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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 7564 almost 12 years Aaron Marcuse-Kubitza lib/common.Makefile: remote server: Use jupiter...
  bin 8320 over 11 years Aaron Marcuse-Kubitza bin/make_analytical_db: Commented out export_an...
  config 7801 almost 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: mk_db: Added command...
  inputs 8652 over 11 years Aaron Marcuse-Kubitza lib/util.run: inline_make (): pass Makefile com...
  lib 8659 over 11 years Aaron Marcuse-Kubitza lib/util.run: added zip/unzip_newer aliases
  mappings 8235 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.htm: Renamed salvias_plots tab...
  planning 8457 over 11 years Aaron Marcuse-Kubitza Moved validation/ under planning/workflow/
  schemas 8678 over 11 years Aaron Marcuse-Kubitza schemas/VegCore/VegCore.ERD.mwb: specimen: spli...
  web 8602 over 11 years Aaron Marcuse-Kubitza added web/.twiki symlink to datasources/VegBIEN...
Makefile 12.2 KB 8627 over 11 years Aaron Marcuse-Kubitza bugfix: root Makefile: $(postgresReload-Linux):...
README.TXT 19.5 KB 8608 over 11 years Aaron Marcuse-Kubitza README.TXT: Maintenance: to synchronize vegbien...
fix_perms 97 Bytes 7560 almost 12 years Aaron Marcuse-Kubitza Added root fix_perms
map 1001 Bytes 6949 about 12 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 38.1 KB 7222 almost 12 years Aaron Marcuse-Kubitza new_terms.csv: Regenerated
unmapped_terms.csv 13.1 KB 7201 almost 12 years Aaron Marcuse-Kubitza **/new_terms.csv, **/unmapped_terms.csv: Regene...

Latest revisions

# Date Author Comment
8678 04/24/2013 12:01 PM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: specimen: split collection into orig,current_collection because the collection that scoped the accession_number (the orig_collection) is sometimes different than the collection where the specimen is now held (the current_collection, or specimen_holder_institutions), e.g. when the specimen is donated

8677 04/24/2013 11:49 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: collection: added institution, name to identify and scope the collection

8676 04/24/2013 11:39 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: changed taxon_name fkeys to taxon_concept where appropriate, and renamed the referencing columns to *_taxon_concept to clearly indicate the referenced table. taxon_concept fkeys are appropriate whenever a taxon is defined or associated with an observed entity, in which case the assertion is not just to a taxon name but to a defined taxon concept (albeit sometimes an unofficial taxon concept scoped by the collector or identifier).

8675 04/24/2013 11:08 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: specimen: added code_in_individual column

8674 04/24/2013 10:40 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: specimen: added fkey to individual for the individual the specimen was taken from

8673 04/24/2013 10:30 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: individual/stem_observation: made individual/stem nullable because there is not always enough identifying information (stem tag, etc.) to actually associate an identifiable individual with an observation

8672 04/24/2013 10:27 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: moved code from individual to individual_observation because the code is something applied at observation time, rather than something that can be used to track individuals between observations

8671 04/24/2013 10:17 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: moved collection_event from taxon_occurrence to specimen because only specimens are actually collected, while other taxon_occurrences (e.g. individuals) must be uniquely identified by some means that are shared between re-observations (e.g. the stem tag)

8670 04/24/2013 10:03 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: moved collector, collector_number from taxon_occurrence to taxon_observation because these are actually attributes that are available or assigned at observation time, rather than being intrinsic to the taxon_occurrence (which can be either an individual or a specimen)

8669 04/24/2013 09:34 AM Aaron Marcuse-Kubitza

schemas/VegCore/VegCore.ERD.mwb: method: colored it forest green like stratum because these are both tables in the same category (method), and forest green is the color VegBank uses for methods. (the fact that VegBank gives stratum the method color indicates that we are on the right track when we are treating stratum as a type of method that's essentially a height class.)

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