Project

General

Profile

« Previous | Next » 

Revision 8176

Added by Aaron Marcuse-Kubitza almost 12 years ago

inputs/input.Makefile: %/.map.csv.last_cleanup: Run fix_line_endings after canon/translate to standardize Python's \r\n line endings back to \n. This prevents issues with mixed line endings because LibreOffice (and probably Excel) treat all cell-internal line endings as \n but row line endings as whatever the file had, while text editors like jEdit translate all line endings to whatever the autodetected line ending is. (This creates spurious line ending diffs when a map spreadsheet containing multiline cells is edited in a text editor.)

View differences:

map.csv
1 
SpeciesLink,VegCore,Filter,Comments
2 
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,,
3 
dwc_dwcore_DateLastModified,modified,,
4 
dwc_dwcore_BasisOfRecord,basisOfRecord,,
5 
dwc_dwcore_InstitutionCode,specimenHolderInstitutions,,
6 
dwc_dwcore_CollectionCode,collection,,
7 
dwc_dwcore_CatalogNumber,accessionNumber,,
8 
dwc_dwcore_Remarks,occurrenceRemarks,/_alt/3,
9 
dwc_dwcore_ScientificName,taxonName,,
10 
dwc_dwcore_Kingdom,kingdom,,
11 
dwc_dwcore_Phylum,phylum,,
12 
dwc_dwcore_Class,class,,
13 
dwc_dwcore_Order,order,,
14 
dwc_dwcore_Family,family,,
15 
dwc_dwcore_Genus,genus,,
16 
dwc_dwcore_SpecificEpithet,specificEpithet,,
17 
dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,,
18 
dwc_dwcore_AuthorYearOfScientificName,scientificNameAuthorship,/_alt/3,
19 
dwc_dwcore_Continent,continent,,
20 
dwc_dwcore_Country,country,,
21 
dwc_dwcore_StateProvince,stateProvince,,
22 
dwc_dwcore_County,county,,
23 
dwc_dwcore_Locality,locality,,
24 
dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,,
25 
dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,,
26 
dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,,
27 
dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,,
28 
dwc_dwcore_DayOfYear,day,/_alt/2,
29 
dwc_dwcore_Collector,recordedBy,,
30 
dwc_dwcore_Sex,sex,,
31 
dwc_curatorial_IdentifiedBy,identifiedBy,,
32 
dwc_curatorial_CollectorNumber,collectorNumber,/_alt/3,
1 
SpeciesLink,VegCore,Filter,Comments
2 
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,,
3 
dwc_dwcore_DateLastModified,modified,,
4 
dwc_dwcore_BasisOfRecord,basisOfRecord,,
5 
dwc_dwcore_InstitutionCode,specimenHolderInstitutions,,
6 
dwc_dwcore_CollectionCode,collection,,
7 
dwc_dwcore_CatalogNumber,accessionNumber,,
8 
dwc_dwcore_Remarks,occurrenceRemarks,/_alt/3,
9 
dwc_dwcore_ScientificName,taxonName,,
10 
dwc_dwcore_Kingdom,kingdom,,
11 
dwc_dwcore_Phylum,phylum,,
12 
dwc_dwcore_Class,class,,
13 
dwc_dwcore_Order,order,,
14 
dwc_dwcore_Family,family,,
15 
dwc_dwcore_Genus,genus,,
16 
dwc_dwcore_SpecificEpithet,specificEpithet,,
17 
dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,,
18 
dwc_dwcore_AuthorYearOfScientificName,scientificNameAuthorship,/_alt/3,
19 
dwc_dwcore_Continent,continent,,
20 
dwc_dwcore_Country,country,,
21 
dwc_dwcore_StateProvince,stateProvince,,
22 
dwc_dwcore_County,county,,
23 
dwc_dwcore_Locality,locality,,
24 
dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,,
25 
dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,,
26 
dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,,
27 
dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,,
28 
dwc_dwcore_DayOfYear,day,/_alt/2,
29 
dwc_dwcore_Collector,recordedBy,,
30 
dwc_dwcore_Sex,sex,,
31 
dwc_curatorial_IdentifiedBy,identifiedBy,,
32 
dwc_curatorial_CollectorNumber,collectorNumber,/_alt/3,
33 33 
dwc_curatorial_FieldNumber,collectorNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
34 34 
-----
35 35 
SELECT count(*) FROM ""SpeciesLink"".specimens
36 36 
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
37 
-----"
38 
dwc_curatorial_TypeStatus,typeStatus,,
39 
dwc_curatorial_IndividualCount,individualCount,,
40 
dwc_geospatial_DecimalLatitude,decimalLatitude,,
41 
dwc_geospatial_DecimalLongitude,decimalLongitude,,
42 
dwc_geospatial_VerbatimLatitude,verbatimLatitude,,Contains a mix of DMS and other verbatim coordinates
43 
dwc_geospatial_VerbatimLongitude,verbatimLongitude,,Contains a mix of DMS and other verbatim coordinates
44 
http__purl_org_dc_terms_modified,modified,,
45 
dwc_terms_collectionID,collectionURL,,
46 
dwc_terms_institutionCode,specimenHolderInstitutions,,
47 
dwc_terms_collectionCode,collection,,
48 
dwc_terms_basisOfRecord,basisOfRecord,,
49 
dwc_terms_identifiedBy,identifiedBy,,
50 
dwc_terms_dateIdentified,dateIdentified,,
51 
dwc_terms_typeStatus,typeStatus,,
52 
dwc_terms_catalogNumber,accessionNumber,,
53 
dwc_terms_occurrenceRemarks,occurrenceRemarks,/_alt/1,
54 
dwc_terms_recordNumber,collectorNumber,/_alt/1,
55 
dwc_terms_recordedBy,recordedBy,,
56 
dwc_terms_individualCount,individualCount,,
57 
dwc_terms_sex,sex,,
58 
dwc_terms_preparations,preparations,,
59 
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,,
60 
dwc_terms_eventTime,eventTime,,
61 
dwc_terms_startDayOfYear,startDayOfYear,,
62 
dwc_terms_endDayOfYear,endDayOfYear,,
63 
dwc_terms_year,year,,
64 
dwc_terms_month,month,,
65 
dwc_terms_day,day,,
37 
-----"
38 
dwc_curatorial_TypeStatus,typeStatus,,
39 
dwc_curatorial_IndividualCount,individualCount,,
40 
dwc_geospatial_DecimalLatitude,decimalLatitude,,
41 
dwc_geospatial_DecimalLongitude,decimalLongitude,,
42 
dwc_geospatial_VerbatimLatitude,verbatimLatitude,,Contains a mix of DMS and other verbatim coordinates
43 
dwc_geospatial_VerbatimLongitude,verbatimLongitude,,Contains a mix of DMS and other verbatim coordinates
44 
http__purl_org_dc_terms_modified,modified,,
45 
dwc_terms_collectionID,collectionURL,,
46 
dwc_terms_institutionCode,specimenHolderInstitutions,,
47 
dwc_terms_collectionCode,collection,,
48 
dwc_terms_basisOfRecord,basisOfRecord,,
49 
dwc_terms_identifiedBy,identifiedBy,,
50 
dwc_terms_dateIdentified,dateIdentified,,
51 
dwc_terms_typeStatus,typeStatus,,
52 
dwc_terms_catalogNumber,accessionNumber,,
53 
dwc_terms_occurrenceRemarks,occurrenceRemarks,/_alt/1,
54 
dwc_terms_recordNumber,collectorNumber,/_alt/1,
55 
dwc_terms_recordedBy,recordedBy,,
56 
dwc_terms_individualCount,individualCount,,
57 
dwc_terms_sex,sex,,
58 
dwc_terms_preparations,preparations,,
59 
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,,
60 
dwc_terms_eventTime,eventTime,,
61 
dwc_terms_startDayOfYear,startDayOfYear,,
62 
dwc_terms_endDayOfYear,endDayOfYear,,
63 
dwc_terms_year,year,,
64 
dwc_terms_month,month,,
65 
dwc_terms_day,day,,
66 66 
dwc_terms_fieldNumber,collectorNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
67 67 
-----
68 68 
SELECT count(*) FROM ""SpeciesLink"".specimens
69 69 
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
70 
-----"
71 
dwc_terms_continent,continent,,
72 
dwc_terms_country,country,,
73 
dwc_terms_stateProvince,stateProvince,,
74 
dwc_terms_county,county,,
75 
dwc_terms_locality,locality,,
76 
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,,
77 
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,,
78 
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,,
79 
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,,
80 
dwc_terms_verbatimLatitude,verbatimLatitude,,
81 
dwc_terms_verbatimLongitude,verbatimLongitude,,
82 
dwc_terms_decimalLatitude,decimalLatitude,,
83 
dwc_terms_decimalLongitude,decimalLongitude,,
84 
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,/_alt/1,
85 
dwc_terms_scientificName,taxonName,,
86 
dwc_terms_kingdom,kingdom,,
87 
dwc_terms_phylum,phylum,,
88 
dwc_terms_class,class,,
89 
dwc_terms_order,order,,
90 
dwc_terms_family,family,,
91 
dwc_terms_genus,genus,,
92 
dwc_terms_specificEpithet,specificEpithet,,
93 
dwc_terms_infraspecificEpithet,infraspecificEpithet,,
94 
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,/_alt/1,
95 
conceptual_darwin_2003_1_0_DateLastModified,modified,,
96 
conceptual_darwin_2003_1_0_InstitutionCode,specimenHolderInstitutions,,
97 
conceptual_darwin_2003_1_0_CollectionCode,collection,,
98 
conceptual_darwin_2003_1_0_CatalogNumber,accessionNumber,,
99 
conceptual_darwin_2003_1_0_ScientificName,taxonName,,
100 
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,,
101 
conceptual_darwin_2003_1_0_Kingdom,kingdom,,
102 
conceptual_darwin_2003_1_0_Phylum,phylum,,
103 
conceptual_darwin_2003_1_0_Class,class,,
104 
conceptual_darwin_2003_1_0_Order,order,,
105 
conceptual_darwin_2003_1_0_Family,family,,
106 
conceptual_darwin_2003_1_0_Genus,genus,,
107 
conceptual_darwin_2003_1_0_Species,specificEpithet,,
108 
conceptual_darwin_2003_1_0_Subspecies,subspecies,,
109 
conceptual_darwin_2003_1_0_ScientificNameAuthor,scientificNameAuthorship,/_alt/2,
110 
conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,,
111 
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,,
112 
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,,
113 
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,,
114 
conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,
115 
conceptual_darwin_2003_1_0_CollectorNumber,collectorNumber,/_alt/3,
70 
-----"
71 
dwc_terms_continent,continent,,
72 
dwc_terms_country,country,,
73 
dwc_terms_stateProvince,stateProvince,,
74 
dwc_terms_county,county,,
75 
dwc_terms_locality,locality,,
76 
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,,
77 
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,,
78 
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,,
79 
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,,
80 
dwc_terms_verbatimLatitude,verbatimLatitude,,
81 
dwc_terms_verbatimLongitude,verbatimLongitude,,
82 
dwc_terms_decimalLatitude,decimalLatitude,,
83 
dwc_terms_decimalLongitude,decimalLongitude,,
84 
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,/_alt/1,
85 
dwc_terms_scientificName,taxonName,,
86 
dwc_terms_kingdom,kingdom,,
87 
dwc_terms_phylum,phylum,,
88 
dwc_terms_class,class,,
89 
dwc_terms_order,order,,
90 
dwc_terms_family,family,,
91 
dwc_terms_genus,genus,,
92 
dwc_terms_specificEpithet,specificEpithet,,
93 
dwc_terms_infraspecificEpithet,infraspecificEpithet,,
94 
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,/_alt/1,
95 
conceptual_darwin_2003_1_0_DateLastModified,modified,,
96 
conceptual_darwin_2003_1_0_InstitutionCode,specimenHolderInstitutions,,
97 
conceptual_darwin_2003_1_0_CollectionCode,collection,,
98 
conceptual_darwin_2003_1_0_CatalogNumber,accessionNumber,,
99 
conceptual_darwin_2003_1_0_ScientificName,taxonName,,
100 
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,,
101 
conceptual_darwin_2003_1_0_Kingdom,kingdom,,
102 
conceptual_darwin_2003_1_0_Phylum,phylum,,
103 
conceptual_darwin_2003_1_0_Class,class,,
104 
conceptual_darwin_2003_1_0_Order,order,,
105 
conceptual_darwin_2003_1_0_Family,family,,
106 
conceptual_darwin_2003_1_0_Genus,genus,,
107 
conceptual_darwin_2003_1_0_Species,specificEpithet,,
108 
conceptual_darwin_2003_1_0_Subspecies,subspecies,,
109 
conceptual_darwin_2003_1_0_ScientificNameAuthor,scientificNameAuthorship,/_alt/2,
110 
conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,,
111 
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,,
112 
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,,
113 
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,,
114 
conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,
115 
conceptual_darwin_2003_1_0_CollectorNumber,collectorNumber,/_alt/3,
116 116 
conceptual_darwin_2003_1_0_FieldNumber,collectorNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
117 117 
-----
118 118 
SELECT count(*) FROM ""SpeciesLink"".specimens
119 119 
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
120 
-----"
121 
conceptual_darwin_2003_1_0_Collector,recordedBy,,
122 
conceptual_darwin_2003_1_0_YearCollected,yearCollected,,
123 
conceptual_darwin_2003_1_0_MonthCollected,monthCollected,,
124 
conceptual_darwin_2003_1_0_DayCollected,dayCollected,,
125 
conceptual_darwin_2003_1_0_JulianDay,day,/_alt/1,
126 
conceptual_darwin_2003_1_0_TimeOfDay,eventTime,,
127 
conceptual_darwin_2003_1_0_ContinentOcean,continent,,
128 
conceptual_darwin_2003_1_0_Country,country,,
129 
conceptual_darwin_2003_1_0_StateProvince,stateProvince,,
130 
conceptual_darwin_2003_1_0_County,county,,
131 
conceptual_darwin_2003_1_0_Locality,locality,,
132 
conceptual_darwin_2003_1_0_Longitude,decimalLongitude,,
133 
conceptual_darwin_2003_1_0_Latitude,decimalLatitude,,
134 
conceptual_darwin_2003_1_0_CoordinatePrecision,coordinateUncertaintyInMeters,/_alt/2,Assuming units based on the range and precision of values
135 
conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,,
136 
conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,,
137 
conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,,
138 
conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,,
139 
conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,,
140 
conceptual_darwin_2003_1_0_Sex,sex,,
141 
conceptual_darwin_2003_1_0_PreparationType,preparations,,
142 
conceptual_darwin_2003_1_0_IndividualCount,individualCount,,
143 
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,
144 
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,
145 
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,
146 
conceptual_darwin_2003_1_0_Notes,occurrenceRemarks,/_alt/2,
120 
-----"
121 
conceptual_darwin_2003_1_0_Collector,recordedBy,,
122 
conceptual_darwin_2003_1_0_YearCollected,yearCollected,,
123 
conceptual_darwin_2003_1_0_MonthCollected,monthCollected,,
124 
conceptual_darwin_2003_1_0_DayCollected,dayCollected,,
125 
conceptual_darwin_2003_1_0_JulianDay,day,/_alt/1,
126 
conceptual_darwin_2003_1_0_TimeOfDay,eventTime,,
127 
conceptual_darwin_2003_1_0_ContinentOcean,continent,,
128 
conceptual_darwin_2003_1_0_Country,country,,
129 
conceptual_darwin_2003_1_0_StateProvince,stateProvince,,
130 
conceptual_darwin_2003_1_0_County,county,,
131 
conceptual_darwin_2003_1_0_Locality,locality,,
132 
conceptual_darwin_2003_1_0_Longitude,decimalLongitude,,
133 
conceptual_darwin_2003_1_0_Latitude,decimalLatitude,,
134 
conceptual_darwin_2003_1_0_CoordinatePrecision,coordinateUncertaintyInMeters,/_alt/2,Assuming units based on the range and precision of values
135 
conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,,
136 
conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,,
137 
conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,,
138 
conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,,
139 
conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,,
140 
conceptual_darwin_2003_1_0_Sex,sex,,
141 
conceptual_darwin_2003_1_0_PreparationType,preparations,,
142 
conceptual_darwin_2003_1_0_IndividualCount,individualCount,,
143 
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,
144 
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,
145 
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,
146 
conceptual_darwin_2003_1_0_Notes,occurrenceRemarks,/_alt/2,

Also available in: Unified diff