Revision 8206
Added by Aaron Marcuse-Kubitza over 11 years ago
inputs/TEAM/VL/VegBIEN.csv | ||
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39 | 39 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
40 | 40 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
41 | 41 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
42 |
Subplot Number,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
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43 |
Subplot Number,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
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42 |
Subplot Number,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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43 |
Subplot Number,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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44 | 44 |
Comments,,** No join mapping for *Comments ** |
45 | 45 |
Condition Codes,,** No join mapping for *Condition Codes ** |
46 | 46 |
Data Level,,** No join mapping for *Data Level ** |
inputs/TEAM/VT/VegBIEN.csv | ||
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39 | 39 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
40 | 40 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
41 | 41 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
42 |
Subplot Number,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
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43 |
Subplot Number,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
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42 |
Subplot Number,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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43 |
Subplot Number,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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44 | 44 |
Comments,,** No join mapping for *Comments ** |
45 | 45 |
Condition Codes,,** No join mapping for *Condition Codes ** |
46 | 46 |
Data Level,,** No join mapping for *Data Level ** |
inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
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124 | 124 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
125 | 125 |
coll_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_alt/1",Brad: Map instead as for voucher_string |
126 | 126 |
SourceVoucher,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
127 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
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128 |
Line,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
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129 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
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130 |
Line,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
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127 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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128 |
Line,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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129 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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130 |
Line,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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131 | 131 |
GenAuth,,** No join mapping for *GenAuth ** |
132 | 132 |
IsMorpho,,** No join mapping for *IsMorpho ** |
133 | 133 |
OrigAuth,,** No join mapping for *OrigAuth ** |
inputs/SALVIAS/plotMetadata_/VegBIEN.csv | ||
---|---|---|
66 | 66 |
PolDiv1,/location/locationplace/*_id/place/stateprovince,Brad: No; pol1=stateProvince |
67 | 67 |
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value, |
68 | 68 |
slope_gradient,/location/slopegradient_fraction/_alt/1, |
69 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
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70 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
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69 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
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70 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
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71 | 71 |
ElevSource,,** No join mapping for *ElevSource ** |
72 | 72 |
MethodCode,,** No non-empty join mapping for OMIT ** Not globally unique after lookup_MethodCode_Description is combined with PlotMethod |
73 | 73 |
PrecipSource,,** No join mapping for *PrecipSource ** |
inputs/Madidi/IndividualObservation/VegBIEN.csv | ||
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66 | 66 |
FieldNameFullName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonname, |
67 | 67 |
SpecimenID,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
68 | 68 |
CollectionNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then", |
69 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
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70 |
Sequence,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
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71 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
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72 |
Sequence,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
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69 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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70 |
Sequence,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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71 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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72 |
Sequence,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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73 | 73 |
SubplotX,/location/sublocationxposition_m, |
74 | 74 |
SubplotY,/location/sublocationyposition_m, |
75 | 75 |
AreaRachilla1,,** No non-empty join mapping for UNUSED ** |
inputs/Madidi/LocationObservation/VegBIEN.csv | ||
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46 | 46 |
LatitudeDecDeg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
47 | 47 |
LongitudeDecDeg,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
48 | 48 |
Slope,/location/slopegradient_fraction/_alt/1, |
49 |
PlotName,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists/_first/1", |
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50 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists/_first/2", |
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51 |
PlotName,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1/_first/1", |
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52 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1/_first/2", |
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49 |
PlotName,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists/_first/1",
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50 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists/_first/2",
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51 |
PlotName,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1/_first/1",
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52 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1/_first/2",
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53 | 53 |
Collaborators,,** No join mapping for *Collaborators ** |
54 | 54 |
Collaborators (OLD),,** No join mapping for *Collaborators (OLD) ** |
55 | 55 |
Funding agency,,** No join mapping for *Funding agency ** |
inputs/Madidi/Location/VegBIEN.csv | ||
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25 | 25 |
LowerName,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2, |
26 | 26 |
UpperName,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2, |
27 | 27 |
UpperName,/location/locationplace/*_id/place/stateprovince, |
28 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
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29 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
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28 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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29 |
PlotID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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30 | 30 |
FirstSurveyDate,,** No join mapping for *FirstSurveyDate ** |
31 | 31 |
OrientationXDegrees,,** No join mapping for *OrientationXDegrees ** |
32 | 32 |
OrientationYDegrees,,** No join mapping for *OrientationYDegrees ** |
inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
---|---|---|
127 | 127 |
det_type,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
128 | 128 |
coll_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_alt/1",Brad: Map instead as for voucher_string |
129 | 129 |
voucher_string,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/collectionnumber/_if[@name=""if indirect voucher""]/then/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
130 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
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131 |
subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
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132 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
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133 |
subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
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130 |
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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131 |
subplot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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132 |
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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133 |
subplot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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134 | 134 |
collector_code,,** No join mapping for *collector_code ** Brad: OMIT |
135 | 135 |
comments,,** No join mapping for *comments ** Brad: OMIT |
136 | 136 |
fam_status,,** No join mapping for *fam_status ** Brad: OMIT. This will be determined later by using TNRS. |
inputs/SALVIAS-CSV/Plot/VegBIEN.csv | ||
---|---|---|
57 | 57 |
pol1,/location/locationplace/*_id/place/stateprovince,Brad: No; pol1=stateProvince |
58 | 58 |
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value, |
59 | 59 |
slope_gradient,/location/slopegradient_fraction/_alt/1, |
60 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
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61 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata." |
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60 |
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
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61 |
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
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62 | 62 |
recensused,,"** No join mapping for *recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values" |
inputs/CVS/observation_/VegBIEN.csv | ||
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29 | 29 |
OBSERVATION_ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
30 | 30 |
PLOT_ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
31 | 31 |
authorObsCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
32 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
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33 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
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32 |
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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33 |
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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34 | 34 |
COVERMETHOD_ID,,** No join mapping for *COVERMETHOD_ID ** |
35 | 35 |
PREVIOUSOBS_ID,,** No join mapping for *PREVIOUSOBS_ID ** |
36 | 36 |
SOILOBS_ID,,** No join mapping for *SOILOBS_ID ** |
inputs/CVS/plot_/VegBIEN.csv | ||
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41 | 41 |
slopeGradient,/location/slopegradient_fraction/_alt/1, |
42 | 42 |
minSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/1, |
43 | 43 |
maxSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/2, |
44 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
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45 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
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44 |
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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45 |
PLOT_ID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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46 | 46 |
Geographic Name,,** No join mapping for *Geographic Name ** |
47 | 47 |
REPLACEMENTPLOT_ID,,** No join mapping for *REPLACEMENTPLOT_ID ** |
48 | 48 |
River Basin,,** No join mapping for *River Basin ** |
inputs/FIA/Organism/VegBIEN.csv | ||
---|---|---|
28 | 28 |
County,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2, |
29 | 29 |
StateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2, |
30 | 30 |
StateProvince,/location/locationplace/*_id/place/stateprovince, |
31 |
PlotCD,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
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32 |
PlotCD,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
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31 |
PlotCD,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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32 |
PlotCD,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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33 | 33 |
HOM,,** No join mapping for *HOM ** |
inputs/FIA/FIA_COND_unique/VegBIEN.csv | ||
---|---|---|
15 | 15 |
PLOT,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
16 | 16 |
PLT_CN,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
17 | 17 |
oldgrowth,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_alt/1/_not/value", |
18 |
PLT_CN,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
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19 |
PLT_CN,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
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18 |
PLT_CN,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
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19 |
PLT_CN,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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20 | 20 |
ADFORCD,,** No join mapping for *ADFORCD ** |
21 | 21 |
ALSTK,,** No join mapping for *ALSTK ** |
22 | 22 |
ALSTKCD,,** No join mapping for *ALSTKCD ** |
inputs/NVS/AggregateOccurrence/VegBIEN.csv | ||
---|---|---|
17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
19 | 19 |
Taxon Obs Note,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes, |
20 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
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21 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
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20 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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21 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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22 | 22 |
Category,,** No join mapping for *Category ** |
23 | 23 |
Category Description,,** No join mapping for *Category Description ** |
24 | 24 |
Method Name,,** No join mapping for *Method Name ** |
inputs/NVS/TaxonOccurrence.Understory/VegBIEN.csv | ||
---|---|---|
17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
19 | 19 |
Taxon Obs Note,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes, |
20 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
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21 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
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20 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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21 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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22 | 22 |
Method Name,,** No join mapping for *Method Name ** |
23 | 23 |
Parent Plot Obs ID,,** No join mapping for *Parent Plot Obs ID ** |
24 | 24 |
Sample Method ID,,** No join mapping for *Sample Method ID ** |
inputs/NVS/TaxonOccurrence/VegBIEN.csv | ||
---|---|---|
17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
19 | 19 |
Taxon Obs Note,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes, |
20 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
21 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
20 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
|
|
21 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
|
|
22 | 22 |
Herbivore,,** No join mapping for *Herbivore ** |
23 | 23 |
Method Name,,** No join mapping for *Method Name ** |
24 | 24 |
Severity,,** No join mapping for *Severity ** |
inputs/NVS/StemObservation/VegBIEN.csv | ||
---|---|---|
29 | 29 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
30 | 30 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
31 | 31 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
32 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
33 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
32 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
|
|
33 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
|
|
34 | 34 |
Alive State,,** No join mapping for *Alive State ** |
35 | 35 |
Association,,** No join mapping for *Association ** |
36 | 36 |
Association No,,** No join mapping for *Association No ** |
inputs/NVS/Plot/VegBIEN.csv | ||
---|---|---|
16 | 16 |
Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
17 | 17 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
18 | 18 |
Slope,/location/slopeaspect_deg/_alt/1/_compass/value, |
19 |
Plot ID,/location/sourceaccessioncode, |
|
20 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
21 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
19 |
Plot ID,/location/sourceaccessioncode/_first/1,
|
|
20 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
|
|
21 |
Sub Plot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
|
|
22 | 22 |
Altitude Units,,** No join mapping for *Altitude Units ** |
23 | 23 |
Area Units,,** No join mapping for *Area Units ** |
24 | 24 |
Aspect,,** No join mapping for *Aspect ** |
inputs/VegBank/observation_/VegBIEN.csv | ||
---|---|---|
29 | 29 |
authorobscode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
30 | 30 |
observation_id,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
31 | 31 |
plot_id,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
32 |
plot_id,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
33 |
plot_id,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
32 |
plot_id,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
33 |
plot_id,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
34 | 34 |
accessioncode,,** No join mapping for *accessioncode ** |
35 | 35 |
autotaxoncover,,** No join mapping for *autotaxoncover ** |
36 | 36 |
basalarea,,** No join mapping for *basalarea ** |
inputs/VegBank/plot_/VegBIEN.csv | ||
---|---|---|
39 | 39 |
slopegradient,/location/slopegradient_fraction/_alt/1, |
40 | 40 |
minslopegradient,/location/slopegradient_fraction/_alt/2/_avg/1, |
41 | 41 |
maxslopegradient,/location/slopegradient_fraction/_alt/2/_avg/2, |
42 |
plot_id,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
43 |
plot_id,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
42 |
plot_id,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
43 |
plot_id,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
44 | 44 |
Geographic Name,,** No join mapping for *Geographic Name ** |
45 | 45 |
accessioncode,,** No join mapping for *accessioncode ** |
46 | 46 |
authordatum,,** No join mapping for *authordatum ** |
mappings/VegCore-VegBIEN.csv | ||
---|---|---|
381 | 381 |
slopeGradient,/location/slopegradient_fraction/_alt/1, |
382 | 382 |
minSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/1, |
383 | 383 |
maxSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/2, |
384 |
subplotID,/location/sourceaccessioncode, |
|
385 |
locationID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
386 |
subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
387 |
locationID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
388 |
subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
384 |
subplotID,/location/sourceaccessioncode/_first/1,
|
|
385 |
locationID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
|
386 |
subplot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
|
|
387 |
locationID,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
388 |
subplot,"/location/sourceaccessioncode/_first/2/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
|
|
389 | 389 |
subplotX,/location/sublocationxposition_m, |
390 | 390 |
subplotY,/location/sublocationyposition_m, |
391 | 391 |
verbatimElevation,/location/verbatimelevation, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: subplotID,subplot -> location.sourceaccessioncode: Fixed bug where need /_first to handle the case where both subplotID and subplot are provided