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Revision 8826

Added by Aaron Marcuse-Kubitza over 11 years ago

inputs/NVS/*/map.csv: Taxon Growth Form: use new _lowercase() to avoid needing to manually map each value that is already valid but just needs to be lowercased

View differences:

inputs/NVS/AggregateOccurrence/map.csv
8 8 
Verbatim Code,authorTaxonCode,/_alt/1,
9 9 
Taxon Bio Status,*Taxon Bio Status,,
10 10 
Taxon Palatibility,*Taxon Palatibility,,
11 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
11 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
12 12 
Tier,*Tier,,
13 13 
Tier Description,*Tier Description,,
14 14 
Tier ID,*Tier ID,,
inputs/NVS/AggregateOccurrence/VegBIEN.csv
12 12 
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
13 13 
Verbatim Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/1",
14 14 
Species Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/2",
15 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
15 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
16 16 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
17 17 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
18 18 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
inputs/NVS/AggregateOccurrence/test.xml.ref
20 20 
                                </authortaxoncode>
21 21 
                                <growthform>
22 22 
                                    <_map>
23 
                                        <Graminoid>grass</Graminoid>
24 
                                        <Shrub>shrub</Shrub>
25 
                                        <Tree>tree</Tree>
26 
                                        <Treefern>forb</Treefern>
27 
                                        <value>$Taxon Growth Form</value>
23 
                                        <graminoid>grass</graminoid>
24 
                                        <treefern>forb</treefern>
25 
                                        <*>*</*>
26 
                                        <value><_lowercase><value>$Taxon Growth Form</value></_lowercase></value>
28 27 
                                    </_map>
29 28 
                                </growthform>
30 29 
                                <taxondetermination>
inputs/NVS/AggregateOccurrence/new_terms.csv
2 2 
Plot,locationName,,
3 3 
Species Code,authorTaxonCode,/_alt/2,
4 4 
Verbatim Code,authorTaxonCode,/_alt/1,
5 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
5 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
6 6 
Taxon Obs Note,taxonRemarks,,
inputs/NVS/TaxonOccurrence.Understory/map.csv
8 8 
Verbatim Code,authorTaxonCode,/_alt/1,
9 9 
Taxon Bio Status,*Taxon Bio Status,,
10 10 
Taxon Palatibility,*Taxon Palatibility,,
11 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
11 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
12 12 
Tier,*Tier,,
13 13 
Tier Description,*Tier Description,,
14 14 
Tier ID,*Tier ID,,
inputs/NVS/TaxonOccurrence.Understory/VegBIEN.csv
12 12 
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
13 13 
Verbatim Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/1",
14 14 
Species Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/2",
15 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
15 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
16 16 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
17 17 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
18 18 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
inputs/NVS/TaxonOccurrence.Understory/test.xml.ref
20 20 
                                </authortaxoncode>
21 21 
                                <growthform>
22 22 
                                    <_map>
23 
                                        <Graminoid>grass</Graminoid>
24 
                                        <Shrub>shrub</Shrub>
25 
                                        <Tree>tree</Tree>
26 
                                        <Treefern>forb</Treefern>
27 
                                        <value>$Taxon Growth Form</value>
23 
                                        <graminoid>grass</graminoid>
24 
                                        <treefern>forb</treefern>
25 
                                        <*>*</*>
26 
                                        <value><_lowercase><value>$Taxon Growth Form</value></_lowercase></value>
28 27 
                                    </_map>
29 28 
                                </growthform>
30 29 
                                <taxondetermination>
inputs/NVS/TaxonOccurrence.Understory/new_terms.csv
2 2 
Plot,locationName,,
3 3 
Species Code,authorTaxonCode,/_alt/2,
4 4 
Verbatim Code,authorTaxonCode,/_alt/1,
5 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
5 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
6 6 
Taxon Obs Note,taxonRemarks,,
inputs/NVS/TaxonOccurrence/map.csv
8 8 
Verbatim Code,authorTaxonCode,/_alt/1,
9 9 
Taxon Bio Status,*Taxon Bio Status,,
10 10 
Taxon Palatibility,*Taxon Palatibility,,
11 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
11 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
12 12 
Herbivore,*Herbivore,,
13 13 
Severity,*Severity,,
14 14 
Taxon Obs Note,taxonRemarks,,
inputs/NVS/TaxonOccurrence/VegBIEN.csv
12 12 
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
13 13 
Verbatim Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/1",
14 14 
Species Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/2",
15 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
15 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
16 16 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
17 17 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
18 18 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
inputs/NVS/TaxonOccurrence/test.xml.ref
20 20 
                                </authortaxoncode>
21 21 
                                <growthform>
22 22 
                                    <_map>
23 
                                        <Graminoid>grass</Graminoid>
24 
                                        <Shrub>shrub</Shrub>
25 
                                        <Tree>tree</Tree>
26 
                                        <Treefern>forb</Treefern>
27 
                                        <value>$Taxon Growth Form</value>
23 
                                        <graminoid>grass</graminoid>
24 
                                        <treefern>forb</treefern>
25 
                                        <*>*</*>
26 
                                        <value><_lowercase><value>$Taxon Growth Form</value></_lowercase></value>
28 27 
                                    </_map>
29 28 
                                </growthform>
30 29 
                                <taxondetermination>
inputs/NVS/TaxonOccurrence/new_terms.csv
2 2 
Plot,locationName,,
3 3 
Species Code,authorTaxonCode,/_alt/2,
4 4 
Verbatim Code,authorTaxonCode,/_alt/1,
5 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
5 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
6 6 
Taxon Obs Note,taxonRemarks,,
inputs/NVS/StemObservation/map.csv
9 9 
Verbatim Code,authorTaxonCode,/_alt/1,
10 10 
Taxon Bio Status,*Taxon Bio Status,,
11 11 
Taxon Palatibility,*Taxon Palatibility,,
12 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
12 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
13 13 
Association No,*Association No,,
14 14 
Association,*Association,,
15 15 
Alive State,*Alive State,,
inputs/NVS/StemObservation/VegBIEN.csv
21 21 
Verbatim Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/1",
22 22 
Species Code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_if[@name=""if individual""]/else/_alt/2",
23 23 
Identifier,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2",
24 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
24 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
25 25 
Item ID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
26 26 
Item Obs ID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
27 27 
Item Obs ID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else/_first/1",
inputs/NVS/StemObservation/test.xml.ref
25 25 
                                <authortaxoncode>$Identifier</authortaxoncode>
26 26 
                                <growthform>
27 27 
                                    <_map>
28 
                                        <Graminoid>grass</Graminoid>
29 
                                        <Shrub>shrub</Shrub>
30 
                                        <Tree>tree</Tree>
31 
                                        <Treefern>forb</Treefern>
32 
                                        <value>$Taxon Growth Form</value>
28 
                                        <graminoid>grass</graminoid>
29 
                                        <treefern>forb</treefern>
30 
                                        <*>*</*>
31 
                                        <value><_lowercase><value>$Taxon Growth Form</value></_lowercase></value>
33 32 
                                    </_map>
34 33 
                                </growthform>
35 34 
                                <sourceaccessioncode>$Item Obs ID</sourceaccessioncode>
inputs/NVS/StemObservation/new_terms.csv
3 3 
Identifier,tag,,
4 4 
Species Code,authorTaxonCode,/_alt/2,
5 5 
Verbatim Code,authorTaxonCode,/_alt/1,
6 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
6 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
7 7 
Diameter,diameterBreastHeight_cm,,Units is always cm
8 8 
Item Obs ID,individualObservationID,,
9 9 
Item ID,individualID,,
inputs/NVS/map.csv
9 9 
Project Abbreviation,projectName,,
10 10 
Slope,slopeAspect,,
11 11 
Species Code,authorTaxonCode,/_alt/2,
12 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
12 
Taxon Growth Form,growthForm,"/_map:[graminoid=grass,treefern=forb,*=*]/value/_lowercase/value",
13 13 
Taxon Obs Note,taxonRemarks,,
14 14 
Verbatim Code,authorTaxonCode,/_alt/1,

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