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1
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SET @OLD_UNIQUE_CHECKS=@@UNIQUE_CHECKS, UNIQUE_CHECKS=0;
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2
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SET @OLD_FOREIGN_KEY_CHECKS=@@FOREIGN_KEY_CHECKS, FOREIGN_KEY_CHECKS=0;
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3
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SET @OLD_SQL_MODE=@@SQL_MODE, SQL_MODE='TRADITIONAL,ALLOW_INVALID_DATES';
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4
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5
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CREATE SCHEMA IF NOT EXISTS `VegCore` DEFAULT CHARACTER SET utf8 COLLATE utf8_bin ;
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6
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USE `VegCore` ;
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7
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8
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-- -----------------------------------------------------
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9
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-- Table `source`
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10
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-- -----------------------------------------------------
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11
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DROP TABLE IF EXISTS `source` ;
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12
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13
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CREATE TABLE IF NOT EXISTS `source` (
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14
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`id` VARBINARY(767) NOT NULL ,
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15
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`parent` VARBINARY(767) NOT NULL ,
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16
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`name` VARBINARY(767) NOT NULL ,
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`first_publisher` VARBINARY(767) NULL DEFAULT NULL ,
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18
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`owner` VARBINARY(767) NULL DEFAULT NULL ,
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`info` SET('hstore') NULL ,
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20
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PRIMARY KEY (`id`) ,
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21
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INDEX `fk_source1_idx` (`parent` ASC) ,
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22
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INDEX `fk_source_party1_idx` (`owner` ASC) ,
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23
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UNIQUE INDEX `source_unique` (`parent` ASC, `name` ASC) ,
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24
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INDEX `fk_source_party2_idx` (`first_publisher` ASC) ,
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25
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CONSTRAINT `fk_source1`
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26
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FOREIGN KEY (`parent` )
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27
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REFERENCES `source` (`id` )
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28
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ON DELETE CASCADE
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29
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ON UPDATE CASCADE,
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30
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CONSTRAINT `fk_source_party1`
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31
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FOREIGN KEY (`owner` )
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32
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REFERENCES `party` (`id` )
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33
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ON DELETE CASCADE
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34
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ON UPDATE CASCADE,
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35
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CONSTRAINT `fk_source_party2`
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36
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FOREIGN KEY (`first_publisher` )
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37
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REFERENCES `party` (`id` )
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38
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ON DELETE CASCADE
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39
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ON UPDATE CASCADE)
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40
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ENGINE = InnoDB
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41
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DEFAULT CHARACTER SET = utf8
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42
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COLLATE = utf8_bin
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43
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COMMENT = 'a \"reference [...] cited within the database\" (\"VegBank\":http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=reference&entity=dba_tabledescription&where=where_tablename)';
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44
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45
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46
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-- -----------------------------------------------------
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47
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-- Table `record`
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48
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-- -----------------------------------------------------
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49
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DROP TABLE IF EXISTS `record` ;
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50
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51
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CREATE TABLE IF NOT EXISTS `record` (
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52
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`id` VARBINARY(767) NOT NULL ,
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53
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`source` VARBINARY(767) NOT NULL ,
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54
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`source_id_scope` VARBINARY(767) NULL ,
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55
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`source_record_id` VARBINARY(767) NULL DEFAULT NULL ,
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56
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`info` SET('hstore') NULL ,
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57
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PRIMARY KEY (`id`) ,
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58
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INDEX `fk_record_source1_idx` (`source` ASC) ,
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59
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UNIQUE INDEX `record_unique` (`source` ASC, `source_id_scope` ASC, `source_record_id` ASC) ,
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60
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CONSTRAINT `fk_record_source1`
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61
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FOREIGN KEY (`source` )
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62
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REFERENCES `source` (`id` )
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63
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ON DELETE CASCADE
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64
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ON UPDATE CASCADE)
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65
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ENGINE = InnoDB
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66
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DEFAULT CHARACTER SET = utf8
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67
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COLLATE = utf8_bin;
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68
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69
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70
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-- -----------------------------------------------------
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71
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-- Table `party`
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72
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-- -----------------------------------------------------
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73
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DROP TABLE IF EXISTS `party` ;
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74
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75
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CREATE TABLE IF NOT EXISTS `party` (
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76
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`id` VARBINARY(767) NOT NULL ,
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77
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`info` SET('hstore') NULL ,
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78
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PRIMARY KEY (`id`) ,
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79
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CONSTRAINT `fk_collection_source10`
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80
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FOREIGN KEY (`id` )
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81
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REFERENCES `record` (`id` )
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82
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ON DELETE CASCADE
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83
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ON UPDATE CASCADE)
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84
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ENGINE = InnoDB
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85
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DEFAULT CHARACTER SET = utf8
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86
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COLLATE = utf8_bin;
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87
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88
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89
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-- -----------------------------------------------------
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90
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-- Table `relationship`
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91
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-- -----------------------------------------------------
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92
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DROP TABLE IF EXISTS `relationship` ;
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93
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94
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CREATE TABLE IF NOT EXISTS `relationship` (
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95
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`id` VARBINARY(767) NOT NULL ,
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96
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`record` VARBINARY(767) NOT NULL ,
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97
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`related_record` VARBINARY(767) NOT NULL ,
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98
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`info` SET('hstore') NULL ,
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99
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PRIMARY KEY (`id`) ,
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100
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INDEX `fk_relationship_record1_idx` (`record` ASC) ,
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101
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INDEX `fk_relationship_related_record_idx` (`related_record` ASC) ,
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102
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CONSTRAINT `fk_relationship_record1`
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103
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FOREIGN KEY (`id` )
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104
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REFERENCES `record` (`id` )
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105
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ON DELETE CASCADE
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106
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ON UPDATE CASCADE,
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107
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CONSTRAINT `fk_relationship_record2`
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108
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FOREIGN KEY (`record` )
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109
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REFERENCES `record` (`id` )
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110
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ON DELETE CASCADE
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111
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ON UPDATE CASCADE,
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112
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CONSTRAINT `fk_relationship_related_record`
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113
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FOREIGN KEY (`related_record` )
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114
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REFERENCES `record` (`id` )
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115
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ON DELETE CASCADE
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116
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ON UPDATE CASCADE)
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117
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ENGINE = InnoDB
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118
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DEFAULT CHARACTER SET = utf8
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119
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COLLATE = utf8_bin
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120
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COMMENT = '\"information pertaining to relationships between resources (instances of data records, such as Occurrences, Taxa, Locations, Events)\" (\"DwC\":http://rs.tdwg.org/dwc/terms/#ResourceRelationship)';
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121
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122
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123
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-- -----------------------------------------------------
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124
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-- Table `organization`
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125
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-- -----------------------------------------------------
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126
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DROP TABLE IF EXISTS `organization` ;
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127
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128
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CREATE TABLE IF NOT EXISTS `organization` (
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129
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`id` VARBINARY(767) NOT NULL ,
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130
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`info` SET('hstore') NULL ,
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131
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PRIMARY KEY (`id`) ,
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132
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CONSTRAINT `fk_organization_party1`
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133
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FOREIGN KEY (`id` )
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134
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REFERENCES `party` (`id` )
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135
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ON DELETE CASCADE
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136
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ON UPDATE CASCADE)
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137
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ENGINE = InnoDB
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138
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DEFAULT CHARACTER SET = utf8
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139
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COLLATE = utf8_bin;
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140
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141
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142
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-- -----------------------------------------------------
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143
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-- Table `collection`
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144
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-- -----------------------------------------------------
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145
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DROP TABLE IF EXISTS `collection` ;
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146
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147
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CREATE TABLE IF NOT EXISTS `collection` (
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148
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`id` VARBINARY(767) NOT NULL ,
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149
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`institution` VARBINARY(767) NOT NULL ,
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150
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`name` VARBINARY(767) NOT NULL ,
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151
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INDEX `fk_collection_organization1_idx` (`institution` ASC) ,
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152
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UNIQUE INDEX `collection_unique` (`institution` ASC, `name` ASC) ,
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153
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INDEX `fk_collection_source1_idx` (`id` ASC) ,
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154
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PRIMARY KEY (`id`) ,
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155
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CONSTRAINT `fk_collection_source1`
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156
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FOREIGN KEY (`id` )
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157
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REFERENCES `record` (`id` )
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158
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ON DELETE CASCADE
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159
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ON UPDATE CASCADE,
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160
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CONSTRAINT `fk_collection_organization1`
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161
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FOREIGN KEY (`institution` )
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162
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REFERENCES `organization` (`id` )
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163
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ON DELETE CASCADE
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164
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ON UPDATE CASCADE)
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165
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ENGINE = InnoDB
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166
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DEFAULT CHARACTER SET = utf8
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167
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COLLATE = utf8_bin
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168
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COMMENT = '\"the collection within the institution where a specimen is held\" (\"Brad Boyle\":https://projects.nceas.ucsb.edu/nceas/attachments/download/621/vegbien_identifier_examples.xlsx#terms/collectionCode)';
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169
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170
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171
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-- -----------------------------------------------------
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172
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-- Table `taxon_assertion`
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173
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-- -----------------------------------------------------
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174
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DROP TABLE IF EXISTS `taxon_assertion` ;
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175
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176
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CREATE TABLE IF NOT EXISTS `taxon_assertion` (
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177
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`id` VARBINARY(767) NOT NULL ,
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178
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`string` VARBINARY(767) NOT NULL ,
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179
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`taxon` VARBINARY(767) NULL DEFAULT NULL ,
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180
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`cf_aff` VARBINARY(767) NULL DEFAULT NULL ,
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181
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`annotations` SET('hstore') NULL ,
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182
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PRIMARY KEY (`id`) ,
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183
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INDEX `fk_taxon_assertion_taxon_string1_idx` (`string` ASC) ,
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184
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INDEX `fk_taxon_assertion_taxon_name1_idx` (`taxon` ASC) ,
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185
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CONSTRAINT `fk_qualified_taxon_record1`
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186
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FOREIGN KEY (`id` )
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187
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REFERENCES `record` (`id` )
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188
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ON DELETE CASCADE
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189
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ON UPDATE CASCADE,
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190
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CONSTRAINT `fk_taxon_assertion_taxon_string1`
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191
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FOREIGN KEY (`string` )
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192
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REFERENCES `taxon_string` (`string` )
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193
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ON DELETE CASCADE
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194
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ON UPDATE CASCADE,
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195
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CONSTRAINT `fk_taxon_assertion_taxon_name1`
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196
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FOREIGN KEY (`taxon` )
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197
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REFERENCES `taxon_name` (`id` )
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198
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ON DELETE CASCADE
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199
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ON UPDATE CASCADE)
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200
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ENGINE = InnoDB
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201
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DEFAULT CHARACTER SET = utf8
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202
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COLLATE = utf8_bin;
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203
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204
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205
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-- -----------------------------------------------------
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206
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-- Table `taxon_concept`
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207
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-- -----------------------------------------------------
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208
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DROP TABLE IF EXISTS `taxon_concept` ;
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209
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210
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CREATE TABLE IF NOT EXISTS `taxon_concept` (
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211
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`id` VARBINARY(767) NOT NULL ,
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212
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`according_to` VARBINARY(767) NOT NULL ,
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213
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`parent` VARBINARY(767) NOT NULL ,
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214
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`accepted_taxon_concept` VARBINARY(767) NULL DEFAULT NULL ,
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215
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PRIMARY KEY (`id`) ,
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216
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INDEX `fk_taxon_taxon1_idx` (`parent` ASC) ,
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217
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INDEX `fk_taxon_concept_source1_idx` (`according_to` ASC) ,
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218
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INDEX `fk_taxon_concept_taxon_concept1_idx` (`accepted_taxon_concept` ASC) ,
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219
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UNIQUE INDEX `taxon_concept_unique_name` (`according_to` ASC) ,
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220
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CONSTRAINT `fk_taxon_taxon1`
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221
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FOREIGN KEY (`parent` )
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222
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REFERENCES `taxon_concept` (`id` )
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223
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ON DELETE CASCADE
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224
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ON UPDATE CASCADE,
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225
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CONSTRAINT `fk_taxon_concept_source1`
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226
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FOREIGN KEY (`according_to` )
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227
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REFERENCES `source` (`id` )
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228
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ON DELETE CASCADE
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229
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ON UPDATE CASCADE,
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230
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CONSTRAINT `fk_taxon_concept_taxon_concept1`
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231
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FOREIGN KEY (`accepted_taxon_concept` )
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232
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REFERENCES `taxon_concept` (`id` )
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233
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ON DELETE CASCADE
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234
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ON UPDATE CASCADE,
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235
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CONSTRAINT `fk_taxon_concept_taxon_name1`
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236
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FOREIGN KEY (`id` )
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237
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REFERENCES `taxon_name` (`id` )
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238
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ON DELETE CASCADE
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239
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ON UPDATE CASCADE)
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240
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ENGINE = InnoDB
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241
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DEFAULT CHARACTER SET = utf8
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242
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COLLATE = utf8_bin
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243
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COMMENT = 'A [[VegCore#Taxon|Taxon]] described by a specific [[VegCore#Reference|Reference]]';
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244
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245
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246
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-- -----------------------------------------------------
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247
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-- Table `parsed_taxon_assertion`
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248
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-- -----------------------------------------------------
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249
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DROP TABLE IF EXISTS `parsed_taxon_assertion` ;
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250
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251
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CREATE TABLE IF NOT EXISTS `parsed_taxon_assertion` (
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252
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`id` VARBINARY(767) NOT NULL ,
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253
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`matched_taxon_concept` VARBINARY(767) NULL DEFAULT NULL ,
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254
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`match_score` FLOAT NULL ,
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255
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`match_info` SET('hstore') NULL ,
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256
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PRIMARY KEY (`id`) ,
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257
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INDEX `fk_parsed_taxon_assertion_taxon_name1_idx` (`matched_taxon_concept` ASC) ,
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258
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CONSTRAINT `fk_matched_taxon_qualified_taxon10`
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259
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FOREIGN KEY (`id` )
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260
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REFERENCES `taxon_assertion` (`id` )
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261
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ON DELETE CASCADE
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262
|
ON UPDATE CASCADE,
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263
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CONSTRAINT `fk_parsed_taxon_assertion_taxon_name1`
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264
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FOREIGN KEY (`matched_taxon_concept` )
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265
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REFERENCES `taxon_concept` (`id` )
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266
|
ON DELETE CASCADE
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267
|
ON UPDATE CASCADE)
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268
|
ENGINE = InnoDB
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269
|
DEFAULT CHARACTER SET = utf8
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270
|
COLLATE = utf8_bin;
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271
|
|
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272
|
|
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273
|
-- -----------------------------------------------------
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274
|
-- Table `taxon_string`
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275
|
-- -----------------------------------------------------
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276
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DROP TABLE IF EXISTS `taxon_string` ;
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277
|
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278
|
CREATE TABLE IF NOT EXISTS `taxon_string` (
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279
|
`string` VARBINARY(767) NOT NULL ,
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280
|
`parsed_taxon_assertion` VARBINARY(767) NULL DEFAULT NULL ,
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281
|
PRIMARY KEY (`string`) ,
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282
|
INDEX `fk_taxon_string_parsed_taxon_assertion1_idx` (`parsed_taxon_assertion` ASC) ,
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283
|
CONSTRAINT `fk_taxon_string_parsed_taxon_assertion1`
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284
|
FOREIGN KEY (`parsed_taxon_assertion` )
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285
|
REFERENCES `parsed_taxon_assertion` (`id` )
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286
|
ON DELETE CASCADE
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|
287
|
ON UPDATE CASCADE)
|
|
288
|
ENGINE = InnoDB
|
|
289
|
DEFAULT CHARACTER SET = utf8
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|
290
|
COLLATE = utf8_bin;
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|
291
|
|
|
292
|
|
|
293
|
-- -----------------------------------------------------
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294
|
-- Table `taxon_name`
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|
295
|
-- -----------------------------------------------------
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|
296
|
DROP TABLE IF EXISTS `taxon_name` ;
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297
|
|
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298
|
CREATE TABLE IF NOT EXISTS `taxon_name` (
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299
|
`id` VARBINARY(767) NOT NULL ,
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300
|
`unique_name` VARBINARY(767) NOT NULL ,
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|
301
|
`formal_name` VARBINARY(767) NULL DEFAULT NULL ,
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302
|
`taxon_name` VARBINARY(767) NULL DEFAULT NULL ,
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303
|
`author` VARBINARY(767) NULL DEFAULT NULL ,
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304
|
`common_name` VARBINARY(767) NULL DEFAULT NULL ,
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305
|
`rank` VARBINARY(767) NULL DEFAULT NULL ,
|
|
306
|
PRIMARY KEY (`id`) ,
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|
307
|
INDEX `fk_taxon_concept_taxon_string10_idx` (`unique_name` ASC) ,
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|
308
|
CONSTRAINT `fk_taxon_record10`
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|
309
|
FOREIGN KEY (`id` )
|
|
310
|
REFERENCES `record` (`id` )
|
|
311
|
ON DELETE CASCADE
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|
312
|
ON UPDATE CASCADE,
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|
313
|
CONSTRAINT `fk_taxon_concept_taxon_string10`
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|
314
|
FOREIGN KEY (`unique_name` )
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|
315
|
REFERENCES `taxon_string` (`string` )
|
|
316
|
ON DELETE CASCADE
|
|
317
|
ON UPDATE CASCADE)
|
|
318
|
ENGINE = InnoDB
|
|
319
|
DEFAULT CHARACTER SET = utf8
|
|
320
|
COLLATE = utf8_bin;
|
|
321
|
|
|
322
|
|
|
323
|
-- -----------------------------------------------------
|
|
324
|
-- Table `coordinates`
|
|
325
|
-- -----------------------------------------------------
|
|
326
|
DROP TABLE IF EXISTS `coordinates` ;
|
|
327
|
|
|
328
|
CREATE TABLE IF NOT EXISTS `coordinates` (
|
|
329
|
`id` VARBINARY(767) NOT NULL ,
|
|
330
|
`latitude_deg` VARBINARY(767) NULL DEFAULT NULL ,
|
|
331
|
`longitude_deg` VARBINARY(767) NULL DEFAULT NULL ,
|
|
332
|
PRIMARY KEY (`id`) )
|
|
333
|
ENGINE = InnoDB
|
|
334
|
DEFAULT CHARACTER SET = utf8
|
|
335
|
COLLATE = utf8_bin
|
|
336
|
COMMENT = 'A numerically-defined point';
|
|
337
|
|
|
338
|
|
|
339
|
-- -----------------------------------------------------
|
|
340
|
-- Table `place_path`
|
|
341
|
-- -----------------------------------------------------
|
|
342
|
DROP TABLE IF EXISTS `place_path` ;
|
|
343
|
|
|
344
|
CREATE TABLE IF NOT EXISTS `place_path` (
|
|
345
|
`id` VARBINARY(767) NOT NULL ,
|
|
346
|
`continent` VARBINARY(767) NULL DEFAULT NULL ,
|
|
347
|
`country` VARBINARY(767) NULL DEFAULT NULL ,
|
|
348
|
`state_province` VARBINARY(767) NULL DEFAULT NULL ,
|
|
349
|
`county` VARBINARY(767) NULL DEFAULT NULL ,
|
|
350
|
`municipality` VARBINARY(767) NULL DEFAULT NULL ,
|
|
351
|
`ranks` SET('hstore') NULL ,
|
|
352
|
PRIMARY KEY (`id`) )
|
|
353
|
ENGINE = InnoDB
|
|
354
|
DEFAULT CHARACTER SET = utf8
|
|
355
|
COLLATE = utf8_bin
|
|
356
|
COMMENT = 'A named region';
|
|
357
|
|
|
358
|
|
|
359
|
-- -----------------------------------------------------
|
|
360
|
-- Table `place`
|
|
361
|
-- -----------------------------------------------------
|
|
362
|
DROP TABLE IF EXISTS `place` ;
|
|
363
|
|
|
364
|
CREATE TABLE IF NOT EXISTS `place` (
|
|
365
|
`id` VARBINARY(767) NOT NULL ,
|
|
366
|
`parent` VARBINARY(767) NOT NULL ,
|
|
367
|
`coordinates` VARBINARY(767) NULL DEFAULT NULL ,
|
|
368
|
`path` VARBINARY(767) NULL DEFAULT NULL ,
|
|
369
|
`locality` VARBINARY(767) NULL DEFAULT NULL ,
|
|
370
|
PRIMARY KEY (`id`) ,
|
|
371
|
INDEX `fk_place_coordinates1_idx` (`coordinates` ASC) ,
|
|
372
|
INDEX `fk_place1_idx` (`parent` ASC) ,
|
|
373
|
INDEX `fk_place_place_path1_idx` (`path` ASC) ,
|
|
374
|
CONSTRAINT `fk_place_record1`
|
|
375
|
FOREIGN KEY (`id` )
|
|
376
|
REFERENCES `record` (`id` )
|
|
377
|
ON DELETE CASCADE
|
|
378
|
ON UPDATE CASCADE,
|
|
379
|
CONSTRAINT `fk_place_coordinates1`
|
|
380
|
FOREIGN KEY (`coordinates` )
|
|
381
|
REFERENCES `coordinates` (`id` )
|
|
382
|
ON DELETE CASCADE
|
|
383
|
ON UPDATE CASCADE,
|
|
384
|
CONSTRAINT `fk_place1`
|
|
385
|
FOREIGN KEY (`parent` )
|
|
386
|
REFERENCES `place` (`id` )
|
|
387
|
ON DELETE CASCADE
|
|
388
|
ON UPDATE CASCADE,
|
|
389
|
CONSTRAINT `fk_place_place_path1`
|
|
390
|
FOREIGN KEY (`path` )
|
|
391
|
REFERENCES `place_path` (`id` )
|
|
392
|
ON DELETE CASCADE
|
|
393
|
ON UPDATE CASCADE)
|
|
394
|
ENGINE = InnoDB
|
|
395
|
DEFAULT CHARACTER SET = utf8
|
|
396
|
COLLATE = utf8_bin
|
|
397
|
COMMENT = '\"A spatial region\" (\"DwC\":http://rs.tdwg.org/dwc/terms/#dcterms:Location) or point';
|
|
398
|
|
|
399
|
|
|
400
|
-- -----------------------------------------------------
|
|
401
|
-- Table `method`
|
|
402
|
-- -----------------------------------------------------
|
|
403
|
DROP TABLE IF EXISTS `method` ;
|
|
404
|
|
|
405
|
CREATE TABLE IF NOT EXISTS `method` (
|
|
406
|
`id` VARBINARY(767) NOT NULL ,
|
|
407
|
`parent` VARBINARY(767) NOT NULL ,
|
|
408
|
`info` SET('hstore') NULL ,
|
|
409
|
PRIMARY KEY (`id`) ,
|
|
410
|
INDEX `fk_method_method1_idx` (`parent` ASC) ,
|
|
411
|
CONSTRAINT `fk_method_record1`
|
|
412
|
FOREIGN KEY (`id` )
|
|
413
|
REFERENCES `record` (`id` )
|
|
414
|
ON DELETE CASCADE
|
|
415
|
ON UPDATE CASCADE,
|
|
416
|
CONSTRAINT `fk_method_method1`
|
|
417
|
FOREIGN KEY (`parent` )
|
|
418
|
REFERENCES `method` (`id` )
|
|
419
|
ON DELETE CASCADE
|
|
420
|
ON UPDATE CASCADE)
|
|
421
|
ENGINE = InnoDB
|
|
422
|
DEFAULT CHARACTER SET = utf8
|
|
423
|
COLLATE = utf8_bin
|
|
424
|
COMMENT = '\"A specific method definition followed in the creation of the dataset. Each method links to a protocol and literature citation reference. A protocol may have many method or steps.\" (\"VegX\":http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/methods/method)';
|
|
425
|
|
|
426
|
|
|
427
|
-- -----------------------------------------------------
|
|
428
|
-- Table `event`
|
|
429
|
-- -----------------------------------------------------
|
|
430
|
DROP TABLE IF EXISTS `event` ;
|
|
431
|
|
|
432
|
CREATE TABLE IF NOT EXISTS `event` (
|
|
433
|
`id` VARBINARY(767) NOT NULL ,
|
|
434
|
`parent` VARBINARY(767) NOT NULL ,
|
|
435
|
`name` VARBINARY(767) NULL DEFAULT NULL ,
|
|
436
|
`date_range` VARBINARY(767) NULL DEFAULT NULL ,
|
|
437
|
`place` VARBINARY(767) NULL DEFAULT NULL ,
|
|
438
|
`method` VARBINARY(767) NULL DEFAULT NULL ,
|
|
439
|
PRIMARY KEY (`id`) ,
|
|
440
|
INDEX `fk_event_place1_idx` (`place` ASC) ,
|
|
441
|
INDEX `fk_event1_idx` (`parent` ASC) ,
|
|
442
|
INDEX `fk_event_method1_idx` (`method` ASC) ,
|
|
443
|
CONSTRAINT `fk_event_record1`
|
|
444
|
FOREIGN KEY (`id` )
|
|
445
|
REFERENCES `record` (`id` )
|
|
446
|
ON DELETE CASCADE
|
|
447
|
ON UPDATE CASCADE,
|
|
448
|
CONSTRAINT `fk_event_place1`
|
|
449
|
FOREIGN KEY (`place` )
|
|
450
|
REFERENCES `place` (`id` )
|
|
451
|
ON DELETE CASCADE
|
|
452
|
ON UPDATE CASCADE,
|
|
453
|
CONSTRAINT `fk_event1`
|
|
454
|
FOREIGN KEY (`parent` )
|
|
455
|
REFERENCES `event` (`id` )
|
|
456
|
ON DELETE CASCADE
|
|
457
|
ON UPDATE CASCADE,
|
|
458
|
CONSTRAINT `fk_event_method1`
|
|
459
|
FOREIGN KEY (`method` )
|
|
460
|
REFERENCES `method` (`id` )
|
|
461
|
ON DELETE CASCADE
|
|
462
|
ON UPDATE CASCADE)
|
|
463
|
ENGINE = InnoDB
|
|
464
|
DEFAULT CHARACTER SET = utf8
|
|
465
|
COLLATE = utf8_bin
|
|
466
|
COMMENT = '\"an action that occurs at a place and during a period of time\" (\"DwC\":http://rs.tdwg.org/dwc/terms/#Event)';
|
|
467
|
|
|
468
|
|
|
469
|
-- -----------------------------------------------------
|
|
470
|
-- Table `specimen`
|
|
471
|
-- -----------------------------------------------------
|
|
472
|
DROP TABLE IF EXISTS `specimen` ;
|
|
473
|
|
|
474
|
CREATE TABLE IF NOT EXISTS `specimen` (
|
|
475
|
`id` VARBINARY(767) NOT NULL ,
|
|
476
|
`individual` VARBINARY(767) NULL ,
|
|
477
|
`code_in_individual` VARBINARY(767) NULL ,
|
|
478
|
`collection_event` VARBINARY(767) NULL ,
|
|
479
|
`orig_collection` VARBINARY(767) NULL DEFAULT NULL ,
|
|
480
|
`barcode` VARBINARY(767) NULL DEFAULT NULL ,
|
|
481
|
`accession_number` VARBINARY(767) NULL DEFAULT NULL ,
|
|
482
|
`current_collection` VARBINARY(767) NULL ,
|
|
483
|
`owner_collection` VARBINARY(767) NULL ,
|
|
484
|
PRIMARY KEY (`id`) ,
|
|
485
|
INDEX `fk_specimen_collection1_idx` (`orig_collection` ASC) ,
|
|
486
|
INDEX `fk_specimen_taxon_observation1_idx` (`collection_event` ASC) ,
|
|
487
|
INDEX `fk_specimen_individual1_idx` (`individual` ASC) ,
|
|
488
|
INDEX `fk_specimen_collection2_idx` (`current_collection` ASC) ,
|
|
489
|
INDEX `fk_specimen_organization3_idx` (`owner_collection` ASC) ,
|
|
490
|
UNIQUE INDEX `specimen_unique_in_individual` (`individual` ASC, `code_in_individual` ASC) ,
|
|
491
|
UNIQUE INDEX `specimen_unique_by_collection_event` (`collection_event` ASC) ,
|
|
492
|
UNIQUE INDEX `specimen_unique_in_collection_by_barcode` (`orig_collection` ASC, `barcode` ASC) ,
|
|
493
|
UNIQUE INDEX `specimen_unique_in_collection_by_accession_number` (`orig_collection` ASC, `accession_number` ASC) ,
|
|
494
|
CONSTRAINT `fk_specimen_taxon_occurrence1`
|
|
495
|
FOREIGN KEY (`id` )
|
|
496
|
REFERENCES `taxon_occurrence` (`id` )
|
|
497
|
ON DELETE CASCADE
|
|
498
|
ON UPDATE CASCADE,
|
|
499
|
CONSTRAINT `fk_specimen_collection1`
|
|
500
|
FOREIGN KEY (`orig_collection` )
|
|
501
|
REFERENCES `collection` (`id` )
|
|
502
|
ON DELETE CASCADE
|
|
503
|
ON UPDATE CASCADE,
|
|
504
|
CONSTRAINT `fk_specimen_organization3`
|
|
505
|
FOREIGN KEY (`owner_collection` )
|
|
506
|
REFERENCES `collection` (`id` )
|
|
507
|
ON DELETE CASCADE
|
|
508
|
ON UPDATE CASCADE,
|
|
509
|
CONSTRAINT `fk_specimen_taxon_observation1`
|
|
510
|
FOREIGN KEY (`collection_event` )
|
|
511
|
REFERENCES `taxon_observation` (`id` )
|
|
512
|
ON DELETE CASCADE
|
|
513
|
ON UPDATE CASCADE,
|
|
514
|
CONSTRAINT `fk_specimen_individual1`
|
|
515
|
FOREIGN KEY (`individual` )
|
|
516
|
REFERENCES `individual` (`id` )
|
|
517
|
ON DELETE CASCADE
|
|
518
|
ON UPDATE CASCADE,
|
|
519
|
CONSTRAINT `fk_specimen_collection2`
|
|
520
|
FOREIGN KEY (`current_collection` )
|
|
521
|
REFERENCES `collection` (`id` )
|
|
522
|
ON DELETE CASCADE
|
|
523
|
ON UPDATE CASCADE)
|
|
524
|
ENGINE = InnoDB
|
|
525
|
DEFAULT CHARACTER SET = utf8
|
|
526
|
COLLATE = utf8_bin
|
|
527
|
COMMENT = 'A \"part of a plant\" (\"Wikipedia\":http://en.wikipedia.org/wiki/Specimen) which was collected from it';
|
|
528
|
|
|
529
|
|
|
530
|
-- -----------------------------------------------------
|
|
531
|
-- Table `taxon_observation`
|
|
532
|
-- -----------------------------------------------------
|
|
533
|
DROP TABLE IF EXISTS `taxon_observation` ;
|
|
534
|
|
|
535
|
CREATE TABLE IF NOT EXISTS `taxon_observation` (
|
|
536
|
`id` VARBINARY(767) NOT NULL ,
|
|
537
|
`taxon_occurrence` VARBINARY(767) NOT NULL ,
|
|
538
|
`collector` VARBINARY(767) NULL ,
|
|
539
|
`collector_number` VARBINARY(767) NULL ,
|
|
540
|
`voucher` VARBINARY(767) NULL DEFAULT NULL ,
|
|
541
|
`growth_form` VARBINARY(767) NULL DEFAULT NULL ,
|
|
542
|
`cultivated` TINYINT(1) NULL ,
|
|
543
|
`traits` SET('hstore') NULL ,
|
|
544
|
PRIMARY KEY (`id`) ,
|
|
545
|
INDEX `fk_taxon_observation_taxon_occurrence2_idx` (`taxon_occurrence` ASC) ,
|
|
546
|
INDEX `fk_taxon_observation_specimen1_idx` (`voucher` ASC) ,
|
|
547
|
INDEX `fk_taxon_observation_party1_idx` (`collector` ASC) ,
|
|
548
|
CONSTRAINT `fk_taxon_observation_event1`
|
|
549
|
FOREIGN KEY (`id` )
|
|
550
|
REFERENCES `event` (`id` )
|
|
551
|
ON DELETE CASCADE
|
|
552
|
ON UPDATE CASCADE,
|
|
553
|
CONSTRAINT `fk_taxon_observation_taxon_occurrence2`
|
|
554
|
FOREIGN KEY (`taxon_occurrence` )
|
|
555
|
REFERENCES `taxon_occurrence` (`id` )
|
|
556
|
ON DELETE CASCADE
|
|
557
|
ON UPDATE CASCADE,
|
|
558
|
CONSTRAINT `fk_taxon_observation_specimen1`
|
|
559
|
FOREIGN KEY (`voucher` )
|
|
560
|
REFERENCES `specimen` (`id` )
|
|
561
|
ON DELETE CASCADE
|
|
562
|
ON UPDATE CASCADE,
|
|
563
|
CONSTRAINT `fk_taxon_observation_party1`
|
|
564
|
FOREIGN KEY (`collector` )
|
|
565
|
REFERENCES `party` (`id` )
|
|
566
|
ON DELETE CASCADE
|
|
567
|
ON UPDATE CASCADE)
|
|
568
|
ENGINE = InnoDB
|
|
569
|
DEFAULT CHARACTER SET = utf8
|
|
570
|
COLLATE = utf8_bin;
|
|
571
|
|
|
572
|
|
|
573
|
-- -----------------------------------------------------
|
|
574
|
-- Table `taxon_determination`
|
|
575
|
-- -----------------------------------------------------
|
|
576
|
DROP TABLE IF EXISTS `taxon_determination` ;
|
|
577
|
|
|
578
|
CREATE TABLE IF NOT EXISTS `taxon_determination` (
|
|
579
|
`id` VARBINARY(767) NOT NULL ,
|
|
580
|
`taxon_assertion` VARBINARY(767) NOT NULL ,
|
|
581
|
`identified_by` VARBINARY(767) NULL DEFAULT NULL ,
|
|
582
|
`fit_info` SET('hstore') NULL ,
|
|
583
|
INDEX `fk_taxon_occurrence_has_qualified_taxon1_idx` (`taxon_assertion` ASC) ,
|
|
584
|
PRIMARY KEY (`id`) ,
|
|
585
|
INDEX `fk_taxon_determination_party1_idx` (`identified_by` ASC) ,
|
|
586
|
UNIQUE INDEX `taxon_determination_unique` (`taxon_assertion` ASC, `identified_by` ASC) ,
|
|
587
|
CONSTRAINT `fk_taxon_occurrence_has_qualified_taxon1`
|
|
588
|
FOREIGN KEY (`taxon_assertion` )
|
|
589
|
REFERENCES `taxon_assertion` (`id` )
|
|
590
|
ON DELETE CASCADE
|
|
591
|
ON UPDATE CASCADE,
|
|
592
|
CONSTRAINT `fk_taxon_determination_record1`
|
|
593
|
FOREIGN KEY (`id` )
|
|
594
|
REFERENCES `taxon_observation` (`id` )
|
|
595
|
ON DELETE CASCADE
|
|
596
|
ON UPDATE CASCADE,
|
|
597
|
CONSTRAINT `fk_taxon_determination_party1`
|
|
598
|
FOREIGN KEY (`identified_by` )
|
|
599
|
REFERENCES `party` (`id` )
|
|
600
|
ON DELETE CASCADE
|
|
601
|
ON UPDATE CASCADE)
|
|
602
|
ENGINE = InnoDB
|
|
603
|
DEFAULT CHARACTER SET = utf8
|
|
604
|
COLLATE = utf8_bin
|
|
605
|
COMMENT = 'An assertion that a [[VegCore#TaxonOccurrence|TaxonOccurrence]] is a particular [[VegCore#Taxon|Taxon]]';
|
|
606
|
|
|
607
|
|
|
608
|
-- -----------------------------------------------------
|
|
609
|
-- Table `taxon_occurrence`
|
|
610
|
-- -----------------------------------------------------
|
|
611
|
DROP TABLE IF EXISTS `taxon_occurrence` ;
|
|
612
|
|
|
613
|
CREATE TABLE IF NOT EXISTS `taxon_occurrence` (
|
|
614
|
`id` VARBINARY(767) NOT NULL ,
|
|
615
|
`current_determination` VARBINARY(767) NULL DEFAULT NULL ,
|
|
616
|
`original_determination` VARBINARY(767) NULL DEFAULT NULL ,
|
|
617
|
PRIMARY KEY (`id`) ,
|
|
618
|
INDEX `fk_taxon_occurrence_taxon_determination1_idx` (`original_determination` ASC) ,
|
|
619
|
INDEX `fk_taxon_occurrence_taxon_determination2_idx` (`current_determination` ASC) ,
|
|
620
|
CONSTRAINT `fk_taxon_occurrence_taxon_determination1`
|
|
621
|
FOREIGN KEY (`original_determination` )
|
|
622
|
REFERENCES `taxon_determination` (`id` )
|
|
623
|
ON DELETE CASCADE
|
|
624
|
ON UPDATE CASCADE,
|
|
625
|
CONSTRAINT `fk_taxon_occurrence_taxon_determination2`
|
|
626
|
FOREIGN KEY (`current_determination` )
|
|
627
|
REFERENCES `taxon_determination` (`id` )
|
|
628
|
ON DELETE CASCADE
|
|
629
|
ON UPDATE CASCADE,
|
|
630
|
CONSTRAINT `fk_taxon_occurrence_event1`
|
|
631
|
FOREIGN KEY (`id` )
|
|
632
|
REFERENCES `record` (`id` )
|
|
633
|
ON DELETE CASCADE
|
|
634
|
ON UPDATE CASCADE)
|
|
635
|
ENGINE = InnoDB
|
|
636
|
DEFAULT CHARACTER SET = utf8
|
|
637
|
COLLATE = utf8_bin
|
|
638
|
COMMENT = 'Any entity on which [[VegCore#TaxonDetermination|TaxonDetermination]]s can be made';
|
|
639
|
|
|
640
|
|
|
641
|
-- -----------------------------------------------------
|
|
642
|
-- Table `individual`
|
|
643
|
-- -----------------------------------------------------
|
|
644
|
DROP TABLE IF EXISTS `individual` ;
|
|
645
|
|
|
646
|
CREATE TABLE IF NOT EXISTS `individual` (
|
|
647
|
`id` VARBINARY(767) NOT NULL ,
|
|
648
|
`tag` VARBINARY(767) NULL DEFAULT NULL ,
|
|
649
|
PRIMARY KEY (`id`) ,
|
|
650
|
CONSTRAINT `fk_individual_record1`
|
|
651
|
FOREIGN KEY (`id` )
|
|
652
|
REFERENCES `taxon_occurrence` (`id` )
|
|
653
|
ON DELETE CASCADE
|
|
654
|
ON UPDATE CASCADE)
|
|
655
|
ENGINE = InnoDB
|
|
656
|
DEFAULT CHARACTER SET = utf8
|
|
657
|
COLLATE = utf8_bin
|
|
658
|
COMMENT = 'A distinct biological organism';
|
|
659
|
|
|
660
|
|
|
661
|
-- -----------------------------------------------------
|
|
662
|
-- Table `aggregate_observation`
|
|
663
|
-- -----------------------------------------------------
|
|
664
|
DROP TABLE IF EXISTS `aggregate_observation` ;
|
|
665
|
|
|
666
|
CREATE TABLE IF NOT EXISTS `aggregate_observation` (
|
|
667
|
`id` VARBINARY(767) NOT NULL ,
|
|
668
|
`taxon_concept` VARBINARY(767) NOT NULL ,
|
|
669
|
`traits` SET('hstore') NULL ,
|
|
670
|
PRIMARY KEY (`id`) ,
|
|
671
|
INDEX `fk_aggregate_observation_taxon_name1_idx` (`taxon_concept` ASC) ,
|
|
672
|
CONSTRAINT `fk_aggregate_observation_taxon_occurrence1`
|
|
673
|
FOREIGN KEY (`id` )
|
|
674
|
REFERENCES `taxon_observation` (`id` )
|
|
675
|
ON DELETE CASCADE
|
|
676
|
ON UPDATE CASCADE,
|
|
677
|
CONSTRAINT `fk_aggregate_observation_taxon_name1`
|
|
678
|
FOREIGN KEY (`taxon_concept` )
|
|
679
|
REFERENCES `taxon_concept` (`id` )
|
|
680
|
ON DELETE CASCADE
|
|
681
|
ON UPDATE CASCADE)
|
|
682
|
ENGINE = InnoDB
|
|
683
|
DEFAULT CHARACTER SET = utf8
|
|
684
|
COLLATE = utf8_bin
|
|
685
|
COMMENT = '\"An observation applying to all occurrences of an organism based on an aggregation factor\" (\"VegX\":http://wiki.tdwg.org/twiki/pub/Vegetation/WebHome/VegX_Schema_1.5.3_proposed.zip#/veg.xsd#/aggregateOrganismObservations/aggregateOrganismObservation)';
|
|
686
|
|
|
687
|
|
|
688
|
-- -----------------------------------------------------
|
|
689
|
-- Table `taxon_presence`
|
|
690
|
-- -----------------------------------------------------
|
|
691
|
DROP TABLE IF EXISTS `taxon_presence` ;
|
|
692
|
|
|
693
|
CREATE TABLE IF NOT EXISTS `taxon_presence` (
|
|
694
|
`id` VARBINARY(767) NOT NULL ,
|
|
695
|
`taxon_concept` VARBINARY(767) NOT NULL ,
|
|
696
|
`traits` SET('hstore') NULL ,
|
|
697
|
PRIMARY KEY (`id`) ,
|
|
698
|
INDEX `fk_taxon_presence_taxon_name1_idx` (`taxon_concept` ASC) ,
|
|
699
|
CONSTRAINT `fk_taxon_observation_taxon_occurrence1`
|
|
700
|
FOREIGN KEY (`id` )
|
|
701
|
REFERENCES `taxon_observation` (`id` )
|
|
702
|
ON DELETE CASCADE
|
|
703
|
ON UPDATE CASCADE,
|
|
704
|
CONSTRAINT `fk_taxon_presence_taxon_name1`
|
|
705
|
FOREIGN KEY (`taxon_concept` )
|
|
706
|
REFERENCES `taxon_concept` (`id` )
|
|
707
|
ON DELETE CASCADE
|
|
708
|
ON UPDATE CASCADE)
|
|
709
|
ENGINE = InnoDB
|
|
710
|
DEFAULT CHARACTER SET = utf8
|
|
711
|
COLLATE = utf8_bin
|
|
712
|
COMMENT = 'An observation of just a [[VegCore#Taxon|Taxon]]\'s _presence_';
|
|
713
|
|
|
714
|
|
|
715
|
-- -----------------------------------------------------
|
|
716
|
-- Table `community`
|
|
717
|
-- -----------------------------------------------------
|
|
718
|
DROP TABLE IF EXISTS `community` ;
|
|
719
|
|
|
720
|
CREATE TABLE IF NOT EXISTS `community` (
|
|
721
|
`id` VARBINARY(767) NOT NULL ,
|
|
722
|
`name` VARBINARY(767) NOT NULL ,
|
|
723
|
`info` SET('hstore') NULL ,
|
|
724
|
PRIMARY KEY (`id`) ,
|
|
725
|
CONSTRAINT `fk_community_record1`
|
|
726
|
FOREIGN KEY (`id` )
|
|
727
|
REFERENCES `record` (`id` )
|
|
728
|
ON DELETE CASCADE
|
|
729
|
ON UPDATE CASCADE)
|
|
730
|
ENGINE = InnoDB
|
|
731
|
DEFAULT CHARACTER SET = utf8
|
|
732
|
COLLATE = utf8_bin
|
|
733
|
COMMENT = '\"A community type is an abstract grouping of organisms that tend to co-occur on the landscape due to shared ecological requirements or preferences. May be designated by syntaxon or physiognomic types.\" ([[VegCore#VegX|VegX]])';
|
|
734
|
|
|
735
|
|
|
736
|
-- -----------------------------------------------------
|
|
737
|
-- Table `geological_context`
|
|
738
|
-- -----------------------------------------------------
|
|
739
|
DROP TABLE IF EXISTS `geological_context` ;
|
|
740
|
|
|
741
|
CREATE TABLE IF NOT EXISTS `geological_context` (
|
|
742
|
`id` VARBINARY(767) NOT NULL ,
|
|
743
|
`name` VARBINARY(767) NOT NULL ,
|
|
744
|
`info` SET('hstore') NULL ,
|
|
745
|
PRIMARY KEY (`id`) ,
|
|
746
|
CONSTRAINT `fk_geological_context_record1`
|
|
747
|
FOREIGN KEY (`id` )
|
|
748
|
REFERENCES `record` (`id` )
|
|
749
|
ON DELETE CASCADE
|
|
750
|
ON UPDATE CASCADE)
|
|
751
|
ENGINE = InnoDB
|
|
752
|
DEFAULT CHARACTER SET = utf8
|
|
753
|
COLLATE = utf8_bin
|
|
754
|
COMMENT = '\"information pertaining to a location within a geological context, such as stratigraphy\" (\"DwC\":http://rs.tdwg.org/dwc/terms/#GeologicalContext)';
|
|
755
|
|
|
756
|
|
|
757
|
-- -----------------------------------------------------
|
|
758
|
-- Table `place_observation`
|
|
759
|
-- -----------------------------------------------------
|
|
760
|
DROP TABLE IF EXISTS `place_observation` ;
|
|
761
|
|
|
762
|
CREATE TABLE IF NOT EXISTS `place_observation` (
|
|
763
|
`id` VARBINARY(767) NOT NULL ,
|
|
764
|
`place` VARBINARY(767) NOT NULL ,
|
|
765
|
`elevation_m` DOUBLE NULL ,
|
|
766
|
`slope_incline_deg` DOUBLE NULL ,
|
|
767
|
`slope_direction_deg_N` DOUBLE NULL ,
|
|
768
|
`geological_context` VARBINARY(767) NULL DEFAULT NULL ,
|
|
769
|
`community` VARBINARY(767) NULL DEFAULT NULL ,
|
|
770
|
`observations` SET('hstore') NULL ,
|
|
771
|
INDEX `fk_place_observation_place1_idx` (`place` ASC) ,
|
|
772
|
INDEX `fk_place_observation_geological_context1_idx` (`geological_context` ASC) ,
|
|
773
|
INDEX `fk_place_observation_community1_idx` (`community` ASC) ,
|
|
774
|
INDEX `fk_place_observation_event1_idx` (`id` ASC) ,
|
|
775
|
PRIMARY KEY (`id`) ,
|
|
776
|
CONSTRAINT `fk_place_observation_place1`
|
|
777
|
FOREIGN KEY (`place` )
|
|
778
|
REFERENCES `place` (`id` )
|
|
779
|
ON DELETE CASCADE
|
|
780
|
ON UPDATE CASCADE,
|
|
781
|
CONSTRAINT `fk_place_observation_geological_context1`
|
|
782
|
FOREIGN KEY (`geological_context` )
|
|
783
|
REFERENCES `geological_context` (`id` )
|
|
784
|
ON DELETE CASCADE
|
|
785
|
ON UPDATE CASCADE,
|
|
786
|
CONSTRAINT `fk_place_observation_community1`
|
|
787
|
FOREIGN KEY (`community` )
|
|
788
|
REFERENCES `community` (`id` )
|
|
789
|
ON DELETE CASCADE
|
|
790
|
ON UPDATE CASCADE,
|
|
791
|
CONSTRAINT `fk_place_observation_event1`
|
|
792
|
FOREIGN KEY (`id` )
|
|
793
|
REFERENCES `event` (`id` )
|
|
794
|
ON DELETE CASCADE
|
|
795
|
ON UPDATE CASCADE)
|
|
796
|
ENGINE = InnoDB
|
|
797
|
DEFAULT CHARACTER SET = utf8
|
|
798
|
COLLATE = utf8_bin
|
|
799
|
COMMENT = 'A sampling of a [[VegCore#Location|Location]]';
|
|
800
|
|
|
801
|
|
|
802
|
-- -----------------------------------------------------
|
|
803
|
-- Table `soil_observation`
|
|
804
|
-- -----------------------------------------------------
|
|
805
|
DROP TABLE IF EXISTS `soil_observation` ;
|
|
806
|
|
|
807
|
CREATE TABLE IF NOT EXISTS `soil_observation` (
|
|
808
|
`id` VARBINARY(767) NOT NULL ,
|
|
809
|
`observations` SET('hstore') NULL ,
|
|
810
|
PRIMARY KEY (`id`) ,
|
|
811
|
CONSTRAINT `fk_soil_observation_place_observation1`
|
|
812
|
FOREIGN KEY (`id` )
|
|
813
|
REFERENCES `place_observation` (`id` )
|
|
814
|
ON DELETE CASCADE
|
|
815
|
ON UPDATE CASCADE)
|
|
816
|
ENGINE = InnoDB
|
|
817
|
DEFAULT CHARACTER SET = utf8
|
|
818
|
COLLATE = utf8_bin
|
|
819
|
COMMENT = 'A sampling of a [[VegCore#Location|Location]]\'s soil';
|
|
820
|
|
|
821
|
|
|
822
|
-- -----------------------------------------------------
|
|
823
|
-- Table `plot`
|
|
824
|
-- -----------------------------------------------------
|
|
825
|
DROP TABLE IF EXISTS `plot` ;
|
|
826
|
|
|
827
|
CREATE TABLE IF NOT EXISTS `plot` (
|
|
828
|
`id` VARBINARY(767) NOT NULL ,
|
|
829
|
`name` VARBINARY(767) NULL DEFAULT NULL ,
|
|
830
|
`area_m2` DOUBLE NULL ,
|
|
831
|
`bounding_box` VARBINARY(767) NULL DEFAULT NULL ,
|
|
832
|
PRIMARY KEY (`id`) ,
|
|
833
|
CONSTRAINT `fk_subplot_place1`
|
|
834
|
FOREIGN KEY (`id` )
|
|
835
|
REFERENCES `place` (`id` )
|
|
836
|
ON DELETE CASCADE
|
|
837
|
ON UPDATE CASCADE)
|
|
838
|
ENGINE = InnoDB
|
|
839
|
DEFAULT CHARACTER SET = utf8
|
|
840
|
COLLATE = utf8_bin;
|
|
841
|
|
|
842
|
|
|
843
|
-- -----------------------------------------------------
|
|
844
|
-- Table `subplot`
|
|
845
|
-- -----------------------------------------------------
|
|
846
|
DROP TABLE IF EXISTS `subplot` ;
|
|
847
|
|
|
848
|
CREATE TABLE IF NOT EXISTS `subplot` (
|
|
849
|
`id` VARBINARY(767) NOT NULL ,
|
|
850
|
`x_m` DOUBLE NULL ,
|
|
851
|
`y_m` DOUBLE NULL ,
|
|
852
|
PRIMARY KEY (`id`) ,
|
|
853
|
CONSTRAINT `fk_subplot_plot1`
|
|
854
|
FOREIGN KEY (`id` )
|
|
855
|
REFERENCES `plot` (`id` )
|
|
856
|
ON DELETE CASCADE
|
|
857
|
ON UPDATE CASCADE)
|
|
858
|
ENGINE = InnoDB
|
|
859
|
DEFAULT CHARACTER SET = utf8
|
|
860
|
COLLATE = utf8_bin
|
|
861
|
COMMENT = '\"subplot, line, or any other subsample or subdivision of plot\" (\"SALVIAS\":http://salvias.net/Documents/salvias_data_dictionary.html#Plot_data/subplot)';
|
|
862
|
|
|
863
|
|
|
864
|
-- -----------------------------------------------------
|
|
865
|
-- Table `validatable_place`
|
|
866
|
-- -----------------------------------------------------
|
|
867
|
DROP TABLE IF EXISTS `validatable_place` ;
|
|
868
|
|
|
869
|
CREATE TABLE IF NOT EXISTS `validatable_place` (
|
|
870
|
`id` VARBINARY(767) NOT NULL ,
|
|
871
|
`coordinates` VARBINARY(767) NOT NULL ,
|
|
872
|
`path` VARBINARY(767) NOT NULL ,
|
|
873
|
PRIMARY KEY (`id`) ,
|
|
874
|
INDEX `fk_geovalidation_place_path1_idx` (`path` ASC) ,
|
|
875
|
INDEX `fk_geovalidation_coordinates1_idx` (`coordinates` ASC) ,
|
|
876
|
UNIQUE INDEX `validatable_place_unique` (`path` ASC, `coordinates` ASC) ,
|
|
877
|
CONSTRAINT `fk_geovalidation_place_path1`
|
|
878
|
FOREIGN KEY (`path` )
|
|
879
|
REFERENCES `place_path` (`id` )
|
|
880
|
ON DELETE CASCADE
|
|
881
|
ON UPDATE CASCADE,
|
|
882
|
CONSTRAINT `fk_geovalidation_coordinates1`
|
|
883
|
FOREIGN KEY (`coordinates` )
|
|
884
|
REFERENCES `coordinates` (`id` )
|
|
885
|
ON DELETE CASCADE
|
|
886
|
ON UPDATE CASCADE)
|
|
887
|
ENGINE = InnoDB
|
|
888
|
DEFAULT CHARACTER SET = utf8
|
|
889
|
COLLATE = utf8_bin;
|
|
890
|
|
|
891
|
|
|
892
|
-- -----------------------------------------------------
|
|
893
|
-- Table `individual_observation`
|
|
894
|
-- -----------------------------------------------------
|
|
895
|
DROP TABLE IF EXISTS `individual_observation` ;
|
|
896
|
|
|
897
|
CREATE TABLE IF NOT EXISTS `individual_observation` (
|
|
898
|
`id` VARBINARY(767) NOT NULL ,
|
|
899
|
`individual` VARBINARY(767) NULL ,
|
|
900
|
`code` VARBINARY(767) NULL ,
|
|
901
|
`traits` SET('hstore') NULL ,
|
|
902
|
PRIMARY KEY (`id`) ,
|
|
903
|
INDEX `fk_individual_observation_individual1_idx` (`individual` ASC) ,
|
|
904
|
CONSTRAINT `fk_individual_observation_taxon_occurrence1`
|
|
905
|
FOREIGN KEY (`id` )
|
|
906
|
REFERENCES `taxon_observation` (`id` )
|
|
907
|
ON DELETE CASCADE
|
|
908
|
ON UPDATE CASCADE,
|
|
909
|
CONSTRAINT `fk_individual_observation_individual1`
|
|
910
|
FOREIGN KEY (`individual` )
|
|
911
|
REFERENCES `individual` (`id` )
|
|
912
|
ON DELETE CASCADE
|
|
913
|
ON UPDATE CASCADE)
|
|
914
|
ENGINE = InnoDB
|
|
915
|
DEFAULT CHARACTER SET = utf8
|
|
916
|
COLLATE = utf8_bin
|
|
917
|
COMMENT = 'An observation of an [[VegCore#Individual|Individual]]';
|
|
918
|
|
|
919
|
|
|
920
|
-- -----------------------------------------------------
|
|
921
|
-- Table `stem`
|
|
922
|
-- -----------------------------------------------------
|
|
923
|
DROP TABLE IF EXISTS `stem` ;
|
|
924
|
|
|
925
|
CREATE TABLE IF NOT EXISTS `stem` (
|
|
926
|
`id` VARBINARY(767) NOT NULL ,
|
|
927
|
`individual` VARBINARY(767) NOT NULL ,
|
|
928
|
PRIMARY KEY (`id`) ,
|
|
929
|
INDEX `fk_stem_individual1_idx` (`individual` ASC) ,
|
|
930
|
CONSTRAINT `fk_stem_individual1`
|
|
931
|
FOREIGN KEY (`individual` )
|
|
932
|
REFERENCES `individual` (`id` )
|
|
933
|
ON DELETE CASCADE
|
|
934
|
ON UPDATE CASCADE,
|
|
935
|
CONSTRAINT `fk_stem_individual2`
|
|
936
|
FOREIGN KEY (`id` )
|
|
937
|
REFERENCES `individual` (`id` )
|
|
938
|
ON DELETE CASCADE
|
|
939
|
ON UPDATE CASCADE)
|
|
940
|
ENGINE = InnoDB
|
|
941
|
DEFAULT CHARACTER SET = utf8
|
|
942
|
COLLATE = utf8_bin
|
|
943
|
COMMENT = 'An \"individual tree stem\" (\"VegBank\":http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename)';
|
|
944
|
|
|
945
|
|
|
946
|
-- -----------------------------------------------------
|
|
947
|
-- Table `stem_observation`
|
|
948
|
-- -----------------------------------------------------
|
|
949
|
DROP TABLE IF EXISTS `stem_observation` ;
|
|
950
|
|
|
951
|
CREATE TABLE IF NOT EXISTS `stem_observation` (
|
|
952
|
`id` VARBINARY(767) NOT NULL ,
|
|
953
|
`individual_observation` VARBINARY(767) NOT NULL ,
|
|
954
|
`stem` VARBINARY(767) NULL ,
|
|
955
|
`traits` SET('hstore') NULL ,
|
|
956
|
PRIMARY KEY (`id`) ,
|
|
957
|
INDEX `fk_stem_observation_individual_observation1_idx` (`individual_observation` ASC) ,
|
|
958
|
INDEX `fk_stem_observation_stem1_idx` (`stem` ASC) ,
|
|
959
|
UNIQUE INDEX `stem_observation_unique` (`individual_observation` ASC, `stem` ASC) ,
|
|
960
|
CONSTRAINT `fk_stem_observation_individual_observation1`
|
|
961
|
FOREIGN KEY (`individual_observation` )
|
|
962
|
REFERENCES `individual_observation` (`id` )
|
|
963
|
ON DELETE CASCADE
|
|
964
|
ON UPDATE CASCADE,
|
|
965
|
CONSTRAINT `fk_stem_observation_stem1`
|
|
966
|
FOREIGN KEY (`stem` )
|
|
967
|
REFERENCES `stem` (`id` )
|
|
968
|
ON DELETE CASCADE
|
|
969
|
ON UPDATE CASCADE,
|
|
970
|
CONSTRAINT `fk_stem_observation_individual_observation2`
|
|
971
|
FOREIGN KEY (`id` )
|
|
972
|
REFERENCES `individual_observation` (`id` )
|
|
973
|
ON DELETE CASCADE
|
|
974
|
ON UPDATE CASCADE)
|
|
975
|
ENGINE = InnoDB
|
|
976
|
DEFAULT CHARACTER SET = utf8
|
|
977
|
COLLATE = utf8_bin
|
|
978
|
COMMENT = 'An observation of a [[VegCore#Stem|Stem]]';
|
|
979
|
|
|
980
|
|
|
981
|
-- -----------------------------------------------------
|
|
982
|
-- Table `project`
|
|
983
|
-- -----------------------------------------------------
|
|
984
|
DROP TABLE IF EXISTS `project` ;
|
|
985
|
|
|
986
|
CREATE TABLE IF NOT EXISTS `project` (
|
|
987
|
`id` VARBINARY(767) NOT NULL ,
|
|
988
|
`name` VARBINARY(767) NOT NULL ,
|
|
989
|
`info` SET('hstore') NULL ,
|
|
990
|
PRIMARY KEY (`id`) ,
|
|
991
|
CONSTRAINT `fk_project_event1`
|
|
992
|
FOREIGN KEY (`id` )
|
|
993
|
REFERENCES `event` (`id` )
|
|
994
|
ON DELETE CASCADE
|
|
995
|
ON UPDATE CASCADE)
|
|
996
|
ENGINE = InnoDB
|
|
997
|
DEFAULT CHARACTER SET = utf8
|
|
998
|
COLLATE = utf8_bin
|
|
999
|
COMMENT = 'A \"project established to collect vegetation plot data. Each plot originates as part of a project.\" (\"VegBank\":http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=project&entity=dba_tabledescription&where=where_tablename)';
|
|
1000
|
|
|
1001
|
|
|
1002
|
-- -----------------------------------------------------
|
|
1003
|
-- Table `referenced_class`
|
|
1004
|
-- -----------------------------------------------------
|
|
1005
|
DROP TABLE IF EXISTS `referenced_class` ;
|
|
1006
|
|
|
1007
|
CREATE TABLE IF NOT EXISTS `referenced_class` (
|
|
1008
|
`id` VARBINARY(767) NOT NULL ,
|
|
1009
|
PRIMARY KEY (`id`) ,
|
|
1010
|
CONSTRAINT `fk_example_record10`
|
|
1011
|
FOREIGN KEY (`id` )
|
|
1012
|
REFERENCES `record` (`id` )
|
|
1013
|
ON DELETE CASCADE
|
|
1014
|
ON UPDATE CASCADE)
|
|
1015
|
ENGINE = InnoDB
|
|
1016
|
DEFAULT CHARACTER SET = utf8
|
|
1017
|
COLLATE = utf8_bin;
|
|
1018
|
|
|
1019
|
|
|
1020
|
-- -----------------------------------------------------
|
|
1021
|
-- Table `base_class`
|
|
1022
|
-- -----------------------------------------------------
|
|
1023
|
DROP TABLE IF EXISTS `base_class` ;
|
|
1024
|
|
|
1025
|
CREATE TABLE IF NOT EXISTS `base_class` (
|
|
1026
|
`id` VARBINARY(767) NOT NULL ,
|
|
1027
|
`referenced_class` VARBINARY(767) NOT NULL ,
|
|
1028
|
PRIMARY KEY (`id`) ,
|
|
1029
|
INDEX `fk_base_class_referenced_class1_idx` (`referenced_class` ASC) ,
|
|
1030
|
CONSTRAINT `fk_example_record1`
|
|
1031
|
FOREIGN KEY (`id` )
|
|
1032
|
REFERENCES `record` (`id` )
|
|
1033
|
ON DELETE CASCADE
|
|
1034
|
ON UPDATE CASCADE,
|
|
1035
|
CONSTRAINT `fk_base_class_referenced_class1`
|
|
1036
|
FOREIGN KEY (`referenced_class` )
|
|
1037
|
REFERENCES `referenced_class` (`id` )
|
|
1038
|
ON DELETE CASCADE
|
|
1039
|
ON UPDATE CASCADE)
|
|
1040
|
ENGINE = InnoDB
|
|
1041
|
DEFAULT CHARACTER SET = utf8
|
|
1042
|
COLLATE = utf8_bin;
|
|
1043
|
|
|
1044
|
|
|
1045
|
-- -----------------------------------------------------
|
|
1046
|
-- Table `derived_class`
|
|
1047
|
-- -----------------------------------------------------
|
|
1048
|
DROP TABLE IF EXISTS `derived_class` ;
|
|
1049
|
|
|
1050
|
CREATE TABLE IF NOT EXISTS `derived_class` (
|
|
1051
|
`id` VARBINARY(767) NOT NULL ,
|
|
1052
|
PRIMARY KEY (`id`) ,
|
|
1053
|
CONSTRAINT `fk_derived_class_base_class1`
|
|
1054
|
FOREIGN KEY (`id` )
|
|
1055
|
REFERENCES `base_class` (`id` )
|
|
1056
|
ON DELETE CASCADE
|
|
1057
|
ON UPDATE CASCADE)
|
|
1058
|
ENGINE = InnoDB
|
|
1059
|
DEFAULT CHARACTER SET = utf8
|
|
1060
|
COLLATE = utf8_bin;
|
|
1061
|
|
|
1062
|
|
|
1063
|
-- -----------------------------------------------------
|
|
1064
|
-- Table `stratum`
|
|
1065
|
-- -----------------------------------------------------
|
|
1066
|
DROP TABLE IF EXISTS `stratum` ;
|
|
1067
|
|
|
1068
|
CREATE TABLE IF NOT EXISTS `stratum` (
|
|
1069
|
`id` VARBINARY(767) NOT NULL ,
|
|
1070
|
`name` VARBINARY(767) NOT NULL ,
|
|
1071
|
`info` SET('hstore') NULL ,
|
|
1072
|
PRIMARY KEY (`id`) ,
|
|
1073
|
CONSTRAINT `fk_place_path_record10`
|
|
1074
|
FOREIGN KEY (`id` )
|
|
1075
|
REFERENCES `method` (`id` )
|
|
1076
|
ON DELETE CASCADE
|
|
1077
|
ON UPDATE CASCADE)
|
|
1078
|
ENGINE = InnoDB
|
|
1079
|
DEFAULT CHARACTER SET = utf8
|
|
1080
|
COLLATE = utf8_bin;
|
|
1081
|
|
|
1082
|
|
|
1083
|
-- -----------------------------------------------------
|
|
1084
|
-- Table `geovalidation`
|
|
1085
|
-- -----------------------------------------------------
|
|
1086
|
DROP TABLE IF EXISTS `geovalidation` ;
|
|
1087
|
|
|
1088
|
CREATE TABLE IF NOT EXISTS `geovalidation` (
|
|
1089
|
`id` VARBINARY(767) NOT NULL ,
|
|
1090
|
`geovalid` TINYINT(1) NOT NULL ,
|
|
1091
|
`lat_long_domain_valid` TINYINT(1) NOT NULL ,
|
|
1092
|
`lat_long_in_ranks` SET('hstore') NULL ,
|
|
1093
|
PRIMARY KEY (`id`) ,
|
|
1094
|
CONSTRAINT `fk_geovalidation_validatable_place1`
|
|
1095
|
FOREIGN KEY (`id` )
|
|
1096
|
REFERENCES `validatable_place` (`id` )
|
|
1097
|
ON DELETE CASCADE
|
|
1098
|
ON UPDATE CASCADE)
|
|
1099
|
ENGINE = InnoDB
|
|
1100
|
DEFAULT CHARACTER SET = utf8
|
|
1101
|
COLLATE = utf8_bin
|
|
1102
|
COMMENT = 'The accuracy of the [[VegCore#Coordinates|Coordinates]], taking into account the [[VegCore#Placename|Placename]]';
|
|
1103
|
|
|
1104
|
|
|
1105
|
-- -----------------------------------------------------
|
|
1106
|
-- Table `taxon_path`
|
|
1107
|
-- -----------------------------------------------------
|
|
1108
|
DROP TABLE IF EXISTS `taxon_path` ;
|
|
1109
|
|
|
1110
|
CREATE TABLE IF NOT EXISTS `taxon_path` (
|
|
1111
|
`id` VARBINARY(767) NOT NULL ,
|
|
1112
|
`family` VARBINARY(767) NULL DEFAULT NULL ,
|
|
1113
|
`genus` VARBINARY(767) NULL DEFAULT NULL ,
|
|
1114
|
`specific_epithet` VARBINARY(767) NULL DEFAULT NULL ,
|
|
1115
|
`ranks` SET('hstore') NULL ,
|
|
1116
|
PRIMARY KEY (`id`) ,
|
|
1117
|
CONSTRAINT `fk_taxon_path_taxon_name1`
|
|
1118
|
FOREIGN KEY (`id` )
|
|
1119
|
REFERENCES `taxon_name` (`id` )
|
|
1120
|
ON DELETE CASCADE
|
|
1121
|
ON UPDATE CASCADE)
|
|
1122
|
ENGINE = InnoDB
|
|
1123
|
DEFAULT CHARACTER SET = utf8
|
|
1124
|
COLLATE = utf8_bin
|
|
1125
|
COMMENT = '\"a group of one (or more) populations of organism(s), which a taxonomist adjudges to be a unit\" (\"Wikipedia\":http://en.wikipedia.org/wiki/Taxon)';
|
|
1126
|
|
|
1127
|
|
|
1128
|
-- -----------------------------------------------------
|
|
1129
|
-- Table `specimen_observation`
|
|
1130
|
-- -----------------------------------------------------
|
|
1131
|
DROP TABLE IF EXISTS `specimen_observation` ;
|
|
1132
|
|
|
1133
|
CREATE TABLE IF NOT EXISTS `specimen_observation` (
|
|
1134
|
`id` VARBINARY(767) NOT NULL ,
|
|
1135
|
`specimen` VARBINARY(767) NOT NULL ,
|
|
1136
|
`traits` SET('hstore') NULL ,
|
|
1137
|
PRIMARY KEY (`id`) ,
|
|
1138
|
INDEX `fk_specimen_observation_specimen1_idx` (`specimen` ASC) ,
|
|
1139
|
CONSTRAINT `fk_specimen_taxon_occurrence10`
|
|
1140
|
FOREIGN KEY (`id` )
|
|
1141
|
REFERENCES `taxon_observation` (`id` )
|
|
1142
|
ON DELETE CASCADE
|
|
1143
|
ON UPDATE CASCADE,
|
|
1144
|
CONSTRAINT `fk_specimen_observation_specimen1`
|
|
1145
|
FOREIGN KEY (`specimen` )
|
|
1146
|
REFERENCES `specimen` (`id` )
|
|
1147
|
ON DELETE CASCADE
|
|
1148
|
ON UPDATE CASCADE)
|
|
1149
|
ENGINE = InnoDB
|
|
1150
|
DEFAULT CHARACTER SET = utf8
|
|
1151
|
COLLATE = utf8_bin;
|
|
1152
|
|
|
1153
|
|
|
1154
|
-- -----------------------------------------------------
|
|
1155
|
-- Table `event_participant`
|
|
1156
|
-- -----------------------------------------------------
|
|
1157
|
DROP TABLE IF EXISTS `event_participant` ;
|
|
1158
|
|
|
1159
|
CREATE TABLE IF NOT EXISTS `event_participant` (
|
|
1160
|
`event` VARBINARY(767) NOT NULL ,
|
|
1161
|
`party` VARBINARY(767) NOT NULL ,
|
|
1162
|
`sort_order` INT NULL ,
|
|
1163
|
PRIMARY KEY (`event`, `party`) ,
|
|
1164
|
INDEX `fk_event_has_party_party1_idx` (`party` ASC) ,
|
|
1165
|
INDEX `fk_event_has_party_event1_idx` (`event` ASC) ,
|
|
1166
|
CONSTRAINT `fk_event_has_party_event1`
|
|
1167
|
FOREIGN KEY (`event` )
|
|
1168
|
REFERENCES `event` (`id` )
|
|
1169
|
ON DELETE CASCADE
|
|
1170
|
ON UPDATE CASCADE,
|
|
1171
|
CONSTRAINT `fk_event_has_party_party1`
|
|
1172
|
FOREIGN KEY (`party` )
|
|
1173
|
REFERENCES `party` (`id` )
|
|
1174
|
ON DELETE CASCADE
|
|
1175
|
ON UPDATE CASCADE)
|
|
1176
|
ENGINE = InnoDB
|
|
1177
|
DEFAULT CHARACTER SET = utf8
|
|
1178
|
COLLATE = utf8_bin;
|
|
1179
|
|
|
1180
|
|
|
1181
|
-- -----------------------------------------------------
|
|
1182
|
-- Table `specimenholder_institution`
|
|
1183
|
-- -----------------------------------------------------
|
|
1184
|
DROP TABLE IF EXISTS `specimenholder_institution` ;
|
|
1185
|
|
|
1186
|
CREATE TABLE IF NOT EXISTS `specimenholder_institution` (
|
|
1187
|
`specimen` VARBINARY(767) NOT NULL ,
|
|
1188
|
`institution` VARBINARY(767) NOT NULL ,
|
|
1189
|
`sort_order` INT NULL ,
|
|
1190
|
PRIMARY KEY (`specimen`, `institution`) ,
|
|
1191
|
INDEX `fk_specimen_has_organization_organization1_idx` (`institution` ASC) ,
|
|
1192
|
INDEX `fk_specimen_has_organization_specimen1_idx` (`specimen` ASC) ,
|
|
1193
|
CONSTRAINT `fk_specimen_has_organization_specimen1`
|
|
1194
|
FOREIGN KEY (`specimen` )
|
|
1195
|
REFERENCES `specimen` (`id` )
|
|
1196
|
ON DELETE CASCADE
|
|
1197
|
ON UPDATE CASCADE,
|
|
1198
|
CONSTRAINT `fk_specimen_has_organization_organization1`
|
|
1199
|
FOREIGN KEY (`institution` )
|
|
1200
|
REFERENCES `organization` (`id` )
|
|
1201
|
ON DELETE CASCADE
|
|
1202
|
ON UPDATE CASCADE)
|
|
1203
|
ENGINE = InnoDB
|
|
1204
|
DEFAULT CHARACTER SET = utf8
|
|
1205
|
COLLATE = utf8_bin;
|
|
1206
|
|
|
1207
|
USE `VegCore` ;
|
|
1208
|
|
|
1209
|
|
|
1210
|
SET SQL_MODE=@OLD_SQL_MODE;
|
|
1211
|
SET FOREIGN_KEY_CHECKS=@OLD_FOREIGN_KEY_CHECKS;
|
|
1212
|
SET UNIQUE_CHECKS=@OLD_UNIQUE_CHECKS;
|
