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Revision 8176

inputs/input.Makefile: %/.map.csv.last_cleanup: Run fix_line_endings after canon/translate to standardize Python's \r\n line endings back to \n. This prevents issues with mixed line endings because LibreOffice (and probably Excel) treat all cell-internal line endings as \n but row line endings as whatever the file had, while text editors like jEdit translate all line endings to whatever the autodetected line ending is. (This creates spurious line ending diffs when a map spreadsheet containing multiline cells is edited in a text editor.)

View differences:

map.csv
1
CVS,VegCore,Filter,Comments
2
OBSERVATION_ID,eventID,,
3
PREVIOUSOBS_ID,*PREVIOUSOBS_ID,,
4
PLOT_ID,locationID,,
5
PROJECT_ID,projectID,,
6
authorObsCode,authorEventCode,,
7
obsStartDate,startDate,,
8
obsEndDate,endDate,,
9
dateAccuracy,*dateAccuracy,,
10
dateEntered,*dateEntered,,
11
COVERMETHOD_ID,*COVERMETHOD_ID,,
12
coverDispersion,*coverDispersion,,
13
autoTaxonCover,*autoTaxonCover,,
14
STRATUMMETHOD_ID,*STRATUMMETHOD_ID,,
15
methodNarrative,samplingProtocol,,
16
taxonObservationArea,*taxonObservationArea,,
17
stemSizeLimit,*stemSizeLimit,,
18
stemObservationArea,*stemObservationArea,,
19
stemSampleMethod,*stemSampleMethod,,
20
originalData,*originalData,,
21
effortLevel,*effortLevel,,
22
plotValidationLevel,*plotValidationLevel,,
23
floristicQuality,*floristicQuality,,
24
bryophyteQuality,*bryophyteQuality,,
25
lichenQuality,*lichenQuality,,
26
observationNarrative,*observationNarrative,,
27
landscapeNarrative,*landscapeNarrative,,
28
homogeneity,*homogeneity,,
29
phenologicAspect,*phenologicAspect,,
30
representativeness,*representativeness,,
31
standMaturity,*standMaturity,,
32
successionalStatus,*successionalStatus,,
33
basalArea,*basalArea,,
34
hydrologicRegime,*hydrologicRegime,,
35
soilMoistureRegime,*soilMoistureRegime,,
36
soilDrainage,*soilDrainage,,
37
waterSalinity,*waterSalinity,,
38
waterDepth,*waterDepth,,
39
shoreDistance,*shoreDistance,,
40
soilDepth,*soilDepth,,
41
organicDepth,*organicDepth,,
42
SOILTAXON_ID,*SOILTAXON_ID,,
43
soilTaxonSrc,*soilTaxonSrc,,
44
soilTaxonComplex,*soilTaxonComplex,,
45
soilMapUnit,*soilMapUnit,,
46
percentBedRock,*percentBedRock,,
47
percentRockGravel,*percentRockGravel,,
48
percentWood,*percentWood,,
49
percentLitter,*percentLitter,,
50
percentBareSoil,*percentBareSoil,,
51
percentWater,*percentWater,,
52
percentOther,*percentOther,,
53
nameOther,*nameOther,,
54
treeHt,*treeHt,,
55
shrubHt,*shrubHt,,
56
fieldHt,*fieldHt,,
57
nonvascularHt,*nonvascularHt,,
58
submergedHt,*submergedHt,,
59
treeCover,*treeCover,,
60
shrubCover,*shrubCover,,
61
fieldCover,*fieldCover,,
62
nonvascularCover,*nonvascularCover,,
63
floatingCover,*floatingCover,,
64
submergedCover,*submergedCover,,
65
dominantStratum,*dominantStratum,,
66
growthform1Type,*growthform1Type,,
67
growthform2Type,*growthform2Type,,
68
growthform3Type,*growthform3Type,,
69
growthform1Cover,*growthform1Cover,,
70
growthform2Cover,*growthform2Cover,,
71
growthform3Cover,*growthform3Cover,,
72
totalCover,*totalCover,,
73
accessionCode,*accessionCode,,
74
notesPublic,*notesPublic,,
75
notesMgt,*notesMgt,,
76
revisions,*revisions,,
77
cust_cvs_CowardinSystem,*cust_cvs_CowardinSystem,,
78
cust_cvs_mcnab_LFI_asp,*cust_cvs_mcnab_LFI_asp,,
79
cust_cvs_mcnab_LFI_45,*cust_cvs_mcnab_LFI_45,,
80
cust_cvs_mcnab_LFI_90,*cust_cvs_mcnab_LFI_90,,
81
cust_cvs_mcnab_LFI_135,*cust_cvs_mcnab_LFI_135,,
82
cust_cvs_mcnab_LFI_180,*cust_cvs_mcnab_LFI_180,,
83
cust_cvs_mcnab_LFI_225,*cust_cvs_mcnab_LFI_225,,
84
cust_cvs_mcnab_LFI_270,*cust_cvs_mcnab_LFI_270,,
85
cust_cvs_mcnab_LFI_315,*cust_cvs_mcnab_LFI_315,,
86
cust_cvs_mcnab_TSI_asp,*cust_cvs_mcnab_TSI_asp,,
87
cust_cvs_mcnab_TSI_45,*cust_cvs_mcnab_TSI_45,,
88
cust_cvs_mcnab_TSI_90,*cust_cvs_mcnab_TSI_90,,
89
cust_cvs_mcnab_TSI_135,*cust_cvs_mcnab_TSI_135,,
90
cust_cvs_mcnab_TSI_180,*cust_cvs_mcnab_TSI_180,,
91
cust_cvs_mcnab_TSI_225,*cust_cvs_mcnab_TSI_225,,
92
cust_cvs_mcnab_TSI_270,*cust_cvs_mcnab_TSI_270,,
93
cust_cvs_mcnab_TSI_315,*cust_cvs_mcnab_TSI_315,,
94
cust_cvs_mcnab_LFI,*cust_cvs_mcnab_LFI,,
95
cust_cvs_mcnab_TSI,*cust_cvs_mcnab_TSI,,
96
cust_cvs_LeafType,*cust_cvs_LeafType,,
97
cust_cvs_LeafPhenology,*cust_cvs_LeafPhenology,,
98
cust_cvs_CanopyHeight,*cust_cvs_CanopyHeight,,
99
cust_cvs_compassType,*cust_cvs_compassType,,
100
cust_cvs_LocationSource,*cust_cvs_LocationSource,,
101
cust_cvs_GPSLocationX,*cust_cvs_GPSLocationX,,
102
cust_cvs_GPSLocationY,*cust_cvs_GPSLocationY,,
103
cust_cvs_Ownership,*cust_cvs_Ownership,,
104
cust_cvs_taxaRichness,*cust_cvs_taxaRichness,,
105
cust_cvs_lengthSoilProbe,*cust_cvs_lengthSoilProbe,,
106
cust_cvs_percentHistosol,*cust_cvs_percentHistosol,,
107
cust_cvs_percentBedrock,*cust_cvs_percentBedrock,,
108
cust_cvs_percentBoulder,*cust_cvs_percentBoulder,,
109
cust_cvs_percentGravelCobble,*cust_cvs_percentGravelCobble,,
110
cust_cvs_percentMineralSoil,*cust_cvs_percentMineralSoil,,
111
cust_cvs_percentCWD,*cust_cvs_percentCWD,,
112
cust_cvs_percentFWD,*cust_cvs_percentFWD,,
113
cust_cvs_percentDuff,*cust_cvs_percentDuff,,
114
cust_cvs_percentLitter,*cust_cvs_percentLitter,,
115
cust_cvs_percentNonVasc,*cust_cvs_percentNonVasc,,
116
cust_cvs_percentWater,*cust_cvs_percentWater,,
117
cust_cvs_percentOther,*cust_cvs_percentOther,,
118
cust_cvs_percentOtherName,*cust_cvs_percentOtherName,,
119
cust_cvs_samplingLevel,*cust_cvs_samplingLevel,,
120
cust_cvs_postDsgPoly,*cust_cvs_postDsgPoly,,
121
cust_cvs_stemsSampled,*cust_cvs_stemsSampled,,
122
cust_cvs_stemSamplingNarrative,*cust_cvs_stemSamplingNarrative,,
123
cust_eep_plotLastPlantedDate,*cust_eep_plotLastPlantedDate,,
124
cust_eep_plotNotSampled,*cust_eep_plotNotSampled,,
125
cust_eep_plotNotSampledReason,*cust_eep_plotNotSampledReason,,
126
entry_ares_herbs,*entry_ares_herbs,,
127
entry_ares_trees,*entry_ares_trees,,
128
entry_currentLandUse,*entry_currentLandUse,,
129
entry_depth,*entry_depth,,
130
entry_elevationUnits,*entry_elevationUnits,,
131
entry_formerLandUse,*entry_formerLandUse,,
132
entry_identificationNarrative,*entry_identificationNarrative,,
133
entry_IntensiveModuleList,*entry_IntensiveModuleList,,
134
entry_moduleSize_Overall,*entry_moduleSize_Overall,,
135
entry_moduleSizeX,*entry_moduleSizeX,,
136
entry_moduleSizeY,*entry_moduleSizeY,,
137
entry_photosTaken,*entry_photosTaken,,
138
entry_physClass,*entry_physClass,,
139
entry_plot_X,*entry_plot_X,,
140
entry_plot_Y,*entry_plot_Y,,
141
entry_soilModulesSampled,*entry_soilModulesSampled,,
142
entry_subsequentObsNum,*entry_subsequentObsNum,,
143
entry_taxonomicAuthority_ID,*entry_taxonomicAuthority_ID,,
144
entry_taxonomicAuthorityDate,*entry_taxonomicAuthorityDate,,
145
entry_team,*entry_team,,
146
entry_plot,*entry_plot,,
147
entry_numberOfModules,*entry_numberOfModules,,
148
errors,*errors,,
149
dba_src_ID,*dba_src_ID,,
150
dba_notes,*dba_notes,,
151
numberOfTaxa,*numberOfTaxa,,
152
SOILOBS_ID,*SOILOBS_ID,,
153
soilHorizon,*soilHorizon,,
154
soilDepthTop,*soilDepthTop,,
155
soilDepthBottom,*soilDepthBottom,,
156
soilColor,*soilColor,,
157
soilOrganic,organic_percent,,
158
soilTexture,texture,,
159
soilSand,sand_percent,,
160
soilSilt,silt_percent,,
161
soilClay,clay_percent,,
162
soilCoarse,*soilCoarse,,
163
soilPH,ph,,
164
exchangeCapacity,cationExchangeCapacity_cmol_kg,,
165
baseSaturation,baseSaturation_percent,,
166
soilDescription,*soilDescription,,
167
cust_cvs_collectionName,*cust_cvs_collectionName,,
168
cust_cvs_Lab,*cust_cvs_Lab,,
169
cust_cvs_N,*cust_cvs_N,,
170
cust_cvs_S,*cust_cvs_S,,
171
cust_cvs_P,*cust_cvs_P,,
172
cust_cvs_Ca_ppm,*cust_cvs_Ca_ppm,,
173
cust_cvs_Mg_ppm,*cust_cvs_Mg_ppm,,
174
cust_cvs_K_ppm,*cust_cvs_K_ppm,,
175
cust_cvs_Na_ppm,*cust_cvs_Na_ppm,,
176
cust_cvs_percent_Ca,*cust_cvs_percent_Ca,,
177
cust_cvs_percent_Mg,*cust_cvs_percent_Mg,,
178
cust_cvs_percent_K,*cust_cvs_percent_K,,
179
cust_cvs_percent_Na,*cust_cvs_percent_Na,,
180
cust_cvs_percent_Othr,*cust_cvs_percent_Othr,,
181
cust_cvs_percent_H,*cust_cvs_percent_H,,
182
cust_cvs_B_ppm,*cust_cvs_B_ppm,,
183
cust_cvs_Fe_ppm,*cust_cvs_Fe_ppm,,
184
cust_cvs_Mn_ppm,*cust_cvs_Mn_ppm,,
185
cust_cvs_Cu_ppm,*cust_cvs_Cu_ppm,,
186
cust_cvs_Zn_ppm,*cust_cvs_Zn_ppm,,
187
cust_cvs_Al_ppm,*cust_cvs_Al_ppm,,
188
cust_cvs_Density,*cust_cvs_Density,,
189
cust_cvs_Ca_over_Mg_ppm,*cust_cvs_Ca_over_Mg_ppm,,
190
soilObs_dba_src_ID,*soilObs_dba_src_ID,,
1
CVS,VegCore,Filter,Comments
2
OBSERVATION_ID,eventID,,
3
PREVIOUSOBS_ID,*PREVIOUSOBS_ID,,
4
PLOT_ID,locationID,,
5
PROJECT_ID,projectID,,
6
authorObsCode,authorEventCode,,
7
obsStartDate,startDate,,
8
obsEndDate,endDate,,
9
dateAccuracy,*dateAccuracy,,
10
dateEntered,*dateEntered,,
11
COVERMETHOD_ID,*COVERMETHOD_ID,,
12
coverDispersion,*coverDispersion,,
13
autoTaxonCover,*autoTaxonCover,,
14
STRATUMMETHOD_ID,*STRATUMMETHOD_ID,,
15
methodNarrative,samplingProtocol,,
16
taxonObservationArea,*taxonObservationArea,,
17
stemSizeLimit,*stemSizeLimit,,
18
stemObservationArea,*stemObservationArea,,
19
stemSampleMethod,*stemSampleMethod,,
20
originalData,*originalData,,
21
effortLevel,*effortLevel,,
22
plotValidationLevel,*plotValidationLevel,,
23
floristicQuality,*floristicQuality,,
24
bryophyteQuality,*bryophyteQuality,,
25
lichenQuality,*lichenQuality,,
26
observationNarrative,*observationNarrative,,
27
landscapeNarrative,*landscapeNarrative,,
28
homogeneity,*homogeneity,,
29
phenologicAspect,*phenologicAspect,,
30
representativeness,*representativeness,,
31
standMaturity,*standMaturity,,
32
successionalStatus,*successionalStatus,,
33
basalArea,*basalArea,,
34
hydrologicRegime,*hydrologicRegime,,
35
soilMoistureRegime,*soilMoistureRegime,,
36
soilDrainage,*soilDrainage,,
37
waterSalinity,*waterSalinity,,
38
waterDepth,*waterDepth,,
39
shoreDistance,*shoreDistance,,
40
soilDepth,*soilDepth,,
41
organicDepth,*organicDepth,,
42
SOILTAXON_ID,*SOILTAXON_ID,,
43
soilTaxonSrc,*soilTaxonSrc,,
44
soilTaxonComplex,*soilTaxonComplex,,
45
soilMapUnit,*soilMapUnit,,
46
percentBedRock,*percentBedRock,,
47
percentRockGravel,*percentRockGravel,,
48
percentWood,*percentWood,,
49
percentLitter,*percentLitter,,
50
percentBareSoil,*percentBareSoil,,
51
percentWater,*percentWater,,
52
percentOther,*percentOther,,
53
nameOther,*nameOther,,
54
treeHt,*treeHt,,
55
shrubHt,*shrubHt,,
56
fieldHt,*fieldHt,,
57
nonvascularHt,*nonvascularHt,,
58
submergedHt,*submergedHt,,
59
treeCover,*treeCover,,
60
shrubCover,*shrubCover,,
61
fieldCover,*fieldCover,,
62
nonvascularCover,*nonvascularCover,,
63
floatingCover,*floatingCover,,
64
submergedCover,*submergedCover,,
65
dominantStratum,*dominantStratum,,
66
growthform1Type,*growthform1Type,,
67
growthform2Type,*growthform2Type,,
68
growthform3Type,*growthform3Type,,
69
growthform1Cover,*growthform1Cover,,
70
growthform2Cover,*growthform2Cover,,
71
growthform3Cover,*growthform3Cover,,
72
totalCover,*totalCover,,
73
accessionCode,*accessionCode,,
74
notesPublic,*notesPublic,,
75
notesMgt,*notesMgt,,
76
revisions,*revisions,,
77
cust_cvs_CowardinSystem,*cust_cvs_CowardinSystem,,
78
cust_cvs_mcnab_LFI_asp,*cust_cvs_mcnab_LFI_asp,,
79
cust_cvs_mcnab_LFI_45,*cust_cvs_mcnab_LFI_45,,
80
cust_cvs_mcnab_LFI_90,*cust_cvs_mcnab_LFI_90,,
81
cust_cvs_mcnab_LFI_135,*cust_cvs_mcnab_LFI_135,,
82
cust_cvs_mcnab_LFI_180,*cust_cvs_mcnab_LFI_180,,
83
cust_cvs_mcnab_LFI_225,*cust_cvs_mcnab_LFI_225,,
84
cust_cvs_mcnab_LFI_270,*cust_cvs_mcnab_LFI_270,,
85
cust_cvs_mcnab_LFI_315,*cust_cvs_mcnab_LFI_315,,
86
cust_cvs_mcnab_TSI_asp,*cust_cvs_mcnab_TSI_asp,,
87
cust_cvs_mcnab_TSI_45,*cust_cvs_mcnab_TSI_45,,
88
cust_cvs_mcnab_TSI_90,*cust_cvs_mcnab_TSI_90,,
89
cust_cvs_mcnab_TSI_135,*cust_cvs_mcnab_TSI_135,,
90
cust_cvs_mcnab_TSI_180,*cust_cvs_mcnab_TSI_180,,
91
cust_cvs_mcnab_TSI_225,*cust_cvs_mcnab_TSI_225,,
92
cust_cvs_mcnab_TSI_270,*cust_cvs_mcnab_TSI_270,,
93
cust_cvs_mcnab_TSI_315,*cust_cvs_mcnab_TSI_315,,
94
cust_cvs_mcnab_LFI,*cust_cvs_mcnab_LFI,,
95
cust_cvs_mcnab_TSI,*cust_cvs_mcnab_TSI,,
96
cust_cvs_LeafType,*cust_cvs_LeafType,,
97
cust_cvs_LeafPhenology,*cust_cvs_LeafPhenology,,
98
cust_cvs_CanopyHeight,*cust_cvs_CanopyHeight,,
99
cust_cvs_compassType,*cust_cvs_compassType,,
100
cust_cvs_LocationSource,*cust_cvs_LocationSource,,
101
cust_cvs_GPSLocationX,*cust_cvs_GPSLocationX,,
102
cust_cvs_GPSLocationY,*cust_cvs_GPSLocationY,,
103
cust_cvs_Ownership,*cust_cvs_Ownership,,
104
cust_cvs_taxaRichness,*cust_cvs_taxaRichness,,
105
cust_cvs_lengthSoilProbe,*cust_cvs_lengthSoilProbe,,
106
cust_cvs_percentHistosol,*cust_cvs_percentHistosol,,
107
cust_cvs_percentBedrock,*cust_cvs_percentBedrock,,
108
cust_cvs_percentBoulder,*cust_cvs_percentBoulder,,
109
cust_cvs_percentGravelCobble,*cust_cvs_percentGravelCobble,,
110
cust_cvs_percentMineralSoil,*cust_cvs_percentMineralSoil,,
111
cust_cvs_percentCWD,*cust_cvs_percentCWD,,
112
cust_cvs_percentFWD,*cust_cvs_percentFWD,,
113
cust_cvs_percentDuff,*cust_cvs_percentDuff,,
114
cust_cvs_percentLitter,*cust_cvs_percentLitter,,
115
cust_cvs_percentNonVasc,*cust_cvs_percentNonVasc,,
116
cust_cvs_percentWater,*cust_cvs_percentWater,,
117
cust_cvs_percentOther,*cust_cvs_percentOther,,
118
cust_cvs_percentOtherName,*cust_cvs_percentOtherName,,
119
cust_cvs_samplingLevel,*cust_cvs_samplingLevel,,
120
cust_cvs_postDsgPoly,*cust_cvs_postDsgPoly,,
121
cust_cvs_stemsSampled,*cust_cvs_stemsSampled,,
122
cust_cvs_stemSamplingNarrative,*cust_cvs_stemSamplingNarrative,,
123
cust_eep_plotLastPlantedDate,*cust_eep_plotLastPlantedDate,,
124
cust_eep_plotNotSampled,*cust_eep_plotNotSampled,,
125
cust_eep_plotNotSampledReason,*cust_eep_plotNotSampledReason,,
126
entry_ares_herbs,*entry_ares_herbs,,
127
entry_ares_trees,*entry_ares_trees,,
128
entry_currentLandUse,*entry_currentLandUse,,
129
entry_depth,*entry_depth,,
130
entry_elevationUnits,*entry_elevationUnits,,
131
entry_formerLandUse,*entry_formerLandUse,,
132
entry_identificationNarrative,*entry_identificationNarrative,,
133
entry_IntensiveModuleList,*entry_IntensiveModuleList,,
134
entry_moduleSize_Overall,*entry_moduleSize_Overall,,
135
entry_moduleSizeX,*entry_moduleSizeX,,
136
entry_moduleSizeY,*entry_moduleSizeY,,
137
entry_photosTaken,*entry_photosTaken,,
138
entry_physClass,*entry_physClass,,
139
entry_plot_X,*entry_plot_X,,
140
entry_plot_Y,*entry_plot_Y,,
141
entry_soilModulesSampled,*entry_soilModulesSampled,,
142
entry_subsequentObsNum,*entry_subsequentObsNum,,
143
entry_taxonomicAuthority_ID,*entry_taxonomicAuthority_ID,,
144
entry_taxonomicAuthorityDate,*entry_taxonomicAuthorityDate,,
145
entry_team,*entry_team,,
146
entry_plot,*entry_plot,,
147
entry_numberOfModules,*entry_numberOfModules,,
148
errors,*errors,,
149
dba_src_ID,*dba_src_ID,,
150
dba_notes,*dba_notes,,
151
numberOfTaxa,*numberOfTaxa,,
152
SOILOBS_ID,*SOILOBS_ID,,
153
soilHorizon,*soilHorizon,,
154
soilDepthTop,*soilDepthTop,,
155
soilDepthBottom,*soilDepthBottom,,
156
soilColor,*soilColor,,
157
soilOrganic,organic_percent,,
158
soilTexture,texture,,
159
soilSand,sand_percent,,
160
soilSilt,silt_percent,,
161
soilClay,clay_percent,,
162
soilCoarse,*soilCoarse,,
163
soilPH,ph,,
164
exchangeCapacity,cationExchangeCapacity_cmol_kg,,
165
baseSaturation,baseSaturation_percent,,
166
soilDescription,*soilDescription,,
167
cust_cvs_collectionName,*cust_cvs_collectionName,,
168
cust_cvs_Lab,*cust_cvs_Lab,,
169
cust_cvs_N,*cust_cvs_N,,
170
cust_cvs_S,*cust_cvs_S,,
171
cust_cvs_P,*cust_cvs_P,,
172
cust_cvs_Ca_ppm,*cust_cvs_Ca_ppm,,
173
cust_cvs_Mg_ppm,*cust_cvs_Mg_ppm,,
174
cust_cvs_K_ppm,*cust_cvs_K_ppm,,
175
cust_cvs_Na_ppm,*cust_cvs_Na_ppm,,
176
cust_cvs_percent_Ca,*cust_cvs_percent_Ca,,
177
cust_cvs_percent_Mg,*cust_cvs_percent_Mg,,
178
cust_cvs_percent_K,*cust_cvs_percent_K,,
179
cust_cvs_percent_Na,*cust_cvs_percent_Na,,
180
cust_cvs_percent_Othr,*cust_cvs_percent_Othr,,
181
cust_cvs_percent_H,*cust_cvs_percent_H,,
182
cust_cvs_B_ppm,*cust_cvs_B_ppm,,
183
cust_cvs_Fe_ppm,*cust_cvs_Fe_ppm,,
184
cust_cvs_Mn_ppm,*cust_cvs_Mn_ppm,,
185
cust_cvs_Cu_ppm,*cust_cvs_Cu_ppm,,
186
cust_cvs_Zn_ppm,*cust_cvs_Zn_ppm,,
187
cust_cvs_Al_ppm,*cust_cvs_Al_ppm,,
188
cust_cvs_Density,*cust_cvs_Density,,
189
cust_cvs_Ca_over_Mg_ppm,*cust_cvs_Ca_over_Mg_ppm,,
190
soilObs_dba_src_ID,*soilObs_dba_src_ID,,

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