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Revision 88

Added by Aaron Marcuse-Kubitza about 13 years ago

Made it easier to accept test output

View differences:

scripts/util/test_map
8 8 
test -n "$n" || n=2
9 9 
let n++
10 10 

  		




  11
  
  
    
head -"$n" NYSpecimenDataAmericas.csv|../map \


  		




  12
  
  
    
../../mappings/NYBG-VegX.organisms.csv >NYSpecimenDataAmericas.test.xml \


  		




  13
  
  
    
&& diff NYSpecimenDataAmericas.xml NYSpecimenDataAmericas.test.xml


  		




  
  11
  
    
in=NYSpecimenDataAmericas.csv


  		




  
  12
  
    
out=NYSpecimenDataAmericas.xml


  		




  14
  13
  
    

  		




  15
  
  
    
head -"$n" NYSpecimenDataAmericas.csv|../map2vegbank \


  		




  16
  
  
    
../../mappings/joins/NYBG-VegBank.organisms.csv


  		




  
  14
  
    
head -"$n" "$in"|../map ../../mappings/NYBG-VegX.organisms.csv \


  		




  
  15
  
    
>"test_output/$out" && diff "$out" "test_output/$out"


  		




  
  16
  
    

  		




  
  17
  
    
head -"$n" "$in"|../map2vegbank ../../mappings/joins/NYBG-VegBank.organisms.csv


  		












  

    
      scripts/util/accept_test_output
    
  





  
  1
  
    
#!/bin/bash


  		




  
  2
  
    
# Sets the correct test output to be the generated test output


  		




  
  3
  
    
# Usage: self file


  		




  
  4
  
    

  		




  
  5
  
    
selfDir="$(dirname -- "$0")"


  		




  
  6
  
    
cd "$selfDir"


  		




  
  7
  
    

  		




  
  8
  
    
file="$(basename -- "$1")"


  		




  
  9
  
    
cp -p "$file" "test_output/$file"


  		




  0
  10
  
    

  		












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