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Revision 877

Added by Aaron Marcuse-Kubitza almost 13 years ago

Added NYBG-CSV tests

View differences:

inputs/NYBG-CSV/test/VegX.organisms.xml.ref
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<?xml version="1.0" ?>
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<VegX>
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    <individualOrganismObservations>
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        <individualOrganismObservation id="0">
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            <individualOrganismID>0</individualOrganismID>
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            <plotObservationID>0</plotObservationID>
7 
            <simpleUserdefined>
8 
                <name>habitat</name>
9 
                <value>Floodplain forest</value>
10 
            </simpleUserdefined>
11 
            <simpleUserdefined>
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                <name>plantFungusDescription</name>
13 
                <value>with rough brown bark, almost no buttressing, 1 m diam; fallen fruit and leaves</value>
14 
            </simpleUserdefined>
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        </individualOrganismObservation>
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        <individualOrganismObservation id="1">
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            <individualOrganismID>1</individualOrganismID>
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            <plotObservationID>1</plotObservationID>
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        </individualOrganismObservation>
20 
    </individualOrganismObservations>
21 
    <individualOrganisms>
22 
        <individualOrganism id="0"><taxonNameUsageConceptsID>0</taxonNameUsageConceptsID></individualOrganism>
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        <individualOrganism id="1"><taxonNameUsageConceptsID>1</taxonNameUsageConceptsID></individualOrganism>
24 
    </individualOrganisms>
25 
    <taxonNameUsageConcepts>
26 
        <taxonNameUsageConcept id="0">
27 
            <partyWithRole><partyID>0</partyID></partyWithRole>
28 
            <authorCode>9877</authorCode>
29 
            <voucher>816590</voucher>
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        </taxonNameUsageConcept>
31 
        <taxonNameUsageConcept id="1">
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            <partyWithRole><partyID>2</partyID></partyWithRole>
33 
            <authorCode>545</authorCode>
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            <voucher>220541</voucher>
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        </taxonNameUsageConcept>
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    </taxonNameUsageConcepts>
37 
    <parties>
38 
        <party id="0"><organizationName>NY Herbarium</organizationName></party>
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        <party id="1">
40 
            <individualName>
41 
                <givenName>R. B.</givenName>
42 
                <surName>Foster</surName>
43 
            </individualName>
44 
        </party>
45 
        <party id="2"><organizationName>NY Herbarium</organizationName></party>
46 
        <party id="3">
47 
            <individualName>
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                <givenName>J. B.</givenName>
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                <surName>Walker</surName>
50 
            </individualName>
51 
        </party>
52 
    </parties>
53 
    <taxonDeterminations>
54 
        <taxonDetermination>
55 
            <taxonNameUsageConceptID>0</taxonNameUsageConceptID>
56 
            <partyWithRole><role>identifier</role></partyWithRole>
57 
            <taxonRelationshipAssertions>
58 
                <taxonRelationshipAssertion><assertion><taxonNameID>0</taxonNameID></assertion></taxonRelationshipAssertion>
59 
                <taxonRelationshipAssertion><assertion><taxonConceptID>0</taxonConceptID></assertion></taxonRelationshipAssertion>
60 
                <taxonRelationshipAssertion><assertion><taxonConceptID>1</taxonConceptID></assertion></taxonRelationshipAssertion>
61 
                <taxonRelationshipAssertion><assertion><taxonConceptID>2</taxonConceptID></assertion></taxonRelationshipAssertion>
62 
                <taxonRelationshipAssertion><assertion><taxonConceptID>3</taxonConceptID></assertion></taxonRelationshipAssertion>
63 
                <taxonRelationshipAssertion><assertion><taxonConceptID>4</taxonConceptID></assertion></taxonRelationshipAssertion>
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                <taxonRelationshipAssertion><assertion><taxonConceptID>5</taxonConceptID></assertion></taxonRelationshipAssertion>
65 
            </taxonRelationshipAssertions>
66 
        </taxonDetermination>
67 
        <taxonDetermination>
68 
            <taxonNameUsageConceptID>0</taxonNameUsageConceptID>
69 
            <partyWithRole>
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                <role>collector</role>
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                <partyID>1</partyID>
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            </partyWithRole>
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        </taxonDetermination>
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        <taxonDetermination>
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            <taxonNameUsageConceptID>1</taxonNameUsageConceptID>
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            <partyWithRole><role>identifier</role></partyWithRole>
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            <taxonRelationshipAssertions>
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                <taxonRelationshipAssertion><assertion><taxonNameID>1</taxonNameID></assertion></taxonRelationshipAssertion>
79 
                <taxonRelationshipAssertion><assertion><taxonConceptID>6</taxonConceptID></assertion></taxonRelationshipAssertion>
80 
                <taxonRelationshipAssertion><assertion><taxonConceptID>7</taxonConceptID></assertion></taxonRelationshipAssertion>
81 
                <taxonRelationshipAssertion><assertion><taxonConceptID>8</taxonConceptID></assertion></taxonRelationshipAssertion>
82 
            </taxonRelationshipAssertions>
83 
        </taxonDetermination>
84 
        <taxonDetermination>
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            <taxonNameUsageConceptID>1</taxonNameUsageConceptID>
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            <partyWithRole>
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                <role>collector</role>
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                <partyID>3</partyID>
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            </partyWithRole>
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        </taxonDetermination>
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    </taxonDeterminations>
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    <taxonNames>
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        <taxonName id="0"><Simple>Cariniana estrellensis (Raddi) Kuntze</Simple></taxonName>
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        <taxonName id="1"><Simple>Scrophulariaceae</Simple></taxonName>
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    </taxonNames>
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    <taxonConcepts>
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        <taxonConcept id="0">
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            <Rank code="reg"/>
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            <Name>Plantae</Name>
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        </taxonConcept>
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        <taxonConcept id="1">
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            <Rank code="phyl_div"/>
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            <Name>Magnoliophyta (flowering plants)</Name>
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        </taxonConcept>
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        <taxonConcept id="2">
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            <Rank code="fam"/>
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            <Name>Lecythidaceae</Name>
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        </taxonConcept>
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        <taxonConcept id="3">
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            <Rank code="gen"/>
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            <Name>Cariniana</Name>
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        </taxonConcept>
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        <taxonConcept id="4">
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            <Rank code="sp"/>
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            <Name>estrellensis</Name>
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        </taxonConcept>
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        <taxonConcept id="5">
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            <Rank code="auth"/>
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            <Name>(Raddi) Kuntze</Name>
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        </taxonConcept>
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        <taxonConcept id="6">
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            <Rank code="reg"/>
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            <Name>Plantae</Name>
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        </taxonConcept>
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        <taxonConcept id="7">
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            <Rank code="phyl_div"/>
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            <Name>Magnoliophyta (flowering plants)</Name>
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        </taxonConcept>
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        <taxonConcept id="8">
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            <Rank code="fam"/>
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            <Name>Scrophulariaceae</Name>
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        </taxonConcept>
133 
    </taxonConcepts>
134 
    <plotObservations>
135 
        <plotObservation id="0">
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            <obsStartDate>1984-08-20</obsStartDate>
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            <plotUniqueIdentifierID>0</plotUniqueIdentifierID>
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        </plotObservation>
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        <plotObservation id="1">
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            <obsStartDate>1994-01-17</obsStartDate>
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            <plotUniqueIdentifierID>1</plotUniqueIdentifierID>
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        </plotObservation>
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    </plotObservations>
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    <plots>
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        <plot id="0">
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            <country>Peru</country>
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            <state>Madre de Dios</state>
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            <county>Man&#250;</county>
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            <simpleUserdefined>
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                <name>locality</name>
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                <value>Parque Nacional del Manu. R&#237;o Manu: Cocha Casha Station</value>
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            </simpleUserdefined>
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            <geospatial>
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                <DecimalLongitude>-71.40</DecimalLongitude>
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                <DecimalLatitude>-11.80</DecimalLatitude>
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                <minimumElevationInMeters>350</minimumElevationInMeters>
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                <maximumElevationInMeters>350</maximumElevationInMeters>
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            </geospatial>
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        </plot>
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        <plot id="1">
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            <country>Belize</country>
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            <state>Belize District</state>
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            <simpleUserdefined>
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                <name>locality</name>
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                <value>Belize Zoo, in savanna plot immediately behind zoo. Mile 31 on Western Highway</value>
166 
            </simpleUserdefined>
167 
            <geospatial>
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                <DecimalLongitude>-88.50</DecimalLongitude>
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                <DecimalLatitude>17.40</DecimalLatitude>
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                <minimumElevationInMeters>15</minimumElevationInMeters>
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                <maximumElevationInMeters>15</maximumElevationInMeters>
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            </geospatial>
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        </plot>
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    </plots>
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</VegX>
inputs/NYBG-CSV/test/VegBIEN.organisms.xml.ref
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<?xml version="1.0" ?>
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<VegBIEN>
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    <taxonoccurrence id="0">
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        <locationevent_id>
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            <locationevent>
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                <location_id>
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                    <location>
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                        <locationplace>
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                            <namedplace_id>
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                                <namedplace>
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                                    <placesystem>area|country|territory</placesystem>
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                                    <placename>Peru</placename>
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                                </namedplace>
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                            </namedplace_id>
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                        </locationplace>
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                        <locationplace>
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                            <namedplace_id>
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                                <namedplace>
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                                    <placesystem>region|state|province</placesystem>
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                                    <placename>Madre de Dios</placename>
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                                </namedplace>
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                            </namedplace_id>
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                        </locationplace>
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                        <locationplace>
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                            <namedplace_id>
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                                <namedplace>
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                                    <placesystem>county</placesystem>
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                                    <placename>Man&#250;</placename>
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                                    <placedescription>Parque Nacional del Manu. R&#237;o Manu: Cocha Casha Station</placedescription>
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                                </namedplace>
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                            </namedplace_id>
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                        </locationplace>
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                        <reallatitude>-11.80</reallatitude>
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                        <reallongitude>-71.40</reallongitude>
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                        <elevation>350.0</elevation>
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                        <elevationrange>0.0</elevationrange>
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                    </location>
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                </location_id>
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                <obsstartdate>1984-08-20</obsstartdate>
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            </locationevent>
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        </locationevent_id>
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        <aggregateoccurrence>
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            <plantobservation_id>
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                <plantobservation>
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                    <stemobservation>
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                        <definedvalue fkey="tableRecord_ID">
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                            <userdefined_id>
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                                <userdefined>
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                                    <tablename>stemobservation</tablename>
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                                    <userdefinedname>habitat</userdefinedname>
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                                </userdefined>
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                            </userdefined_id>
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                            <definedvalue>Floodplain forest</definedvalue>
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                        </definedvalue>
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                        <definedvalue fkey="tableRecord_ID">
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                            <userdefined_id>
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                                <userdefined>
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                                    <tablename>stemobservation</tablename>
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                                    <userdefinedname>plantFungusDescription</userdefinedname>
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                                </userdefined>
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                            </userdefined_id>
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                            <definedvalue>with rough brown bark, almost no buttressing, 1 m diam; fallen fruit and leaves</definedvalue>
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                        </definedvalue>
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                    </stemobservation>
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                    <authorplantcode>816590</authorplantcode>
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                </plantobservation>
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            </plantobservation_id>
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        </aggregateoccurrence>
69 
        <specimenreplicate>
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            <reference_id><reference/></reference_id>
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            <catalognumber_dwc>9877</catalognumber_dwc>
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            <verbatimcollectorname>R. B. Foster</verbatimcollectorname>
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            <museum_id><party><organizationname>NY Herbarium</organizationname></party></museum_id>
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            <collectioncode_dwc>Herbarium</collectioncode_dwc>
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            <sourceaccessioncode>816590</sourceaccessioncode>
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        </specimenreplicate>
77 
        <taxondetermination>
78 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
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            <determinationtype>Author</determinationtype>
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            <isoriginal>true</isoriginal>
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            <iscurrent>true</iscurrent>
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            <plantconcept_id><plantconcept><plantname_id><plantname><plantname>Cariniana estrellensis (Raddi) Kuntze</plantname></plantname></plantname_id></plantconcept></plantconcept_id>
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        </taxondetermination>
84 
        <taxondetermination>
85 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
86 
            <plantconcept_id>
87 
                <plantconcept>
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                    <plantstatus><plantlevel>Authority</plantlevel></plantstatus>
89 
                    <plantname_id><plantname><plantname>(Raddi) Kuntze</plantname></plantname></plantname_id>
90 
                </plantconcept>
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            </plantconcept_id>
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            <determinationtype>Author</determinationtype>
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            <isoriginal>true</isoriginal>
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            <iscurrent>true</iscurrent>
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        </taxondetermination>
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        <taxondetermination>
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            <role_id><role><rolecode>identifier</rolecode></role></role_id>
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            <plantconcept_id>
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                <plantconcept>
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                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
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                    <plantname_id><plantname><plantname>Lecythidaceae</plantname></plantname></plantname_id>
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                </plantconcept>
103 
            </plantconcept_id>
104 
            <determinationtype>Author</determinationtype>
105 
            <isoriginal>true</isoriginal>
106 
            <iscurrent>true</iscurrent>
107 
        </taxondetermination>
108 
        <taxondetermination>
109 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
110 
            <plantconcept_id>
111 
                <plantconcept>
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                    <plantstatus><plantlevel>Genus</plantlevel></plantstatus>
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                    <plantname_id><plantname><plantname>Cariniana</plantname></plantname></plantname_id>
114 
                </plantconcept>
115 
            </plantconcept_id>
116 
            <determinationtype>Author</determinationtype>
117 
            <isoriginal>true</isoriginal>
118 
            <iscurrent>true</iscurrent>
119 
        </taxondetermination>
120 
        <taxondetermination>
121 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
122 
            <plantconcept_id>
123 
                <plantconcept>
124 
                    <plantstatus><plantlevel>Kingdom</plantlevel></plantstatus>
125 
                    <plantname_id><plantname><plantname>Plantae</plantname></plantname></plantname_id>
126 
                </plantconcept>
127 
            </plantconcept_id>
128 
            <determinationtype>Author</determinationtype>
129 
            <isoriginal>true</isoriginal>
130 
            <iscurrent>true</iscurrent>
131 
        </taxondetermination>
132 
        <taxondetermination>
133 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
134 
            <plantconcept_id>
135 
                <plantconcept>
136 
                    <plantstatus><plantlevel>Species</plantlevel></plantstatus>
137 
                    <plantname_id><plantname><plantname>estrellensis</plantname></plantname></plantname_id>
138 
                </plantconcept>
139 
            </plantconcept_id>
140 
            <determinationtype>Author</determinationtype>
141 
            <isoriginal>true</isoriginal>
142 
            <iscurrent>true</iscurrent>
143 
        </taxondetermination>
144 
        <taxondetermination>
145 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
146 
            <plantconcept_id>
147 
                <plantconcept>
148 
                    <plantstatus><plantlevel>Subkingdom</plantlevel></plantstatus>
149 
                    <plantname_id><plantname><plantname>Magnoliophyta (flowering plants)</plantname></plantname></plantname_id>
150 
                </plantconcept>
151 
            </plantconcept_id>
152 
            <determinationtype>Author</determinationtype>
153 
            <isoriginal>true</isoriginal>
154 
            <iscurrent>true</iscurrent>
155 
        </taxondetermination>
156 
    </taxonoccurrence>
157 
    <taxonoccurrence id="1">
158 
        <locationevent_id>
159 
            <locationevent>
160 
                <location_id>
161 
                    <location>
162 
                        <locationplace>
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                            <namedplace_id>
164 
                                <namedplace>
165 
                                    <placesystem>area|country|territory</placesystem>
166 
                                    <placename>Belize</placename>
167 
                                </namedplace>
168 
                            </namedplace_id>
169 
                        </locationplace>
170 
                        <locationplace>
171 
                            <namedplace_id>
172 
                                <namedplace>
173 
                                    <placesystem>region|state|province</placesystem>
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                                    <placename>Belize District</placename>
175 
                                    <placedescription>Belize Zoo, in savanna plot immediately behind zoo. Mile 31 on Western Highway</placedescription>
176 
                                </namedplace>
177 
                            </namedplace_id>
178 
                        </locationplace>
179 
                        <reallatitude>17.40</reallatitude>
180 
                        <reallongitude>-88.50</reallongitude>
181 
                        <elevation>15.0</elevation>
182 
                        <elevationrange>0.0</elevationrange>
183 
                    </location>
184 
                </location_id>
185 
                <obsstartdate>1994-01-17</obsstartdate>
186 
            </locationevent>
187 
        </locationevent_id>
188 
        <specimenreplicate>
189 
            <reference_id><reference/></reference_id>
190 
            <catalognumber_dwc>545</catalognumber_dwc>
191 
            <verbatimcollectorname>J. B. Walker</verbatimcollectorname>
192 
            <museum_id><party><organizationname>NY Herbarium</organizationname></party></museum_id>
193 
            <collectioncode_dwc>Herbarium</collectioncode_dwc>
194 
            <sourceaccessioncode>220541</sourceaccessioncode>
195 
        </specimenreplicate>
196 
        <taxondetermination>
197 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
198 
            <determinationtype>Author</determinationtype>
199 
            <isoriginal>true</isoriginal>
200 
            <iscurrent>true</iscurrent>
201 
            <plantconcept_id><plantconcept><plantname_id><plantname><plantname>Scrophulariaceae</plantname></plantname></plantname_id></plantconcept></plantconcept_id>
202 
        </taxondetermination>
203 
        <taxondetermination>
204 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
205 
            <plantconcept_id>
206 
                <plantconcept>
207 
                    <plantstatus><plantlevel>Family</plantlevel></plantstatus>
208 
                    <plantname_id><plantname><plantname>Scrophulariaceae</plantname></plantname></plantname_id>
209 
                </plantconcept>
210 
            </plantconcept_id>
211 
            <determinationtype>Author</determinationtype>
212 
            <isoriginal>true</isoriginal>
213 
            <iscurrent>true</iscurrent>
214 
        </taxondetermination>
215 
        <taxondetermination>
216 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
217 
            <plantconcept_id>
218 
                <plantconcept>
219 
                    <plantstatus><plantlevel>Kingdom</plantlevel></plantstatus>
220 
                    <plantname_id><plantname><plantname>Plantae</plantname></plantname></plantname_id>
221 
                </plantconcept>
222 
            </plantconcept_id>
223 
            <determinationtype>Author</determinationtype>
224 
            <isoriginal>true</isoriginal>
225 
            <iscurrent>true</iscurrent>
226 
        </taxondetermination>
227 
        <taxondetermination>
228 
            <role_id><role><rolecode>identifier</rolecode></role></role_id>
229 
            <plantconcept_id>
230 
                <plantconcept>
231 
                    <plantstatus><plantlevel>Subkingdom</plantlevel></plantstatus>
232 
                    <plantname_id><plantname><plantname>Magnoliophyta (flowering plants)</plantname></plantname></plantname_id>
233 
                </plantconcept>
234 
            </plantconcept_id>
235 
            <determinationtype>Author</determinationtype>
236 
            <isoriginal>true</isoriginal>
237 
            <iscurrent>true</iscurrent>
238 
        </taxondetermination>
239 
        <aggregateoccurrence><plantobservation_id><plantobservation><authorplantcode>220541</authorplantcode></plantobservation></plantobservation_id></aggregateoccurrence>
240 
    </taxonoccurrence>
241 
</VegBIEN>
inputs/NYBG-CSV/test/import.organisms.out.ref
1 
Inserted 83 new rows into database

Also available in: Unified diff