Project

General

Profile

« Previous | Next » 

Revision 8176

Added by Aaron Marcuse-Kubitza almost 12 years ago

inputs/input.Makefile: %/.map.csv.last_cleanup: Run fix_line_endings after canon/translate to standardize Python's \r\n line endings back to \n. This prevents issues with mixed line endings because LibreOffice (and probably Excel) treat all cell-internal line endings as \n but row line endings as whatever the file had, while text editors like jEdit translate all line endings to whatever the autodetected line ending is. (This creates spurious line ending diffs when a map spreadsheet containing multiline cells is edited in a text editor.)

View differences:

map.csv
1 
BRIT,VegCore,Filter,Comments
2 
specimen_id,dataProviderRecordID,,
3 
Institution_Code,specimenHolderInstitutions,,
4 
Global_Unique_Identifier,UNUSED,,
5 
Collector_Abbrev_Name,recordedBy,/_join/1,
6 
Collection_Team,recordedBy,/_join/2,
7 
Collection_Number,collectorNumber,,
8 
Date_of_Collection,dateCollected,,
9 
Year_Collected,yearCollected,,
10 
Month_Collected,monthCollected,,
11 
Day_Collected,dayCollected,,
12 
Catalog_Number,accessionNumber,,
13 
Scientific_Name,scientificName,,
14 
Kingdom_Name,kingdom,,
15 
Division_Name,phylum,,
16 
Class_Name,class,,
17 
Subclass_Name,*subclass,,
18 
Order_Name,order,,
19 
Family_Name,family,,
20 
Genus_Name,genus,,
21 
Specific_Epithet,specificEpithet,,
22 
Sp_Authority,scientificNameAuthorship,,
23 
Infra_Rank,infraspecificRank,,
24 
Infra_Epithet,infraspecificEpithet,,
25 
Local_Name,vernacularName,,
26 
Continent_Name,continent,,
27 
Country_Name,country,,
28 
Region_Name,stateProvince,,
29 
Subregion_Name,county,,
30 
Closest_Town,UNUSED,,
31 
Research_Site_Name,*Research_Site_Name,,
32 
Project_Name,projectName,,
33 
Locality_Summary,locality,/_join/1,
34 
Locality_Description,locality,/_join/2,
35 
Locality_Description,occurrenceRemarks,"/_if[@name=""if has Locality_Description""]/cond",
36 
Locality_Site_Specific,locality,/_join/3,
37 
Habitat_Description,habitat,/_join/1,
38 
Habitat_Summary,habitat,/_join/2,
39 
Soil_Description,*Soil_Description,,
40 
Notes_Plant,occurrenceRemarks,"/_if[@name=""if has Locality_Description""]/then",
41 
Phenology_Stage,reproductiveCondition,,
42 
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values
43 
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values
44 
DBH_Min,diameterBreastHeight_cm,/_avg/1,Assuming units based on the range and precision of values
45 
DBH_Max,diameterBreastHeight_cm,/_avg/2,Assuming units based on the range and precision of values
46 
Latitude,decimalLatitude,,
47 
Longitude,decimalLongitude,,
48 
Coordinate_Uncertainity,coordinateUncertaintyInMeters,,Assuming units based on the range and precision of values
49 
Elevation_Min,minimumElevationInMeters,,Assuming units based on the range and precision of values
50 
Elevation_Max,maximumElevationInMeters,,Assuming units based on the range and precision of values
51 
Basis_Of_Specimen,basisOfRecord,,
52 
Auxilirary_Collections,UNUSED,,
53 
Collection_Method,samplingProtocol,,
54 
Dubpliate_Herbarium,UNUSED,,
55 
Duplicates,*Duplicates,,# of duplicates
56 
Type_Specimen,UNUSED,,
57 
Updated_date,modified,,
58 
Determined_By_Name,identifiedBy,,
59 
Determined_By_Date,dateIdentified,,
60 
Year_Identified,yearIdentified,,
61 
Month_Identified,monthIdentified,,
62 
Day_Identified,dayIdentified,,
1 
BRIT,VegCore,Filter,Comments
2 
specimen_id,dataProviderRecordID,,
3 
Institution_Code,specimenHolderInstitutions,,
4 
Global_Unique_Identifier,UNUSED,,
5 
Collector_Abbrev_Name,recordedBy,/_join/1,
6 
Collection_Team,recordedBy,/_join/2,
7 
Collection_Number,collectorNumber,,
8 
Date_of_Collection,dateCollected,,
9 
Year_Collected,yearCollected,,
10 
Month_Collected,monthCollected,,
11 
Day_Collected,dayCollected,,
12 
Catalog_Number,accessionNumber,,
13 
Scientific_Name,scientificName,,
14 
Kingdom_Name,kingdom,,
15 
Division_Name,phylum,,
16 
Class_Name,class,,
17 
Subclass_Name,*subclass,,
18 
Order_Name,order,,
19 
Family_Name,family,,
20 
Genus_Name,genus,,
21 
Specific_Epithet,specificEpithet,,
22 
Sp_Authority,scientificNameAuthorship,,
23 
Infra_Rank,infraspecificRank,,
24 
Infra_Epithet,infraspecificEpithet,,
25 
Local_Name,vernacularName,,
26 
Continent_Name,continent,,
27 
Country_Name,country,,
28 
Region_Name,stateProvince,,
29 
Subregion_Name,county,,
30 
Closest_Town,UNUSED,,
31 
Research_Site_Name,*Research_Site_Name,,
32 
Project_Name,projectName,,
33 
Locality_Summary,locality,/_join/1,
34 
Locality_Description,locality,/_join/2,
35 
Locality_Description,occurrenceRemarks,"/_if[@name=""if has Locality_Description""]/cond",
36 
Locality_Site_Specific,locality,/_join/3,
37 
Habitat_Description,habitat,/_join/1,
38 
Habitat_Summary,habitat,/_join/2,
39 
Soil_Description,*Soil_Description,,
40 
Notes_Plant,occurrenceRemarks,"/_if[@name=""if has Locality_Description""]/then",
41 
Phenology_Stage,reproductiveCondition,,
42 
Height_Min,height_m,/_avg/1,Assuming units based on the range and precision of values
43 
Height_Max,height_m,/_avg/2,Assuming units based on the range and precision of values
44 
DBH_Min,diameterBreastHeight_cm,/_avg/1,Assuming units based on the range and precision of values
45 
DBH_Max,diameterBreastHeight_cm,/_avg/2,Assuming units based on the range and precision of values
46 
Latitude,decimalLatitude,,
47 
Longitude,decimalLongitude,,
48 
Coordinate_Uncertainity,coordinateUncertaintyInMeters,,Assuming units based on the range and precision of values
49 
Elevation_Min,minimumElevationInMeters,,Assuming units based on the range and precision of values
50 
Elevation_Max,maximumElevationInMeters,,Assuming units based on the range and precision of values
51 
Basis_Of_Specimen,basisOfRecord,,
52 
Auxilirary_Collections,UNUSED,,
53 
Collection_Method,samplingProtocol,,
54 
Dubpliate_Herbarium,UNUSED,,
55 
Duplicates,*Duplicates,,# of duplicates
56 
Type_Specimen,UNUSED,,
57 
Updated_date,modified,,
58 
Determined_By_Name,identifiedBy,,
59 
Determined_By_Date,dateIdentified,,
60 
Year_Identified,yearIdentified,,
61 
Month_Identified,monthIdentified,,
62 
Day_Identified,dayIdentified,,

Also available in: Unified diff