identificationRemarks,identificationRemarks,,
20
identificationQualifier,identificationQualifier,,
21
typeStatus,typeStatus,,
22
recordedBy,recordedBy,,
23
recordNumber,collectorNumber,,
24
eventDate,eventDate,,
25
year,year,,
26
month,month,,
27
day,day,,
28
startDayOfYear,startDayOfYear,,
29
endDayOfYear,endDayOfYear,,
30
verbatimEventDate,verbatimEventDate,,
31
habitat,habitat,,
32
fieldNotes,UNUSED,,
33
fieldNumber,collectorNumber,,
34
occurrenceRemarks,occurrenceRemarks,/_merge/1,
35
dynamicProperties,occurrenceRemarks,/_merge/2,Contains occurrenceRemarks data
36
associatedTaxa,associatedTaxa,,
37
reproductiveCondition,reproductiveCondition,,
38
establishmentMeans,establishmentMeans,,
39
lifeStage,lifeStage,,
40
sex,sex,,
41
individualCount,individualCount,,
42
samplingProtocol,samplingProtocol,,
43
preparations,preparations,,
44
country,country,,
45
stateProvince,stateProvince,,
46
county,county,,
47
municipality,municipality,,
48
locality,locality,,
49
decimalLatitude,decimalLatitude,,
50
decimalLongitude,decimalLongitude,,
51
geodeticDatum,geodeticDatum,,
52
coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,
53
footprintWKT,footprintWKT,,
54
coordinatePrecision,UNUSED,,
55
locationRemarks,locationRemarks,,
56
verbatimCoordinates,verbatimCoordinates,,
57
verbatimCoordinateSystem,coordinateUnits,,
58
georeferencedBy,georeferencedBy,,
59
georeferenceProtocol,georeferenceProtocol,,
60
georeferenceSources,georeferenceSources,,
61
georeferenceVerificationStatus,georeferenceVerificationStatus,,
62
georeferenceRemarks,georeferenceRemarks,,
63
minimumElevationInMeters,minimumElevationInMeters,,
64
maximumElevationInMeters,maximumElevationInMeters,,
65
verbatimElevation,verbatimElevation,,
66
disposition,disposition,,
67
modified,modified,,
68
language,language,,
69
rights,rights,,
70
rightsHolder,dataOwners,,
71
accessRights,accessRights,,
72
symbiotaId,occurrenceID,,
inputs/MT/Source/map.csv
1
MT,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
1
MT,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
inputs/MT/Specimen/map.csv
1
MT,VegCore,Filter,Comments
2
id,dataProviderRecordID,,
3
establishmentMeans,establishmentMeans,,
4
locality,locality,,
5
language,language,,
6
collectionID,collectionURL,,
7
occurrenceRemarks,occurrenceRemarks,,
8
type,type,,
9
institutionCode,specimenHolderInstitutions,,
10
rights,rights,,
11
family,family,,
12
continent,continent,,
13
collectionCode,collection,,
14
datasetName,dataset,,
15
rightsHolder,dataOwners,,
16
genus,genus,,
17
basisOfRecord,basisOfRecord,,
18
individualCount,individualCount,,
19
countryCode,countryCode,,
1
MT,VegCore,Filter,Comments
2
id,dataProviderRecordID,,
3
establishmentMeans,establishmentMeans,,
4
locality,locality,,
5
language,language,,
6
collectionID,collectionURL,,
7
occurrenceRemarks,occurrenceRemarks,,
8
type,type,,
9
institutionCode,specimenHolderInstitutions,,
10
rights,rights,,
11
family,family,,
12
continent,continent,,
13
collectionCode,collection,,
14
datasetName,dataset,,
15
rightsHolder,dataOwners,,
16
genus,genus,,
17
basisOfRecord,basisOfRecord,,
18
individualCount,individualCount,,
19
countryCode,countryCode,,
inputs/test_taxonomic_names/Source/map.csv
1
test_taxonomic_names,VegCore,Filter,Comments
2
:personal communication,sourceType,,
1
test_taxonomic_names,VegCore,Filter,Comments
2
:personal communication,sourceType,,
inputs/test_taxonomic_names/Taxon/map.csv
1
test_taxonomic_names,VegCore,Filter,Comments
2
scientificNameID,scientificNameID,,
3
scientificName,taxonName,,
1
test_taxonomic_names,VegCore,Filter,Comments
2
scientificNameID,scientificNameID,,
3
scientificName,taxonName,,
inputs/XAL/Source/map.csv
1
XAL,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
1
XAL,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
inputs/XAL/Specimen/map.csv
1
XAL:/content/record/,VegCore,Filter,Comments
2
darwin:DateLastModified,modified,,
3
darwin:InstitutionCode,specimenHolderInstitutions,,
4
darwin:CollectionCode,collection,,
5
darwin:CatalogNumber,accessionNumber,,
6
darwin:ScientificName,taxonName,,
7
darwin:BasisOfRecord,basisOfRecord,,
8
darwin:Kingdom,kingdom,,
9
darwin:Phylum,phylum,,
10
darwin:Class,class,,
11
darwin:Order,order,,
12
darwin:Family,family,,
13
darwin:Genus,genus,,
14
darwin:Species,specificEpithet,,
15
darwin:Subspecies,subspecies,,
16
darwin:ScientificNameAuthor,scientificNameAuthorship,,
17
darwin:IdentifiedBy,identifiedBy,,
18
darwin:YearIdentified,yearIdentified,,
19
darwin:MonthIdentified,monthIdentified,,
20
darwin:DayIdentified,dayIdentified,,
21
darwin:TypeStatus,typeStatus,,
22
darwin:CollectorNumber,collectorNumber,,
23
darwin:FieldNumber,UNUSED,,This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber).
24
darwin:Collector,recordedBy,,
25
darwin:YearCollected,yearCollected,,
26
darwin:MonthCollected,monthCollected,,
27
darwin:DayCollected,dayCollected,,
28
darwin:JulianDay,day,,
29
darwin:TimeOfDay,eventTime,,
30
darwin:ContinentOcean,continent,,
31
darwin:Country,country,,
32
darwin:StateProvince,stateProvince,,
33
darwin:County,county,,
34
darwin:Locality,locality,,
35
darwin:Longitude,decimalLongitude,,
36
darwin:Latitude,decimalLatitude,,
37
darwin:CoordinatePrecision,UNUSED,,
38
darwin:MinimumElevation,minimumElevationInMeters,,
39
darwin:MaximumElevation,maximumElevationInMeters,,
40
darwin:MinimumDepth,minimumDepthInMeters,,
41
darwin:MaximumDepth,maximumDepthInMeters,,
42
darwin:Sex,sex,,
43
darwin:PreparationType,preparations,,
44
darwin:IndividualCount,individualCount,,
45
darwin:PreviousCatalogNumber,otherCatalogNumbers,,
46
darwin:RelationshipType,relationshipOfResource,,
47
darwin:RelatedCatalogItem,relatedResourceID,,
48
darwin:Notes,occurrenceRemarks,,
1
XAL:/content/record/,VegCore,Filter,Comments
2
darwin:DateLastModified,modified,,
3
darwin:InstitutionCode,specimenHolderInstitutions,,
4
darwin:CollectionCode,collection,,
5
darwin:CatalogNumber,accessionNumber,,
6
darwin:ScientificName,taxonName,,
7
darwin:BasisOfRecord,basisOfRecord,,
8
darwin:Kingdom,kingdom,,
9
darwin:Phylum,phylum,,
10
darwin:Class,class,,
11
darwin:Order,order,,
12
darwin:Family,family,,
13
darwin:Genus,genus,,
14
darwin:Species,specificEpithet,,
15
darwin:Subspecies,subspecies,,
16
darwin:ScientificNameAuthor,scientificNameAuthorship,,
17
darwin:IdentifiedBy,identifiedBy,,
18
darwin:YearIdentified,yearIdentified,,
19
darwin:MonthIdentified,monthIdentified,,
20
darwin:DayIdentified,dayIdentified,,
21
darwin:TypeStatus,typeStatus,,
22
darwin:CollectorNumber,collectorNumber,,
23
darwin:FieldNumber,UNUSED,,This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber).
24
darwin:Collector,recordedBy,,
25
darwin:YearCollected,yearCollected,,
26
darwin:MonthCollected,monthCollected,,
27
darwin:DayCollected,dayCollected,,
28
darwin:JulianDay,day,,
29
darwin:TimeOfDay,eventTime,,
30
darwin:ContinentOcean,continent,,
31
darwin:Country,country,,
32
darwin:StateProvince,stateProvince,,
33
darwin:County,county,,
34
darwin:Locality,locality,,
35
darwin:Longitude,decimalLongitude,,
36
darwin:Latitude,decimalLatitude,,
37
darwin:CoordinatePrecision,UNUSED,,
38
darwin:MinimumElevation,minimumElevationInMeters,,
39
darwin:MaximumElevation,maximumElevationInMeters,,
40
darwin:MinimumDepth,minimumDepthInMeters,,
41
darwin:MaximumDepth,maximumDepthInMeters,,
42
darwin:Sex,sex,,
43
darwin:PreparationType,preparations,,
44
darwin:IndividualCount,individualCount,,
45
darwin:PreviousCatalogNumber,otherCatalogNumbers,,
46
darwin:RelationshipType,relationshipOfResource,,
47
darwin:RelatedCatalogItem,relatedResourceID,,
48
darwin:Notes,occurrenceRemarks,,
inputs/NCU/Source/map.csv
1
NCU,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
1
NCU,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
inputs/NCU/Specimen/map.csv
1
NCU,VegCore,Filter,Comments
2
SpecimenPK,occurrenceID,,
3
DerivedFromID,*DerivedFromID,,
4
CollectionObjectTypeID,*CollectionObjectTypeID,,
5
CollectionObjectID,*CollectionObjectID,,
6
database,*database,,
7
OwnerInstitution,specimenHolderInstitutions,/_alt/2,
8
CollectionGUID,collectionURL,,
9
OriginalTaxonLabel,originalScientificName,,
10
CurrentScientificName,taxonName,,
11
CurrentScientificNameWithAuthor,scientificName,,
12
TypeStatus,typeStatus,,
13
CollectionDate,dateCollected,,
14
BarCode,OMIT,,"Omitted because this isn't specified on all rows, but SpecimenPK is"
15
CatalogNumber,accessionNumber,,
16
CatalogSeriesPrefix,specimenHolderInstitutions,/_alt/1,
17
Description,occurrenceRemarks,,
18
LandOwner,*LandOwner,,
19
BlockLocationReason,*BlockLocationReason,,
20
BlockSpecificLocation,*BlockSpecificLocation,,
21
VerbatimLocality,verbatimLocality,/_alt/1,
22
EventRemarks,eventRemarks,,
23
Country,country,,
24
State,stateProvince,,
25
county,county,,
26
FIPSStateCounty,*FIPSStateCounty,,
27
CityLocality,verbatimLocality,/_alt/2,
28
Cultivated,cultivated,"/_map:[0=,""-1""=true,*=*]/value","cultivated can only be true or NULL, not false"
29
Latitude1,decimalLatitude,,
30
Longitude1,decimalLongitude,,
31
Loc_AltN,verbatimLatitude,,
32
Loc_AltE,verbatimLongitude,,
33
firstCollectorName,recordedBy,,
34
firstCollectorRemarks,collectorNumber,,"Actually the collector's number, not remarks"
35
LastAnnotationLabelTaxon,*LastAnnotationLabelTaxon,,
36
LastAnnotationDateVerbatim,*LastAnnotationDateVerbatim,,
37
LastAnnotationRemarks,*LastAnnotationRemarks,,
38
lastAnnotationAgent,*lastAnnotationAgent,,
1
NCU,VegCore,Filter,Comments
2
SpecimenPK,occurrenceID,,
3
DerivedFromID,*DerivedFromID,,
4
CollectionObjectTypeID,*CollectionObjectTypeID,,
5
CollectionObjectID,*CollectionObjectID,,
6
database,*database,,
7
OwnerInstitution,specimenHolderInstitutions,/_alt/2,
8
CollectionGUID,collectionURL,,
9
OriginalTaxonLabel,originalScientificName,,
10
CurrentScientificName,taxonName,,
11
CurrentScientificNameWithAuthor,scientificName,,
12
TypeStatus,typeStatus,,
13
CollectionDate,dateCollected,,
14
BarCode,OMIT,,"Omitted because this isn't specified on all rows, but SpecimenPK is"
15
CatalogNumber,accessionNumber,,
16
CatalogSeriesPrefix,specimenHolderInstitutions,/_alt/1,
17
Description,occurrenceRemarks,,
18
LandOwner,*LandOwner,,
19
BlockLocationReason,*BlockLocationReason,,
20
BlockSpecificLocation,*BlockSpecificLocation,,
21
VerbatimLocality,verbatimLocality,/_alt/1,
22
EventRemarks,eventRemarks,,
23
Country,country,,
24
State,stateProvince,,
25
county,county,,
26
FIPSStateCounty,*FIPSStateCounty,,
27
CityLocality,verbatimLocality,/_alt/2,
28
Cultivated,cultivated,"/_map:[0=,""-1""=true,*=*]/value","cultivated can only be true or NULL, not false"
29
Latitude1,decimalLatitude,,
30
Longitude1,decimalLongitude,,
31
Loc_AltN,verbatimLatitude,,
32
Loc_AltE,verbatimLongitude,,
33
firstCollectorName,recordedBy,,
34
firstCollectorRemarks,collectorNumber,,"Actually the collector's number, not remarks"
35
LastAnnotationLabelTaxon,*LastAnnotationLabelTaxon,,
36
LastAnnotationDateVerbatim,*LastAnnotationDateVerbatim,,
37
LastAnnotationRemarks,*LastAnnotationRemarks,,
38
lastAnnotationAgent,*lastAnnotationAgent,,
inputs/bien2_traits/TraitObservation/map.csv
1
bien2_traits,VegCore,Filter,Comments
2
TraitObservationID,occurrenceID,,
3
TaxonomyID,UNUSED,,Always 0
4
Family,family,,
5
Genus,genus,,
6
SpecificEpithet,specificEpithet,,
7
InfraspecificRank,taxonRank,,
8
InfraspecificEpithet,infraspecificEpithet,,
9
Taxon,taxonName,,
10
AuthorOfScientificName,scientificNameAuthorship,,
11
Habit,growthForm,,
12
TraitName,measurementName,,
13
TraitValue,measurementValue,,
14
Unit,measurementUnit,,
15
Method,samplingProtocol,,
16
Region,*Region,,
17
Country,country,,
18
StateProvince,stateProvince,,
19
LowerPolitical,*LowerPolitical,,
20
LocalityDescription,verbatimLocality,,
21
VerbatimLatitude,verbatimLatitude,,
22
VerbatimLongitude,verbatimLongitude,,
23
VerbatimElevation,verbatimElevation,,
24
Source,sourceType,,
25
URLSource,*URLSource,,
26
SourceCitation,*SourceCitation,,
27
SourceID,*SourceID,,
28
VisitingDate,*VisitingDate,,
29
ReferenceID,*ReferenceID,,
30
Access,*Access,,
31
Project_PI,*Project_PI,,
32
Project_PI_contact,*Project_PI_contact,,
33
Observation,*Observation,,
34
Authorship,*Authorship,,
35
AuthorshipContact,*AuthorshipContact,,
36
TaxonomyID_index,OMIT,,
37
Family_index,OMIT,,
38
Taxon_index,OMIT,,
39
TraitName_index,OMIT,,
40
ReferenceID_index,OMIT,,
1
bien2_traits,VegCore,Filter,Comments
2
TraitObservationID,occurrenceID,,
3
TaxonomyID,UNUSED,,Always 0
4
Family,family,,
5
Genus,genus,,
6
SpecificEpithet,specificEpithet,,
7
InfraspecificRank,taxonRank,,
8
InfraspecificEpithet,infraspecificEpithet,,
9
Taxon,taxonName,,
10
AuthorOfScientificName,scientificNameAuthorship,,
11
Habit,growthForm,,
12
TraitName,measurementName,,
13
TraitValue,measurementValue,,
14
Unit,measurementUnit,,
15
Method,samplingProtocol,,
16
Region,*Region,,
17
Country,country,,
18
StateProvince,stateProvince,,
19
LowerPolitical,*LowerPolitical,,
20
LocalityDescription,verbatimLocality,,
21
VerbatimLatitude,verbatimLatitude,,
22
VerbatimLongitude,verbatimLongitude,,
23
VerbatimElevation,verbatimElevation,,
24
Source,sourceType,,
25
URLSource,*URLSource,,
26
SourceCitation,*SourceCitation,,
27
SourceID,*SourceID,,
28
VisitingDate,*VisitingDate,,
29
ReferenceID,*ReferenceID,,
30
Access,*Access,,
31
Project_PI,*Project_PI,,
32
Project_PI_contact,*Project_PI_contact,,
33
Observation,*Observation,,
34
Authorship,*Authorship,,
35
AuthorshipContact,*AuthorshipContact,,
36
TaxonomyID_index,OMIT,,
37
Family_index,OMIT,,
38
Taxon_index,OMIT,,
39
TraitName_index,OMIT,,
40
ReferenceID_index,OMIT,,
inputs/bien2_traits/Source/map.csv
1
bien2_traits,VegCore,Filter,Comments
2
:primary database,sourceType,,
3
:specimen,observationGranularity,,
1
bien2_traits,VegCore,Filter,Comments
2
:primary database,sourceType,,
3
:specimen,observationGranularity,,
inputs/TEAM/Source/map.csv
1
TEAM,VegCore,Filter,Comments
2
:primary database,sourceType,,
3
:plot,observationGranularity,,
1
TEAM,VegCore,Filter,Comments
2
:primary database,sourceType,,
3
:plot,observationGranularity,,
inputs/TEAM/VL/map.csv
1
TEAM,VegCore,Filter,Comments
2
Id,individualObservationID,,
3
Observation Date,eventDate,,
4
Family,family,,
5
Genus,genus,,
6
Species,specificEpithet,,
7
Names of Collectors,recordedBy,,
8
Diameter at 1.3m,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
9
Max Diameter,*Max Diameter,,
10
Max Diameter POM,*Max Diameter POM,,
11
Condition Codes,*Condition Codes,,
12
Location Codes,*Location Codes,,
13
Sampling Period,*Sampling Period,,
14
Comments,*Comments,,
15
Data Level,*Data Level,,
16
Sampling Unit Name,*Sampling Unit Name,,
17
Latitude,decimalLatitude,,
18
Longitude,decimalLongitude,,
19
Method,OMIT,,"Just contains ""Derived"", for 357 rows"
20
Subplot Number,subplot,,
21
1ha Plot X Coordinate,organismX_m,,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
22
1ha Plot Y Coordinate,organismY_m,,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
23
Tree Number,tag,,
24
Site Name,projectName,,
25
1ha Plot Number,locationName,,
26
Protocol Version,*Protocol Version,,
27
Data Set Creator Institution,*Data Set Creator Institution,,
28
Data Set Creator Scientist,*Data Set Creator Scientist,,
29
Data Set Contact,*Data Set Contact,,
30
:1,plotArea_ha,,"From ""1ha Plot Number"" field name"
1
TEAM,VegCore,Filter,Comments
2
Id,individualObservationID,,
3
Observation Date,eventDate,,
4
Family,family,,
5
Genus,genus,,
6
Species,specificEpithet,,
7
Names of Collectors,recordedBy,,
8
Diameter at 1.3m,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
9
Max Diameter,*Max Diameter,,
10
Max Diameter POM,*Max Diameter POM,,
11
Condition Codes,*Condition Codes,,
12
Location Codes,*Location Codes,,
13
Sampling Period,*Sampling Period,,
14
Comments,*Comments,,
15
Data Level,*Data Level,,
16
Sampling Unit Name,*Sampling Unit Name,,
17
Latitude,decimalLatitude,,
18
Longitude,decimalLongitude,,
19
Method,OMIT,,"Just contains ""Derived"", for 357 rows"
20
Subplot Number,subplot,,
21
1ha Plot X Coordinate,organismX_m,,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
22
1ha Plot Y Coordinate,organismY_m,,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
23
Tree Number,tag,,
24
Site Name,projectName,,
25
1ha Plot Number,locationName,,
26
Protocol Version,*Protocol Version,,
27
Data Set Creator Institution,*Data Set Creator Institution,,
28
Data Set Creator Scientist,*Data Set Creator Scientist,,
29
Data Set Contact,*Data Set Contact,,
30
:1,plotArea_ha,,"From ""1ha Plot Number"" field name"
inputs/TEAM/VT/map.csv
1
TEAM,VegCore,Filter,Comments
2
Id,individualObservationID,,
3
Observation Date,eventDate,,
4
Family,family,,
5
Genus,genus,,
6
Species,specificEpithet,,
7
Names of Collectors,recordedBy,,
8
Diameter,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
9
POM Height,*POM Height,,
10
New Diameter,*New Diameter,,
11
New POM Height,*New POM Height,,
12
Condition Codes,*Condition Codes,,
13
Sampling Period,*Sampling Period,,
14
Comments,*Comments,,
15
Data Level,*Data Level,,
16
Sampling Unit Name,*Sampling Unit Name,,
17
Latitude,decimalLatitude,,
18
Longitude,decimalLongitude,,
19
Spatial Method,OMIT,,"Just contains ""Derived"", for 14927 rows"
20
Subplot Number,subplot,,
21
1ha Plot X Coordinate,organismX_m,,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
22
1ha Plot Y Coordinate,organismY_m,,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
23
Tree Number,tag,,
24
Site Name,projectName,,
25
1ha Plot Number,locationName,,
26
Protocol Version,*Protocol Version,,
27
Data Set Creator Institution,*Data Set Creator Institution,,
28
Data Set Creator Scientist,*Data Set Creator Scientist,,
29
Data Set Contact,*Data Set Contact,,
30
:1,plotArea_ha,,"From ""1ha Plot Number"" field name"
1
TEAM,VegCore,Filter,Comments
2
Id,individualObservationID,,
3
Observation Date,eventDate,,
4
Family,family,,
5
Genus,genus,,
6
Species,specificEpithet,,
7
Names of Collectors,recordedBy,,
8
Diameter,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
9
POM Height,*POM Height,,
10
New Diameter,*New Diameter,,
11
New POM Height,*New POM Height,,
12
Condition Codes,*Condition Codes,,
13
Sampling Period,*Sampling Period,,
14
Comments,*Comments,,
15
Data Level,*Data Level,,
16
Sampling Unit Name,*Sampling Unit Name,,
17
Latitude,decimalLatitude,,
18
Longitude,decimalLongitude,,
19
Spatial Method,OMIT,,"Just contains ""Derived"", for 14927 rows"
20
Subplot Number,subplot,,
21
1ha Plot X Coordinate,organismX_m,,"""Point of intersection {in the X axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot X Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
22
1ha Plot Y Coordinate,organismY_m,,"""Point of intersection {in the Y axis} where the tree was observed in the 1ha plot. {m}"" (1ha Plot Y Coordinate definition on p. 8 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
23
Tree Number,tag,,
24
Site Name,projectName,,
25
1ha Plot Number,locationName,,
26
Protocol Version,*Protocol Version,,
27
Data Set Creator Institution,*Data Set Creator Institution,,
28
Data Set Creator Scientist,*Data Set Creator Scientist,,
29
Data Set Contact,*Data Set Contact,,
30
:1,plotArea_ha,,"From ""1ha Plot Number"" field name"
inputs/TEAM/TEAM_Sites/map.csv
1
TEAM,VegCore,Filter,Comments
2
Site Name,projectName,,
3
Name,locationName,,
4
1ha Plot Coordinate,*1ha Plot Coordinate,,
5
Longitude,decimalLongitude,,
6
Latitude,decimalLatitude,,
7
CollectionDate,eventDate,,
1
TEAM,VegCore,Filter,Comments
2
Site Name,projectName,,
3
Name,locationName,,
4
1ha Plot Coordinate,*1ha Plot Coordinate,,
5
Longitude,decimalLongitude,,
6
Latitude,decimalLatitude,,
7
CollectionDate,eventDate,,
inputs/.geoscrub/Source/map.csv
1
geoscrub,VegCore,Filter,Comments
2
:aggregator,sourceType,,
1
geoscrub,VegCore,Filter,Comments
2
:aggregator,sourceType,,
inputs/.geoscrub/geoscrub_output/map.csv
1
geoscrub,VegCore,Filter,Comments
2
decimallatitude,decimalLatitude,,
3
decimallongitude,decimalLongitude,,
4
country,country,,
5
stateprovince,stateProvince,,
6
county,county,,
7
countrystd,acceptedCountry,,
8
stateprovincestd,acceptedStateProvince,,
9
countystd,acceptedCounty,,
10
latlonvalidity,latLongDomainValid,"/_map:[""-1""=,0=false,1=true]/value",
11
countryvalidity,latLongInCountry,"/_map:[./{""-1"",0}=,1=false,./{2,3}=true]/value",
12
stateprovincevalidity,latLongInStateProvince,"/_map:[./{""-1"",0}=,1=false,./{2,3}=true]/value",
13
countyvalidity,latLongInCounty,"/_map:[./{""-1"",0}=,1=false,./{2,3}=true]/value",
1
geoscrub,VegCore,Filter,Comments
2
decimallatitude,decimalLatitude,,
3
decimallongitude,decimalLongitude,,
4
country,country,,
5
stateprovince,stateProvince,,
6
county,county,,
7
countrystd,acceptedCountry,,
8
stateprovincestd,acceptedStateProvince,,
9
countystd,acceptedCounty,,
10
latlonvalidity,latLongDomainValid,"/_map:[""-1""=,0=false,1=true]/value",
11
countryvalidity,latLongInCountry,"/_map:[./{""-1"",0}=,1=false,./{2,3}=true]/value",
12
stateprovincevalidity,latLongInStateProvince,"/_map:[./{""-1"",0}=,1=false,./{2,3}=true]/value",
13
countyvalidity,latLongInCounty,"/_map:[./{""-1"",0}=,1=false,./{2,3}=true]/value",
inputs/ACAD/Source/map.csv
1
ACAD,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
1
ACAD,VegCore,Filter,Comments
2
:herbarium,sourceType,,
3
:specimen,observationGranularity,,
inputs/ACAD/Specimen/map.csv
1
ACAD,VegCore,Filter,Comments
2
id,dataProviderRecordID,,
3
basisOfRecord,basisOfRecord,,
4
identifiedBy,identifiedBy,,
5
collectionID,collectionURL,,
6
class,class,,
7
geodeticDatum,geodeticDatum,,
8
reproductiveCondition,reproductiveCondition,,
9
decimalLongitude,decimalLongitude,,
10
institutionCode,specimenHolderInstitutions,"/_map:[""Acadia University""=ACAD,*=*]/value",
11
continent,continent,,
12
recordedBy,recordedBy,,
13
county,county,,
14
order,order,,
15
georeferenceSources,georeferenceSources,,
16
language,language,,
17
georeferenceVerificationStatus,georeferenceVerificationStatus,,
18
verbatimElevation,verbatimElevation,,
19
locationRemarks,locationRemarks,,
20
dateIdentified,dateIdentified,,
21
verbatimDepth,verbatimDepth,,
22
municipality,municipality,,
23
infraspecificEpithet,infraspecificEpithet,,
24
modified,modified,,
25
type,type,,
26
specificEpithet,specificEpithet,,
27
identificationRemarks,identificationRemarks,,
28
rightsHolder,dataOwners,,
29
recordNumber,collectorNumber,,
30
eventDate,eventDate,,
31
rights,rights,,
32
occurrenceRemarks,occurrenceRemarks,,
33
habitat,habitat,,
34
family,family,,
35
stateProvince,stateProvince,,
36
scientificNameAuthorship,scientificNameAuthorship,,
37
scientificName,scientificName,,
38
taxonRank,taxonRank,,
39
phylum,phylum,,
40
locality,locality,,
41
kingdom,kingdom,,
42
decimalLatitude,decimalLatitude,,
43
genus,genus,,
44
ownerInstitutionCode,specimenOwner,,
45
collectionCode,collection,,
46
bibliographicCitation,bibliographicCitation,,
47
catalogNumber,accessionNumber,,
48
country,country,,
49
dynamicProperties,dynamicProperties,,
1
ACAD,VegCore,Filter,Comments
2
id,dataProviderRecordID,,
3
basisOfRecord,basisOfRecord,,
4
identifiedBy,identifiedBy,,
5
collectionID,collectionURL,,
6
class,class,,
7
geodeticDatum,geodeticDatum,,
8
reproductiveCondition,reproductiveCondition,,
9
decimalLongitude,decimalLongitude,,
10
institutionCode,specimenHolderInstitutions,"/_map:[""Acadia University""=ACAD,*=*]/value",
11
continent,continent,,
12
recordedBy,recordedBy,,
13
county,county,,
14
order,order,,
15
georeferenceSources,georeferenceSources,,
16
language,language,,
17
georeferenceVerificationStatus,georeferenceVerificationStatus,,
18
verbatimElevation,verbatimElevation,,
19
locationRemarks,locationRemarks,,
20
dateIdentified,dateIdentified,,
21
verbatimDepth,verbatimDepth,,
22
municipality,municipality,,
23
infraspecificEpithet,infraspecificEpithet,,
24
modified,modified,,
25
type,type,,
26
specificEpithet,specificEpithet,,
27
identificationRemarks,identificationRemarks,,
28
rightsHolder,dataOwners,,
29
recordNumber,collectorNumber,,
30
eventDate,eventDate,,
31
rights,rights,,
32
occurrenceRemarks,occurrenceRemarks,,
33
habitat,habitat,,
34
family,family,,
35
stateProvince,stateProvince,,
36
scientificNameAuthorship,scientificNameAuthorship,,
37
scientificName,scientificName,,
38
taxonRank,taxonRank,,
39
phylum,phylum,,
40
locality,locality,,
41
kingdom,kingdom,,
42
decimalLatitude,decimalLatitude,,
43
genus,genus,,
44
ownerInstitutionCode,specimenOwner,,
45
collectionCode,collection,,
46
bibliographicCitation,bibliographicCitation,,
47
catalogNumber,accessionNumber,,
48
country,country,,
49
dynamicProperties,dynamicProperties,,
inputs/.NCBI/Source/map.csv
1
NCBI,VegCore,Filter,Comments
2
:primary database,sourceType,,
1
NCBI,VegCore,Filter,Comments
2
:primary database,sourceType,,
inputs/.NCBI/nodes/map.csv
1
NCBI,VegCore,Filter,Comments
2
tax_id,taxonID,,
3
nodes.src.row_num,*nodes.src.row_num,,
4
parent tax_id,parentTaxonID,,
5
rank,taxonRank,,
6
embl code,*embl code,,
7
4,*4,,
8
5,*5,,
9
6,*6,,
10
7,*7,,
11
8,*8,,
12
9,*9,,
13
names.src.row_num,*names.src.row_num,,
14
name_txt,taxonNameOrEpithet,,
15
unique name,*unique name,,
16
name class,*name class,,
1
NCBI,VegCore,Filter,Comments
2
tax_id,taxonID,,
3
nodes.src.row_num,*nodes.src.row_num,,
4
parent tax_id,parentTaxonID,,
5
rank,taxonRank,,
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