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RewriteEngine on
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RewriteOptions inherit
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# parse dotpath in the query string
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RewriteCond %{QUERY_STRING} ^(?!&).+$
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RewriteCond %{REQUEST_URI} ^(.*?)(?:/index(?:\.\w+)?)?$
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RewriteRule ^.*$ /dotpath.php%1 [discardpath,noescape,last]
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# don't rewrite existing paths
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RewriteCond %{REQUEST_FILENAME} -d [ornext]
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RewriteCond %{REQUEST_FILENAME} -f
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RewriteRule ^.+$ - [discardpath,noescape,last]
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RewriteRule ^.*$ http://tnrs.iplantcollaborative.org/instructions.html?$0#download_results [discardpath,noescape,last]