| 1 |
8699
|
aaronmk
|
#!/bin/bash -e
|
| 2 |
|
|
# links to locally-available resources
|
| 3 |
8893
|
aaronmk
|
. "$(dirname "${BASH_SOURCE[0]}")"/util.sh
|
| 4 |
8699
|
aaronmk
|
|
| 5 |
8705
|
aaronmk
|
if self_not_included; then
|
| 6 |
|
|
|
| 7 |
8894
|
aaronmk
|
root_dir="$(dirname "${BASH_SOURCE[0]}")"/..
|
| 8 |
8699
|
aaronmk
|
bin_dir="$root_dir"/bin
|
| 9 |
8705
|
aaronmk
|
|
| 10 |
8708
|
aaronmk
|
export PATH="$bin_dir:$PATH"
|
| 11 |
|
|
|
| 12 |
8890
|
aaronmk
|
#### connection vars
|
| 13 |
|
|
|
| 14 |
|
|
: "${remote_server=vegbiendev.nceas.ucsb.edu}"
|
| 15 |
|
|
: "${local_server=localhost}"
|
| 16 |
|
|
: "${local_user=bien}"
|
| 17 |
|
|
: "${local_password="$(cat "$root_dir"/config/bien_password)"}"
|
| 18 |
|
|
|
| 19 |
|
|
#### databases
|
| 20 |
|
|
|
| 21 |
|
|
### MySQL
|
| 22 |
|
|
|
| 23 |
8891
|
aaronmk
|
: "${postgres_compat=1}"
|
| 24 |
|
|
|
| 25 |
8777
|
aaronmk
|
mysql ()
|
| 26 |
|
|
{
|
| 27 |
8881
|
aaronmk
|
echo_func
|
| 28 |
8777
|
aaronmk
|
echo_run mysql_bien --database="$schema" --verbose "$@"
|
| 29 |
|
|
}
|
| 30 |
|
|
|
| 31 |
8892
|
aaronmk
|
mysqldump_local ()
|
| 32 |
|
|
{
|
| 33 |
|
|
echo_func
|
| 34 |
|
|
use_local_remote; mysqldump_diffable "$@"
|
| 35 |
|
|
}
|
| 36 |
|
|
|
| 37 |
8890
|
aaronmk
|
### PostgreSQL
|
| 38 |
|
|
|
| 39 |
8833
|
aaronmk
|
psql () # usage: [file=...] [dir=...] self
|
| 40 |
8777
|
aaronmk
|
{
|
| 41 |
8881
|
aaronmk
|
echo_func
|
| 42 |
8777
|
aaronmk
|
if test -n "$file"; then
|
| 43 |
|
|
set -- --file "$file" "$@"
|
| 44 |
8834
|
aaronmk
|
local dir="${dir:-$(dirname "$file")}"
|
| 45 |
8777
|
aaronmk
|
fi
|
| 46 |
8834
|
aaronmk
|
local dir="${dir:-$top_dir}"
|
| 47 |
8777
|
aaronmk
|
|
| 48 |
8790
|
aaronmk
|
local psql_cmd="psql_$(if log_sql; then echo verbose; else echo script; fi)_vegbien"
|
| 49 |
8777
|
aaronmk
|
(cat <<EOF
|
| 50 |
|
|
\cd $dir
|
| 51 |
|
|
\set schema "$schema"
|
| 52 |
|
|
\set table "$table"
|
| 53 |
|
|
\set table_str '''"$table"'''
|
| 54 |
|
|
SET search_path TO "$schema", util;
|
| 55 |
|
|
EOF
|
| 56 |
|
|
cat)|
|
| 57 |
8873
|
aaronmk
|
env no_search_path=1 "$psql_cmd" --output /dev/fd/3 "$@" 3>&1 >&2
|
| 58 |
8777
|
aaronmk
|
}
|
| 59 |
|
|
|
| 60 |
8705
|
aaronmk
|
fi
|
