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Revision 87

Added by Aaron Marcuse-Kubitza about 13 years ago

Added NYBG stemCount metadata

View differences:

scripts/util/NYSpecimenDataAmericas.xml
3 3 
    <individualOrganismObservations>
4 4 
        <individualOrganismObservation id="0">
5 5 
            <plotObservationID>0</plotObservationID>
6 
            <simpleUserdefined>
7 
                <name>count</name>
8 
                <value>1</value>
9 
            </simpleUserdefined>
6 10 
            <individualOrganismID>0</individualOrganismID>
7 11 
            <simpleUserdefined>
8 12 
                <name>habitat</name>
......
15 19 
        </individualOrganismObservation>
16 20 
        <individualOrganismObservation id="1">
17 21 
            <plotObservationID>1</plotObservationID>
22 
            <simpleUserdefined>
23 
                <name>count</name>
24 
                <value>1</value>
25 
            </simpleUserdefined>
18 26 
            <individualOrganismID>1</individualOrganismID>
19 27 
        </individualOrganismObservation>
20 28 
    </individualOrganismObservations>
mappings/NYBG-VegX.organisms.csv
1 1 
"NYBG","VegX:/*s/individualOrganismObservation"
2 2 
":0","/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/simpleUserdefined[name=confidentialityStatus]/value"
3 
":1","/simpleUserdefined[name=count]/value"
3 4 
"key",
4 5 
"DateLastModified",
5 6 
"InstitutionCode","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/firstName"
mappings/joins/NYBG-VegBank.organisms.csv
1 1 
NYBG,VegBank:/taxonObservation
2 2 
:0,/*_ID/observation/*_ID/plot/confidentialityStatus
3 
:1,/taxonImportance/*/stemCount
3 4 
InstitutionCode,/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/museum_ID/party/OrganizationName/_name/firstName
4 5 
CollectionCode,/taxonImportance/stemCount/stemLocation/taxonInterpretation[PLANTCONCEPT_ID=]/museum_ID/party/OrganizationName/_name/lastName
5 6 
ScientificName,/taxonImportance/stemCount/stemLocation/taxonInterpretation(/*_ID/plantConcept[plantStatus/plantLevel=Species])/*_ID/*/plantName

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