/ - Diff - BIEN 3 - NCEAS Projects

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /.phpPgAdmin/[vegbiendev.nceas.ucsb.edu/phppgadmin]/localhost:5432:allow/$0 [discardpath,noescape,last]

www/main/servers/vegbiendev/fs
1		link ../../../..
2	0

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/servers/vegbiendev/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^.*$ db/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /.phpMyAdmin/[nimoy.nceas.ucsb.edu/phpmyadmin]/$0 [discardpath,noescape,last]

www/main/.vegbank
1		link VegBank
2	0

     <?php
     require_once dirname(__FILE__)."/util.php";
     $self_dir = ensure_suffix("/", dirname($_SERVER["SCRIPT_NAME"]));
     # config
     $alias = "j.mp/vegpath#";
     function by_prefix($url, $main_url=null)
+    {
     	if (!isset($main_url)) $main_url = $url;
     	return function($path) use($url, $main_url)
+    	{
     		return $path ? $url.$path : $main_url;
     	};
+    }
     $h_level = 5;
     $root = $_SERVER["SERVER_NAME"] === gethostbyaddr($_SERVER["SERVER_ADDR"])
     	? $alias : $_SERVER["SERVER_NAME"].rm_suffix("/", $self_dir)."?";
     # instead of PATH_INFO, to support the Apache ErrorDocument directive
     $rel_fs_path = rm_prefix($self_dir, $_SERVER["REQUEST_URI"]);
     $path = parse_dot_path($rel_fs_path);
     $ns = strtolower($path->head);
     function add_ns($name, $path_pat, $url_func)
+    {
     	global $root, $h_level, $path, $ns;
     	if (is_string($url_func)) $url_func = by_prefix($url_func);
     	print("<h".$h_level.' id="'.$name.'">'.$root.'<big><a href="http://'.$root
     		.$name.'">'.$name."</a></big><i>".$path_pat."</i></h".$h_level.">\n");
     	if ($ns === strtolower($name)) # found match, so redirect
+    	{
     		header("Location: ".strip_url($url_func($path->tail)));
     		ob_end_flush();
     		exit;
+    	}
+    }
     function custom_separator($url, $sep, $main_url=null)
+    {
     	if (!isset($main_url)) $main_url = $url;
     	return function($path) use($url, $sep, $main_url)
+    	{
     		if ($path === "") return $main_url;
     		$path = parse_dot_path($path);
     		return $url.join_non_empty($sep, array($path->head, $path->tail));
     	};
+    }
     function fragment_override($url, $fragment=null)
+    {
     	return function($path) use($url, $fragment)
+    	{
     		if (!isset($fragment))
+    		{
     			$path = parse_dot_path($path);
     			$fragment = $path->head;
     			$path = $path->tail;
+    		}
     		if ($path !== "") $url .= "?".$path;
     		return $url."#".$fragment;
     	};
+    }
     function phpPgAdmin($url, $table=null)
+    {
     	return function($path) use($url, $table)
+    	{
     		$path = join_non_empty(".", array($table, $path));
     		$path = parse_dot_path($path);
     		$subject = "schema";
     		if ($path->head !== "")
+    		{
     			$url .= "&table=".$path->head;
     			if ($path->tail !== "")
+    			{
     				$url .= "&column=".$path->tail;
     				$subject = "column";
+    			}
     			else $subject = "table";
+    		}
     		$url .= "&subject=".$subject;
     		return $url;
     	};
+    }
     function phpMyAdmin($url, $table=null)
+    {
     	return function($path) use($url, $table)
+    	{
     		$path = join_non_empty(".", array($table, $path));
     		$path = parse_dot_path($path);
     		$target = "db_structure";
     		if ($path->head !== "")
+    		{
     			$url .= "&table=".$path->head;
     			if ($path->tail !== "") $url .= "&column=".$path->tail;
     			$target = "tbl_structure";
+    		}
     		$url .= "&target=".$target.".php";
     		return $url;
     	};
+    }
     ob_start(); // delay output in case there is a redirect
     ?>
     <html>
     	<head>
     		<title>VegPath</title>
     		<link rel="stylesheet" type="text/css" href="/main.css" />
     		<style type="text/css">
     h1 {color: green;}
     		</style>
     		<script type="text/javascript" src="/util.js"></script>
     	</head>
     	<body>
     		<h1>VegPath&nbsp;&nbsp; <small><a href="http://en.wikipedia.org/wiki/PURL">persistent URLs</a> for vegetation resources</small></h1>
     		<div>Supported URL patterns:&nbsp;&nbsp; <small>(elements in <i>italics</i> are optional)</small></div>
     		<p></p>
     <?php
     # add and list URLs
     $Redmine = "https://projects.nceas.ucsb.edu/nceas/projects/bien";
     $Redmine_svn = $Redmine."/repository/raw";
     $nimoy = "http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php";
     function nimoy_db($db) { global $nimoy; return phpMyAdmin($nimoy."?db=".$db); }
     $IH_db = phpMyAdmin($nimoy."?db=bien3_adb", "ih");
     $SALVIAS = "http://salvias.net/Documents/salvias_data_dictionary.html";
     ?>
     		<table border="0" cellspacing="0" cellpadding="0">
     			<tr valign="top">
     				<td nowrap="nowrap"><h2>Terms</h2></td>
     				<td nowrap="nowrap"><h2>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</h2></td>
     				<td nowrap="nowrap"><h2>Data</h2></td>
     			</tr>
     			<tr valign="top">
     				<td nowrap="nowrap">
     <?php
     print("<blockquote>\n");
     print("<h3>Exchange schemas</h3>");
+    {
     	print("<blockquote>\n");
     	add_ns("VegCore", ".term", "https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#");
     	add_ns("DwC", ".term", "http://rs.tdwg.org/dwc/terms/#");
+    	{
     		print("<blockquote>\n"); $h_level++;
     		add_ns("DwC.history", ".term", "http://rs.tdwg.org/dwc/terms/history/#");
     		print("</blockquote>\n"); $h_level--;
+    	}
     	add_ns("TCS", "#/XPath", "http://www.tdwg.org/standards/117/download/#/v101.xsd");
     	add_ns("VegX", "#/XPath", "http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd");
     	print("</blockquote>\n");
+    }
     print("<h3>Aggregators</h3>");
+    {
     	print("<blockquote>\n");
     	add_ns("VegBank", ".table.column", custom_separator("http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&entity=dba_tabledescription&where=where_tablename&wparam=",
     		"#", "http://vegbank.org/get/index/dba_tabledescription"));
     	add_ns("SALVIAS", ".table.column", by_prefix($SALVIAS."#Plot_", $SALVIAS));
+    	{
     		print("<blockquote>\n"); $h_level++;
     		add_ns("SALVIAS.db", ".table.column", nimoy_db("salvias_plots"));
     		add_ns("SALVIAS.users", ".table.column", nimoy_db("salvias_users"));
     		print("</blockquote>\n"); $h_level--;
+    	}
     	add_ns("BIEN2", "", $nimoy."?target=server_databases.php");
+    	{
     		print("<blockquote>\n"); $h_level++;
     		add_ns("BIEN2.web", ".table.column", nimoy_db("bien_web"));
     		add_ns("BIEN2.core", ".table.column", nimoy_db("bien2"));
     		add_ns("BIEN2.geoscrub", ".table.column", nimoy_db("geoscrub"));
     		add_ns("BIEN2.staging", ".table.column", nimoy_db("bien2_staging"));
     		print("</blockquote>\n"); $h_level--;
+    	}
     	add_ns("VegBIEN", ".table.column", phpPgAdmin("http://vegbiendev.nceas.ucsb.edu/phppgadmin/redirect.php?server=localhost%3A5432%3Aallow&database=vegbien&schema=public"));
     	print("</blockquote>\n");
+    }
     print("<h3>Primary databases</h3>");
+    {
     	print("<blockquote>\n");
     	add_ns("TNRS", ".term", fragment_override("http://tnrs.iplantcollaborative.org/instructions.html", "download_results"));
     	add_ns("CTFS", "", $Redmine."/wiki/CTFS");
+    	{
     		print("<blockquote>\n"); $h_level++;
     		add_ns("CTFS.schema", ".table.column", $Redmine_svn."/inputs/CTFS/_archive/DBv5.txt#");
     		add_ns("CTFS.tables", ".table", fragment_override($Redmine."/wiki/CTFS", "Tables"));
     		add_ns("CTFS.terms", ".term", $Redmine_svn."/inputs/CTFS/_src/ctfs-comments_worksheet.xls#");
     		print("</blockquote>\n"); $h_level--;
+    	}
     	add_ns("IH.db", ".term", $IH_db);
     	print("</blockquote>\n");
+    }
     print("<h3>People</h3>");
+    {
     	print("<blockquote>\n");
     	add_ns("Brad", "", "mailto:bboyleATemail.arizona.edu");
+    	{
     		print("<blockquote>\n"); $h_level++;
     		$Brad_Boyle_VegCore = $Redmine_svn."/schemas/VegCore/Brad_Boyle";
     		add_ns("Brad.data-provenance", ".term", $Brad_Boyle_VegCore."/BIEN%20database%20entities%20related%20to%20data%20provenance%20and%20ownership.docx#");
     		add_ns("Brad.DwC-IDs.2013-2-7", ".term", $Brad_Boyle_VegCore."/vegbien_identifiers.xlsx#");
     		add_ns("Brad.DwC-IDs.2013-1-31", ".term", $Brad_Boyle_VegCore."/vegbien_identifier_examples.xlsx#");
     		print("</blockquote>\n"); $h_level--;
+    	}
     	print("</blockquote>\n");
+    }
     print("</blockquote>\n");
     ?>
     				</td>
     				<td nowrap="nowrap"></td>
     				<td nowrap="nowrap">
     <?php
     print("<blockquote>\n");
     print("<h3>Institutions</h3>");
+    {
     	print("<blockquote>\n");
     	add_ns("IH", ".herbarium_code", by_prefix("http://sweetgum.nybg.org/ih/herbarium_list.php?QueryName=DetailedQuery&Restriction=NamPartyType+%3D+%27IH+Herbarium%27&col_NamOrganisationAcronym=",
     		"http://sweetgum.nybg.org/ih/"));
     	print("</blockquote>\n");
+    }
     print("</blockquote>\n");
     ?>
     				</td>
     			</tr>
     		</table>
     <?php
     if (ends_with($root, '#')) # URL shortener requires fragment redirect
+    {
     ?>
     		<script type="text/javascript">
     var loc = document.location
     if (loc.hash) document.location = '?'+rm_prefix('#', loc.hash)
     		</script>
     <?php
+    }
     ?>
     	</body>
     </html>
     <?php
     ob_end_flush();
     ?>

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/bien2/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/geoscrub/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/BIEN2/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^.*$ web/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/bien2_staging/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/bien_web/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/bien3_adb/ih/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/IH/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^$   http://sweetgum.nybg.org/ih/                                                                                                                            [discardpath,noescape,last]
     RewriteRule ^.+$ http://sweetgum.nybg.org/ih/herbarium_list.php?QueryName=DetailedQuery&Restriction=NamPartyType+\%3D+\%27IH+Herbarium\%27&col_NamOrganisationAcronym=$0 [discardpath,noescape,last]

     <?php
     function coalesce($value, $empty) { return isset($value) ? $value : $empty; }
     function starts_with($str, $prefix)
+    {
     	return substr($str, 0, strlen($prefix)) === $prefix;
+    }
     function ends_with($str, $suffix)
+    {
     	return substr($str, -strlen($suffix)) === $suffix;
+    }
     function rm_prefix($prefix, $str)
+    {
     	return starts_with($str, $prefix) ? substr($str, strlen($prefix)) : $str;
+    }
     function rm_suffix($suffix, $str)
+    {
     	return ends_with($str, $suffix) ?
     		substr($str, 0, strlen($str) - strlen($suffix)) : $str;
+    }
     function ensure_prefix($prefix, $str)
+    {
     	return starts_with($str, $prefix) ? $str : $prefix.$str;
+    }
     function ensure_suffix($suffix, $str)
+    {
     	return ends_with($str, $suffix) ? $str : $str.$suffix;
+    }
     class Path
+    {
     	public $head;
     	public $tail;
     	function Path($head, $tail="")
+    	{
     		$this->head = $head;
     		$this->tail = $tail;
+    	}
+    }
     function partition($str, $delim)
+    {
     	$delim_idx = strpos($str, $delim);
     	return $delim_idx !== false ? new Path(substr($str, 0, $delim_idx),
     		substr($str, $delim_idx+strlen($delim))) : new Path($str);
+    }
     function array_non_empty($array)
+    {
     	foreach ($array as $key => $value)
     		if (!isset($value) || $value === "") unset($array[$key]);
     	return $array;
+    }
     function join_non_empty($delim, $array)
+    {
     	return implode($delim, array_non_empty($array));
+    }
     function parse_dot_path($path) { return partition($path, "."); }
     function parse_mixed_path($path)
+    {
     	preg_match('/^([\w-]*)(.*)$/', $path, $path);
     	return new Path($path[1], rm_prefix(".", $path[2]));
+    }
     function strip_url($url) { return rm_suffix("#", $url); }
     ?>

www/main/.tnrs
1		link TNRS
2	0

     <VirtualHost *:80>
     	ServerRoot /home/bien/svn/web
     	ServerAdmin aaronmk@nceas.ucsb.edu
     	RewriteEngine on
     	RewriteMap tolower int:tolower
     	RewriteMap subdomain2path prg:subdomain2path
     	DocumentRoot .
     	<Directory main>
     		AllowOverride all
     	</Directory>
     	ErrorLog logs/error_log
     	CustomLog logs/access_log combined
     </VirtualHost>

     html {font-size: 10pt; font-family: Verdana, sans-serif;}
     a {color: blue; text-decoration: none;}
     a:hover {text-decoration: underline;}
     big, .big {font-size: 140%; font-weight: bold;}
     code, .code {font-weight: normal; font-family: Courier, monospace;}
     .progress {text-decoration: blink;}
     h2, h3, h4, h5, h6, blockquote {margin-bottom: 3pt; margin-right: 0;}
     h3, h4 {margin-top: 8pt;}
     blockquote, h5, h6 {margin-top: 4pt;}
     .indent {padding-left: 2em;}

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^$             http://vegbank.org/get/index/dba_tabledescription                                                                                           [discardpath,noescape,last]
     RewriteRule ^([^/]+)/(.*)$ http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&entity=dba_tabledescription&where=where_tablename&wparam=$1#$2 [discardpath,noescape,last]

www/main/.ctfs
1		link CTFS
2	0

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/VegBIEN/Redmine/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^.*$ wiki/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /VegBIEN/Redmine/main/repository/entry/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^$   /VegBIEN/Redmine/main/wiki/Database_development/ [discardpath,noescape,last]
     RewriteRule ^.+$ /VegBIEN/Redmine/main/wiki/$0                    [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ https://projects.nceas.ucsb.edu/nceas/projects/bien/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /VegBIEN/Redmine/main/repository/raw/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/vegbiendev/vegbien/public/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/VegBIEN/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^.*$ db/$0 [discardpath,noescape,last]

     #!/usr/bin/env php
     <?php
     while (($line = fgets(STDIN)) !== false)
+    {
     	$subdomain = rtrim($line, "\n");
     	$path = implode("/", array_reverse(explode(".", $subdomain)));
     	print($path."\n");
+    }
     ?>

www/main/svn-web
1		link .redmine/svn-web
2	0

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ http://tnrs.iplantcollaborative.org/instructions.html?$0#download_results [discardpath,noescape,last]

www/main/.vegx
1		link VegX
2	0

     function is_undef(value) { return typeof value === 'undefined' }
     function coalesce(value, empty) { return !is_undef(value) ? value : empty }
     function starts_with(str, prefix)
+    {
     	return str.substr(0, prefix.length) === prefix
+    }
     function ends_with(str, suffix) { return str.substr(-suffix.length) === suffix }
     function rm_prefix(prefix, str)
+    {
     	return starts_with(str, prefix) ? str.substr(prefix.length) : str
+    }
     function rm_suffix(suffix, str)
+    {
     	return ends_with(str, suffix) ?
     		str.substr(0, str.length - suffix.length) : str
+    }
     function partition(str, delim)
+    {
     	var delim_idx = str.indexOf(delim)
     	return delim_idx >= 0 ? {head: str.substr(0, delim_idx),
     		tail: str.substr(delim_idx+delim.length)} : {head: str, tail: ''}
+    }
     function parse_dot_path(path) { return partition(path, '.') }
     function parse_mixed_path(path)
+    {
     	path = /^([\w-]*)(.*)$/.exec(path)
     	return {head: path[1], tail: rm_prefix('.', path[2])}
+    }
     function strip_url(url) { return rm_suffix('#', url) }

     <?php
     # parses any dotpath in the query string
     require_once dirname(__FILE__)."/util.php";
     @list($path, $query) = explode("&", $_SERVER["QUERY_STRING"], 2);
     ## translate dotpaths (after the last /) to /-paths, e.g. d/a.[b.c] -> d/a/b.c
     # replace all unescaped . with / , e.g. a.[b.c] -> a/[b.c]
     # remove any [] escape, e.g. a.b=[c.d] -> a/b=c.d (the ] must be at the end)
     do
+    {
     	$old_path = $path;
     	$path = preg_replace('/^(.*\/)?(?=.)(\.?[^.\/]*?)(?:\[([^\[\]\/]*)\])?\.([^\/]*)$/',
     		'$1$2$3/$4', $path);
     } while ($path !== $old_path);
     $url = ensure_suffix("/", $_SERVER["PATH_INFO"]).$path
     	.(isset($query) ? "?&".$query : "");
     header("Location: ".$url);
     ?>

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ http://www.tdwg.org/standards/117/download/#/v101.xsd#$0 [discardpath,noescape,last]

www/main/.dwc
1		link DwC
2	0

www/main/.vegbien
1		link VegBIEN
2	0

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /Redmine/svn/inputs/CTFS/_src/ctfs-comments_worksheet.xls/#$0 [discardpath,noescape,last,redirect]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /Redmine/wiki/CTFS/?$0#Tables [discardpath,noescape,last,redirect]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/CTFS/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^.*$ schema/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /Redmine/svn/inputs/CTFS/_archive/DBv5.txt/#$0 [discardpath,noescape,last,redirect]

www/main/.redmine
1		link VegBIEN/Redmine
2	0

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/salvias_users/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/salvias_plots/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^(?!Plot_)(.+)$ Plot_$1 [discardpath,noescape]
     RewriteRule ^.*$ http://salvias.net/Documents/salvias_data_dictionary.html#$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/SALVIAS/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^.*$ dd/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^\[(.*)\]/([^/]*)/([^/]*)/([^/]*)/([^/]*)/(.+?)/?$ http://$1/redirect.php?server=$2&database=$3&schema=$4&table=$5&column=$6&subject=column [discardpath,noescape,last,redirect]
     RewriteRule ^\[(.*)\]/([^/]*)/([^/]*)/([^/]*)/(.+?)/?$         http://$1/redirect.php?server=$2&database=$3&schema=$4&table=$5&subject=table            [discardpath,noescape,last,redirect]
     RewriteRule ^\[(.*)\]/([^/]*)/([^/]*)/(.+?)/?$                 http://$1/redirect.php?server=$2&database=$3&schema=$4&subject=schema                    [discardpath,noescape,last,redirect]
     RewriteRule ^\[(.*)\]/([^/]*)/(.+?)/?$                         http://$1/redirect.php?server=$2&database=$3&subject=database                            [discardpath,noescape,last,redirect]
     RewriteRule ^\[(.*)\]/(.+?)/?$                                 http://$1/redirect.php?server=$2&subject=server                                          [discardpath,noescape,last,redirect]
     RewriteRule ^\[(.*)\]/?$                                       http://$1/redirect.php?subject=root                                                      [discardpath,noescape,last,redirect]

www/main/svn
1		link .redmine/svn
2	0

www/main/.tcs
1		link TCS
2	0

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#$0 [discardpath,noescape,last]

     #### URL resolution
     Options +FollowSymLinks
     DirectorySlash on
     DirectoryIndex index.php
     ### mod_rewrite
     RewriteEngine on
     RewriteOptions inherit
     # remove www subdomain
     RewriteCond %{HTTP_HOST} ^www\.(.*)$
     RewriteRule ^.*$ http://%1/$0 [discardpath,noescape,last]
     # remove linewraps used to create a newline for Google spreadsheets
     RewriteRule ^_-(.*)$ /$1 [discardpath,noescape,last,redirect]
     # translate subdomain to path
     RewriteCond %{HTTP_HOST} !=vegbiendev.nceas.ucsb.edu
     RewriteCond %{HTTP_HOST} ^(.*)\.([^.]*\.[^.]*)$
     RewriteRule ^.*$ http://%2/${subdomain2path:%1}/$0 [discardpath,noescape,last]
     # use separate lowercase version when available
     RewriteCond %{DOCUMENT_ROOT}/$1 !-d
     RewriteCond .${tolower:$1} ^.*$
     RewriteCond %{DOCUMENT_ROOT}/%0 -d
     RewriteRule ^([^/]*)(/.*)$ %0$2 [discardpath,noescape]
     # parse dotpath in the query string
     RewriteRule ^dotpath - [discardpath,noescape,last]
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # don't rewrite existing paths
     RewriteCond %{REQUEST_FILENAME} -d [ornext]
     RewriteCond %{REQUEST_FILENAME} -f
     RewriteRule ^.*$ - [discardpath,noescape,last]
     ## specific to /
     RewriteRule ^.*$ https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/VegCore#$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ http://rs.tdwg.org/dwc/terms/history/#$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ http://rs.tdwg.org/dwc/terms/#$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/DwC/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^.*$ terms/$0 [discardpath,noescape,last]

www/main/.bien2
1		link BIEN2
2	0

www/main/.ih
1		link IH
2	0

www/main/.salvias
1		link SALVIAS
2	0

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^\[(.*)\]/([^/]*)/([^/]*)/(.+?)/?$ http://$1/?db=$2&table=$3&column=$4&target=tbl_structure.php [discardpath,noescape,last,redirect]
     RewriteRule ^\[(.*)\]/([^/]*)/(.+?)/?$         http://$1/?db=$2&table=$3&target=tbl_structure.php           [discardpath,noescape,last,redirect]
     RewriteRule ^\[(.*)\]/(.+?)/?$                 http://$1/?db=$2&target=db_structure.php                     [discardpath,noescape,last,redirect]
     RewriteRule ^\[(.*)\]/?$                       http://$1/?target=server_databases.php                       [discardpath,noescape,last,redirect]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/bien2/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /servers/nimoy/bien2_staging/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/IH/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^$   http://sweetgum.nybg.org/ih/                                                                                                                            [discardpath,noescape,last]
     RewriteRule ^.+$ http://sweetgum.nybg.org/ih/herbarium_list.php?QueryName=DetailedQuery&Restriction=NamPartyType+\%3D+\%27IH+Herbarium\%27&col_NamOrganisationAcronym=$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^$             http://vegbank.org/get/index/dba_tabledescription                                                                                           [discardpath,noescape,last]
     RewriteRule ^([^/]+)/(.*)$ http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&entity=dba_tabledescription&where=where_tablename&wparam=$1#$2 [discardpath,noescape,last]

web/.salvias
	1	link SALVIAS
0	2

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ http://rs.tdwg.org/dwc/terms/history/#$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     # don't redirect subdir paths
     RewriteCond %{DOCUMENT_ROOT}/DwC/$1 -d
     RewriteRule ^([^/]+).*$ - [discardpath,noescape,last]
     # handle DirectoryIndex (this must be at this position in the rules)
     RewriteRule ^(.*/)?index\.php$ $1 [discardpath,noescape]
     RewriteRule ^.*$ terms/$0 [discardpath,noescape,last]

     RewriteEngine on
     RewriteOptions inherit
     # parse dotpath in the query string
     RewriteCond %{QUERY_STRING} ^(?!&).+$
     RewriteRule ^.*$ /dotpath.php%{REQUEST_URI} [discardpath,noescape,last]
     RewriteRule ^.*$ /.phpMyAdmin/[nimoy.nceas.ucsb.edu/phpmyadmin]/$0 [discardpath,noescape,last]

web/servers/vegbiendev/fs
	1	link ../../../..
0	2

     <?php
     require_once dirname(__FILE__)."/util.php";
     $self_dir = ensure_suffix("/", dirname($_SERVER["SCRIPT_NAME"]));
     # config
     $alias = "j.mp/vegpath#";
     function by_prefix($url, $main_url=null)
+    {
     	if (!isset($main_url)) $main_url = $url;
     	return function($path) use($url, $main_url)
+    	{
     		return $path ? $url.$path : $main_url;
     	};
+    }
     $h_level = 5;
     $root = $_SERVER["SERVER_NAME"] === gethostbyaddr($_SERVER["SERVER_ADDR"])
     	? $alias : $_SERVER["SERVER_NAME"].rm_suffix("/", $self_dir)."?";
     # instead of PATH_INFO, to support the Apache ErrorDocument directive
     $rel_fs_path = rm_prefix($self_dir, $_SERVER["REQUEST_URI"]);
     $path = parse_dot_path($rel_fs_path);
     $ns = strtolower($path->head);
     function add_ns($name, $path_pat, $url_func)
+    {
     	global $root, $h_level, $path, $ns;
     	if (is_string($url_func)) $url_func = by_prefix($url_func);
     	print("<h".$h_level.' id="'.$name.'">'.$root.'<big><a href="http://'.$root
     		.$name.'">'.$name."</a></big><i>".$path_pat."</i></h".$h_level.">\n");
     	if ($ns === strtolower($name)) # found match, so redirect
+    	{
     		header("Location: ".strip_url($url_func($path->tail)));
     		ob_end_flush();
     		exit;
+    	}
+    }
     function custom_separator($url, $sep, $main_url=null)
+    {
     	if (!isset($main_url)) $main_url = $url;
     	return function($path) use($url, $sep, $main_url)
+    	{
     		if ($path === "") return $main_url;
     		$path = parse_dot_path($path);
     		return $url.join_non_empty($sep, array($path->head, $path->tail));
     	};
+    }
     function fragment_override($url, $fragment=null)
+    {
     	return function($path) use($url, $fragment)
+    	{
     		if (!isset($fragment))
+    		{
     			$path = parse_dot_path($path);
     			$fragment = $path->head;
     			$path = $path->tail;
+    		}
     		if ($path !== "") $url .= "?".$path;
     		return $url."#".$fragment;
     	};
+    }
     function phpPgAdmin($url, $table=null)
+    {
     	return function($path) use($url, $table)
+    	{
     		$path = join_non_empty(".", array($table, $path));
     		$path = parse_dot_path($path);
     		$subject = "schema";
     		if ($path->head !== "")
+    		{
     			$url .= "&table=".$path->head;
     			if ($path->tail !== "")
+    			{
     				$url .= "&column=".$path->tail;
     				$subject = "column";
+    			}
     			else $subject = "table";
+    		}
     		$url .= "&subject=".$subject;
     		return $url;
     	};
+    }
     function phpMyAdmin($url, $table=null)
+    {
     	return function($path) use($url, $table)
+    	{
     		$path = join_non_empty(".", array($table, $path));
     		$path = parse_dot_path($path);
     		$target = "db_structure";
     		if ($path->head !== "")
+    		{
     			$url .= "&table=".$path->head;
     			if ($path->tail !== "") $url .= "&column=".$path->tail;
     			$target = "tbl_structure";
+    		}
     		$url .= "&target=".$target.".php";
     		return $url;
     	};
+    }
     ob_start(); // delay output in case there is a redirect
     ?>
     <html>
     	<head>
     		<title>VegPath</title>
     		<link rel="stylesheet" type="text/css" href="/main.css" />
     		<style type="text/css">
     h1 {color: green;}
     		</style>
     		<script type="text/javascript" src="/util.js"></script>
     	</head>
     	<body>

Project

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Profile

Revision 8371

Added by Aaron Marcuse-Kubitza over 11 years ago