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RewriteEngine on
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RewriteOptions AllowNoSlash
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# parse dotpath in the query string
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RewriteCond %{QUERY_STRING} ^(?!&).+$
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RewriteCond %{REQUEST_URI} ^(.*?)(?:/index(?:\.\w+)?)?$
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RewriteRule ^.*$ /dotpath%1 [discardpath,noescape,last]
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# don't rewrite existing paths
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RewriteCond %{REQUEST_FILENAME} -d [ornext]
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RewriteCond %{REQUEST_FILENAME} -f
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RewriteRule ^(?!/).+$ - [discardpath,noescape,last]
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# handle DirectoryIndex subrequests
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RewriteRule ^index$() $1 [discardpath,noescape]
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# dir without trailing / is provided as an absolute filesystem path
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RewriteCond $0 ^/ [ornext]
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RewriteCond ?&$0 ^(.*)$
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RewriteRule ^.+$ http://tnrs.iplantcollaborative.org/instructions.html%1#download_results [discardpath,noescape,last]