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1
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##### Vars/functions
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2
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3
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coreMaps := DwC-VegBIEN.specimens.csv VegX-VegBIEN.organisms.csv
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4
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chRootMaps := VegX-VegBIEN.plots.csv VegX-VegBIEN.stems.csv
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5
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joinedMaps := $(filter-out DwC-% VegX-%,$(wildcard *-VegBIEN.*.csv))
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6
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all := $(wildcard for_review/*) $(joinedMaps) $(chRootMaps)
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7
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8
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##### General targets
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9
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10
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all: _always $(coreMaps) $(chRootMaps)
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11
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@#./join DwC VegBIEN
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12
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./join VegX VegBIEN
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13
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./review
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14
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15
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.SUFFIXES:
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16
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17
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_always:
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18
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.PHONY: _always
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19
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20
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clean: _always
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21
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$(RM) $(all)
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22
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23
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remake: _always clean all ;
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24
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25
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##### Core maps cleanup
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26
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27
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bin := ../bin
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28
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29
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$(coreMaps): %: .%.last_cleanup
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30
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$(bin)/in_place $@ $(bin)/simplify_xpath
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31
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$(bin)/in_place $@ $(bin)/sort 1 0
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32
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touch -r $@ $<
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33
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.PRECIOUS: .%.last_cleanup
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34
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# Ignore last_cleanup file if it doesn't exist
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35
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.%.last_cleanup:
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36
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37
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##### Maps generated with ch_root
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38
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39
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chRoot = $(bin)/ch_root <$< >$@
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40
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41
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VegX-VegBIEN.plots.csv: VegX-VegBIEN.organisms.csv
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42
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env \
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43
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left_in_root='/*s/individualOrganismObservation/*ID->/*s/plotObservation' \
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44
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left_out_root='/*s/plotObservation' \
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45
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right_in_root='/taxonoccurrence/*_id/locationevent' \
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46
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right_out_root='/locationevent' \
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47
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$(chRoot)
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48
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49
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VegX-VegBIEN.stems.csv: VegX-VegBIEN.organisms.csv
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50
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env \
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51
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left_in_root='/*s/individualOrganismObservation->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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52
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left_out_root='/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]' \
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53
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right_in_root='/taxonoccurrence/aggregateoccurrence/*_id/plantobservation/stemobservation' \
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54
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right_out_root='/stemobservation' \
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55
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$(chRoot)
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